Wall clock time and date at job start Tue Mar 31 2020 05:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46895 * 109.47048 * 2 1 4 4 C 1.46900 * 111.00054 * 72.15356 * 3 2 1 5 5 C 1.53002 * 109.47258 * 199.60346 * 4 3 2 6 6 O 1.42908 * 109.47058 * 64.98179 * 5 4 3 7 7 C 1.42894 * 113.99706 * 184.85213 * 6 5 4 8 8 C 1.50703 * 109.47056 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99614 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00185 * 179.97438 * 8 7 6 11 11 N 1.31521 * 120.00176 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00243 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46929 * 60.00081 * 12 10 8 14 14 H 1.48497 * 109.47283 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47075 * 300.00436 * 12 10 8 16 16 C 1.39849 * 111.00137 * 196.09915 * 3 2 1 17 17 C 1.38831 * 120.08222 * 296.32521 * 16 3 2 18 18 C 1.38149 * 119.95072 * 180.27955 * 17 16 3 19 19 C 1.38280 * 120.11063 * 359.46117 * 18 17 16 20 20 C 1.38288 * 120.15822 * 0.24138 * 19 18 17 21 21 C 1.50707 * 119.97186 * 180.02562 * 20 19 18 22 22 C 1.38275 * 120.05056 * 0.03802 * 20 19 18 23 23 F 1.35106 * 120.05668 * 180.02562 * 22 20 19 24 24 H 1.09001 * 109.46986 * 181.42363 * 1 2 3 25 25 H 1.08997 * 109.47303 * 301.42407 * 1 2 3 26 26 H 1.09002 * 109.47470 * 61.42397 * 1 2 3 27 27 H 1.09007 * 109.47209 * 240.00517 * 2 1 3 28 28 H 1.09004 * 109.47554 * 120.00536 * 2 1 3 29 29 H 1.09003 * 109.46710 * 319.60196 * 4 3 2 30 30 H 1.08995 * 109.47463 * 79.59826 * 4 3 2 31 31 H 1.09001 * 109.47353 * 184.98042 * 5 4 3 32 32 H 1.08993 * 109.46667 * 304.98113 * 5 4 3 33 33 H 1.09000 * 109.47168 * 300.00018 * 7 6 5 34 34 H 1.08999 * 109.47305 * 59.99901 * 7 6 5 35 35 H 0.96993 * 120.00171 * 179.97438 * 11 10 8 36 36 H 1.07998 * 120.02331 * 359.97438 * 17 16 3 37 37 H 1.08003 * 119.94839 * 179.74850 * 18 17 16 38 38 H 1.07998 * 119.91886 * 180.25566 * 19 18 17 39 39 H 1.09003 * 109.46571 * 89.99987 * 21 20 19 40 40 H 1.08994 * 109.47008 * 209.99686 * 21 20 19 41 41 H 1.08997 * 109.46951 * 330.00109 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7988 2.0214 1.3054 5 6 1.8514 3.5423 1.1468 6 8 0.7634 3.9735 0.3267 7 6 0.7816 5.3700 0.0242 8 6 -0.4037 5.7120 -0.8413 9 1 -1.1010 4.9400 -1.1316 10 6 -0.5981 7.0104 -1.2624 11 7 0.2513 7.9504 -0.9092 12 14 -2.0678 7.4344 -2.3346 13 1 -3.3210 7.1005 -1.6112 14 1 -2.0488 8.8856 -2.6491 15 1 -2.0016 6.6541 -3.5963 16 6 3.3693 1.4394 -0.3620 17 6 4.3296 0.8369 0.4394 18 6 5.6627 0.8973 0.0822 19 6 6.0412 1.5473 -1.0782 20 6 5.0879 2.1437 -1.8830 21 6 5.5050 2.8505 -3.1470 22 6 3.7523 2.0922 -1.5288 23 9 2.8207 2.6744 -2.3153 24 1 -0.3633 -1.0274 0.0255 25 1 -0.3634 0.5358 0.8769 26 1 -0.3634 0.4916 -0.9025 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.8218 1.7299 1.6911 30 1 2.5743 1.7016 2.0014 31 1 1.7761 4.0127 2.1272 32 1 2.7939 3.8263 0.6789 33 1 0.7333 5.9430 0.9502 34 1 1.7015 5.6147 -0.5069 35 1 0.1147 8.8637 -1.2058 36 1 4.0351 0.3256 1.3439 37 1 6.4101 0.4320 0.7078 38 1 7.0839 1.5891 -1.3566 39 1 5.5003 2.1438 -3.9769 40 1 4.8079 3.6617 -3.3566 41 1 6.5086 3.2570 -3.0216 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879414929.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:44 Heat of formation + Delta-G solvation = -85.823454 kcal Electronic energy + Delta-G solvation = -22640.372471 eV Core-core repulsion = 19240.949283 eV Total energy + Delta-G solvation = -3399.423188 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.68798 -40.88930 -38.80255 -37.74485 -34.93330 -33.48590 -32.27994 -31.43468 -29.41536 -28.32290 -27.78706 -24.56613 -23.90315 -23.59854 -22.92419 -21.05717 -18.65597 -18.54486 -17.77606 -17.35724 -17.25296 -17.08234 -16.38760 -16.25705 -15.77722 -15.63738 -15.17363 -14.83436 -14.58761 -14.31775 -14.24937 -13.88447 -13.60838 -13.38201 -13.28198 -13.25486 -12.85833 -12.74795 -12.65928 -12.61343 -12.45195 -12.29387 -12.10560 -11.81267 -11.72597 -11.29381 -10.86805 -10.20779 -9.68558 -9.52264 -9.36151 -8.32638 -6.44803 0.17229 0.23288 1.36515 1.42693 1.50780 2.33807 2.57835 2.69270 3.00501 3.21797 3.44926 3.78383 3.94194 3.99457 4.09796 4.20939 4.28339 4.30527 4.33000 4.46342 4.50051 4.59046 4.60735 4.69432 4.71952 4.78127 4.85373 4.92881 5.02723 5.10498 5.16138 5.21415 5.23115 5.35012 5.40985 5.43846 5.53719 5.83058 5.95819 6.01330 6.42409 6.55900 6.83931 7.26926 8.80036 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.005167 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.519996 B = 5417.964485 C = 6207.558820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.065 3.935 3 N -0.523 5.523 4 C 0.073 3.927 5 C 0.062 3.938 6 O -0.391 6.391 7 C 0.215 3.785 8 C -0.544 4.544 9 H 0.058 0.942 10 C 0.006 3.994 11 N -0.932 5.932 12 Si 0.983 3.017 13 H -0.262 1.262 14 H -0.271 1.271 15 H -0.269 1.269 16 C 0.048 3.952 17 C -0.131 4.131 18 C -0.110 4.110 19 C -0.095 4.095 20 C -0.130 4.130 21 C -0.113 4.113 22 C 0.075 3.925 23 F -0.152 7.152 24 H 0.084 0.916 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.017 0.983 33 H -0.016 1.016 34 H -0.029 1.029 35 H 0.271 0.729 36 H 0.150 0.850 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.668 -18.339 3.017 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.060 4.060 3 N -0.245 5.245 4 C -0.053 4.053 5 C -0.016 4.016 6 O -0.310 6.310 7 C 0.140 3.860 8 C -0.581 4.581 9 H 0.077 0.923 10 C -0.192 4.192 11 N -0.572 5.572 12 Si 0.805 3.195 13 H -0.186 1.186 14 H -0.196 1.196 15 H -0.194 1.194 16 C -0.046 4.046 17 C -0.151 4.151 18 C -0.128 4.128 19 C -0.113 4.113 20 C -0.131 4.131 21 C -0.170 4.170 22 C 0.055 3.945 23 F -0.131 7.131 24 H 0.103 0.897 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.001 0.999 34 H -0.012 1.012 35 H 0.080 0.920 36 H 0.168 0.832 37 H 0.184 0.816 38 H 0.182 0.818 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.215 -18.001 2.566 21.905 hybrid contribution -0.352 0.771 -0.114 0.856 sum 11.863 -17.230 2.452 21.062 Atomic orbital electron populations 1.21767 0.94482 1.02170 1.01703 1.22121 0.96332 0.85903 1.01659 1.59266 1.14422 1.19502 1.31299 1.22250 1.03147 0.91259 0.88676 1.22505 0.89412 0.96030 0.93632 1.87883 1.46864 1.25812 1.70460 1.19701 0.95349 0.77715 0.93216 1.21309 1.10027 0.94682 1.32131 0.92349 1.25979 1.00411 0.95275 0.97563 1.70074 1.38316 1.02194 1.46573 0.85243 0.78260 0.77402 0.78546 1.18637 1.19590 1.19404 1.19033 0.90266 1.00376 0.94973 1.21767 0.93477 0.99719 1.00151 1.21477 0.95725 0.98704 0.96897 1.21320 0.99927 0.96238 0.93796 1.20272 0.90804 1.01884 1.00177 1.20762 1.02757 0.99611 0.93871 1.18220 0.86518 0.98354 0.91398 1.91476 1.65938 1.82295 1.73381 0.89679 0.92816 0.94484 0.91264 0.91772 0.88860 0.89966 0.93081 0.96499 0.99860 1.01172 0.92046 0.83195 0.81632 0.81781 0.89639 0.93778 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 10.00 71.98 0.72 -2.96 16 2 C 0.07 1.63 5.25 86.30 0.45 2.08 16 3 N -0.52 -17.11 4.16 -695.01 -2.89 -20.00 16 4 C 0.07 2.26 5.12 86.30 0.44 2.70 16 5 C 0.06 2.57 6.12 71.98 0.44 3.01 16 6 O -0.39 -21.10 10.27 -148.98 -1.53 -22.63 16 7 C 0.22 13.25 5.69 71.24 0.41 13.66 16 8 C -0.54 -34.86 9.43 25.60 0.24 -34.61 16 9 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 10 C 0.01 0.36 5.46 84.65 0.46 0.82 16 11 N -0.93 -59.02 13.29 21.45 0.28 -58.73 16 12 Si 0.98 46.93 29.54 68.60 2.03 48.95 16 13 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 15 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 16 C 0.05 1.48 3.90 38.21 0.15 1.63 16 17 C -0.13 -2.81 8.52 22.39 0.19 -2.62 16 18 C -0.11 -1.86 10.04 22.26 0.22 -1.63 16 19 C -0.10 -1.81 9.70 22.29 0.22 -1.59 16 20 C -0.13 -3.52 5.88 -19.84 -0.12 -3.64 16 21 C -0.11 -2.70 9.83 71.24 0.70 -2.00 16 22 C 0.08 2.65 7.25 22.48 0.16 2.82 16 23 F -0.15 -6.86 16.28 44.97 0.73 -6.13 16 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 1.42 6.51 -2.39 -0.02 1.41 16 26 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.73 7.97 -2.38 -0.02 1.71 16 28 H 0.06 1.21 7.83 -2.39 -0.02 1.19 16 29 H 0.09 2.78 6.24 -2.39 -0.01 2.76 16 30 H 0.08 1.94 6.73 -2.39 -0.02 1.92 16 31 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.02 0.74 7.59 -2.39 -0.02 0.73 16 33 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 34 H -0.03 -1.95 8.14 -2.39 -0.02 -1.96 16 35 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 36 H 0.15 2.39 7.29 -2.91 -0.02 2.37 16 37 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 38 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 39 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.04 1.30 7.64 -2.39 -0.02 1.29 16 41 H 0.10 1.73 8.08 -2.39 -0.02 1.71 16 Total: -1.00 -79.07 344.03 4.32 -74.76 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.00 Total: 6.12 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 4.69 Total: -22.34 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -2.61 Total: -78.73 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -1.53 Total: -22.63 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.73 Total: -6.13 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -79.07 4.32 -74.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879414929.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.065 kcal (2) G-P(sol) polarization free energy of solvation -79.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds