Wall clock time and date at job start Tue Mar 31 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.47296 * 2 1 4 4 C 1.46490 * 120.00005 * 270.00273 * 3 2 1 5 5 C 1.53008 * 109.47104 * 269.99480 * 4 3 2 6 6 O 1.42904 * 109.46800 * 65.00371 * 5 4 3 7 7 C 1.42903 * 113.99950 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47025 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00249 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00010 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00174 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 119.99831 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47192 * 90.00117 * 12 10 8 14 14 H 1.48500 * 109.47038 * 210.00418 * 12 10 8 15 15 H 1.48496 * 109.47223 * 330.00115 * 12 10 8 16 16 C 1.39817 * 119.99518 * 89.99961 * 3 2 1 17 17 C 1.38898 * 120.04467 * 179.97438 * 16 3 2 18 18 C 1.38106 * 119.94696 * 179.97438 * 17 16 3 19 19 C 1.38480 * 120.05212 * 0.02562 * 18 17 16 20 20 F 1.35099 * 119.95058 * 180.27271 * 19 18 17 21 21 C 1.38445 * 120.09757 * 0.02562 * 19 18 17 22 22 C 1.50704 * 119.97211 * 179.97438 * 21 19 18 23 23 C 1.38132 * 120.04852 * 359.97438 * 21 19 18 24 24 H 1.08993 * 109.47154 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47079 * 300.00038 * 1 2 3 26 26 H 1.09001 * 109.46868 * 59.99552 * 1 2 3 27 27 H 1.09000 * 109.47322 * 240.00422 * 2 1 3 28 28 H 1.08997 * 109.47116 * 119.99996 * 2 1 3 29 29 H 1.09001 * 109.47771 * 29.99645 * 4 3 2 30 30 H 1.09001 * 109.47406 * 149.99942 * 4 3 2 31 31 H 1.08998 * 109.47009 * 185.00118 * 5 4 3 32 32 H 1.08994 * 109.47044 * 305.00274 * 5 4 3 33 33 H 1.09001 * 109.46930 * 299.99969 * 7 6 5 34 34 H 1.09004 * 109.46751 * 59.99796 * 7 6 5 35 35 H 0.96996 * 120.00165 * 179.97438 * 11 10 8 36 36 H 1.07996 * 120.02892 * 359.97438 * 17 16 3 37 37 H 1.08005 * 119.96864 * 180.02562 * 18 17 16 38 38 H 1.08998 * 109.47140 * 90.00174 * 22 21 19 39 39 H 1.09008 * 109.46519 * 210.00003 * 22 21 19 40 40 H 1.08990 * 109.47205 * 329.99751 * 22 21 19 41 41 H 1.08001 * 120.02379 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.7076 1.8315 -1.7103 6 8 3.8944 0.4433 -1.9935 7 6 5.2179 0.1094 -2.4164 8 6 5.3008 -1.3710 -2.6855 9 1 4.4300 -1.9947 -2.5470 10 6 6.4887 -1.9296 -3.1075 11 7 6.5611 -3.2217 -3.3418 12 14 7.9950 -0.8512 -3.3464 13 1 8.7636 -0.7863 -2.0774 14 1 8.8511 -1.4262 -4.4149 15 1 7.5678 0.5164 -3.7368 16 6 2.2514 2.0403 1.2109 17 6 2.7149 3.3496 1.2121 18 6 2.9439 3.9988 2.4094 19 6 2.7122 3.3452 3.6080 20 9 2.9316 3.9841 4.7780 21 6 2.2512 2.0398 3.6092 22 6 2.0006 1.3310 4.9153 23 6 2.0208 1.3866 2.4141 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6878 -2.0284 30 1 2.0956 3.1411 -1.1383 31 1 3.9157 2.4163 -2.6063 32 1 4.3863 2.1342 -0.9130 33 1 5.4578 0.6585 -3.3269 34 1 5.9277 0.3763 -1.6334 35 1 7.3967 -3.6146 -3.6390 36 1 2.8962 3.8596 0.2776 37 1 3.3039 5.0171 2.4107 38 1 0.9711 1.5023 5.2299 39 1 2.1679 0.2616 4.7862 40 1 2.6814 1.7163 5.6742 41 1 1.6616 0.3680 2.4154 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880176972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:42 Heat of formation + Delta-G solvation = -67.311265 kcal Electronic energy + Delta-G solvation = -21999.718707 eV Core-core repulsion = 18601.098268 eV Total energy + Delta-G solvation = -3398.620439 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.63677 -39.72610 -37.37808 -36.01927 -32.98602 -32.71640 -31.29272 -30.43670 -28.18218 -26.85839 -26.83014 -23.53145 -22.63769 -21.89777 -21.71382 -19.86633 -17.68509 -16.98417 -16.70622 -16.52083 -15.62700 -15.47565 -15.38702 -14.62614 -14.48514 -14.27852 -13.95889 -13.56825 -13.37650 -13.11356 -13.05642 -12.84944 -12.77205 -12.45077 -12.22963 -11.95876 -11.90812 -11.65288 -11.51198 -11.12866 -10.97183 -10.85942 -10.76452 -10.52678 -9.91237 -9.50328 -9.24417 -8.92309 -8.83527 -8.52958 -7.10482 -6.16691 -4.15992 1.28396 1.46500 3.18385 3.21493 3.28669 3.29547 3.71623 4.31249 4.47085 4.51110 4.69850 4.79720 5.02062 5.15130 5.21311 5.26609 5.29059 5.38983 5.40212 5.49495 5.51454 5.52827 5.67687 5.71519 5.79820 5.87806 5.95511 5.96910 6.07092 6.11433 6.22327 6.29258 6.37854 6.42482 6.55499 6.88818 6.94415 7.37350 7.54292 7.59219 7.94539 8.59885 8.93035 9.42691 10.96212 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018066 B = 0.004048 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.539918 B = 6915.375036 C = 7319.761551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.116 3.884 3 N -0.609 5.609 4 C 0.126 3.874 5 C 0.037 3.963 6 O -0.376 6.376 7 C 0.170 3.830 8 C -0.519 4.519 9 H 0.082 0.918 10 C 0.073 3.927 11 N -0.895 5.895 12 Si 0.875 3.125 13 H -0.274 1.274 14 H -0.282 1.282 15 H -0.267 1.267 16 C 0.225 3.775 17 C -0.184 4.184 18 C -0.098 4.098 19 C 0.019 3.981 20 F -0.150 7.150 21 C -0.068 4.068 22 C -0.114 4.114 23 C -0.176 4.176 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.002 0.998 34 H -0.003 1.003 35 H 0.267 0.733 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.113 12.822 10.868 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.007 4.007 3 N -0.316 5.316 4 C 0.003 3.997 5 C -0.042 4.042 6 O -0.296 6.296 7 C 0.095 3.905 8 C -0.557 4.557 9 H 0.100 0.900 10 C -0.129 4.129 11 N -0.533 5.533 12 Si 0.702 3.298 13 H -0.199 1.199 14 H -0.207 1.207 15 H -0.192 1.192 16 C 0.121 3.879 17 C -0.207 4.207 18 C -0.117 4.117 19 C -0.002 4.002 20 F -0.129 7.129 21 C -0.070 4.070 22 C -0.170 4.170 23 C -0.198 4.198 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.114 0.886 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.019 0.981 34 H 0.014 0.986 35 H 0.077 0.923 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.162 12.432 10.663 19.820 hybrid contribution 1.301 0.807 -0.101 1.535 sum -9.860 13.239 10.562 19.597 Atomic orbital electron populations 1.22220 0.96856 1.01847 1.01825 1.21515 0.92968 0.81844 1.04333 1.46629 1.69493 1.13382 1.02129 1.21537 0.95951 0.96914 0.85323 1.22875 0.96468 0.86411 0.98457 1.87873 1.33045 1.21047 1.87592 1.20583 0.79842 0.97353 0.92705 1.20852 0.98843 0.90402 1.45590 0.90031 1.24755 0.98365 0.94953 0.94786 1.69867 1.26979 1.10488 1.45957 0.86862 0.83279 0.81153 0.78528 1.19923 1.20731 1.19159 1.17900 0.92547 0.91206 0.86270 1.20499 1.08043 0.94154 0.97981 1.20794 1.00038 1.00092 0.90818 1.17217 1.09758 0.92034 0.81164 1.91410 1.93413 1.81749 1.46372 1.19624 0.98627 0.92638 0.96108 1.20724 1.02238 1.00336 0.93744 1.20430 1.08839 1.00856 0.89685 0.91789 0.92898 0.92674 0.88571 0.90979 0.89843 0.89877 0.93654 0.94033 0.98063 0.98559 0.92322 0.85294 0.85280 0.90976 0.91011 0.91303 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 10.24 37.16 0.38 -1.46 16 2 C 0.12 1.57 5.70 -4.04 -0.02 1.55 16 3 N -0.61 -8.32 2.57 -171.72 -0.44 -8.76 16 4 C 0.13 1.63 5.57 -4.04 -0.02 1.61 16 5 C 0.04 0.60 6.28 37.16 0.23 0.84 16 6 O -0.38 -8.22 9.15 -35.23 -0.32 -8.54 16 7 C 0.17 4.24 4.76 36.00 0.17 4.41 16 8 C -0.52 -15.10 9.99 -34.44 -0.34 -15.44 16 9 H 0.08 2.58 8.06 -52.49 -0.42 2.15 16 10 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 11 N -0.89 -27.26 13.96 55.43 0.77 -26.48 16 12 Si 0.88 21.28 27.47 -169.99 -4.67 16.62 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 16 C 0.22 3.04 6.55 -83.74 -0.55 2.49 16 17 C -0.18 -2.29 9.21 -39.39 -0.36 -2.66 16 18 C -0.10 -1.20 10.02 -39.54 -0.40 -1.59 16 19 C 0.02 0.26 7.24 -39.42 -0.29 -0.03 16 20 F -0.15 -2.03 16.47 2.25 0.04 -1.99 16 21 C -0.07 -0.86 5.88 -104.58 -0.62 -1.48 16 22 C -0.11 -1.15 9.83 36.01 0.35 -0.79 16 23 C -0.18 -2.27 8.86 -39.39 -0.35 -2.62 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.10 1.55 7.11 -51.93 -0.37 1.18 16 28 H 0.07 0.96 6.20 -51.93 -0.32 0.64 16 29 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 30 H 0.08 0.85 6.20 -51.93 -0.32 0.53 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.00 0.04 7.20 -51.93 -0.37 -0.33 16 34 H 0.00 -0.08 7.57 -51.93 -0.39 -0.47 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 36 H 0.13 1.40 6.14 -52.49 -0.32 1.07 16 37 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.65 8.09 -51.92 -0.42 0.23 16 40 H 0.07 0.69 7.64 -51.93 -0.40 0.29 16 41 H 0.13 1.56 6.14 -52.49 -0.32 1.23 16 LS Contribution 339.59 15.07 5.12 5.12 Total: -1.00 -31.38 339.59 -7.62 -39.00 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -6.21 Total: -1.81 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -1.90 Total: -13.14 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.33 Total: -35.25 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.32 Total: -8.54 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.38 -7.62 -39.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880176972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.311 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds