Wall clock time and date at job start Tue Mar 31 2020 05:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.47296 * 2 1 4 4 C 1.46490 * 120.00005 * 270.00273 * 3 2 1 5 5 C 1.53008 * 109.47104 * 269.99480 * 4 3 2 6 6 O 1.42904 * 109.46800 * 65.00371 * 5 4 3 7 7 C 1.42903 * 113.99950 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47025 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00249 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00010 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00174 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 119.99831 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47192 * 90.00117 * 12 10 8 14 14 H 1.48500 * 109.47038 * 210.00418 * 12 10 8 15 15 H 1.48496 * 109.47223 * 330.00115 * 12 10 8 16 16 C 1.39817 * 119.99518 * 89.99961 * 3 2 1 17 17 C 1.38898 * 120.04467 * 179.97438 * 16 3 2 18 18 C 1.38106 * 119.94696 * 179.97438 * 17 16 3 19 19 C 1.38480 * 120.05212 * 0.02562 * 18 17 16 20 20 F 1.35099 * 119.95058 * 180.27271 * 19 18 17 21 21 C 1.38445 * 120.09757 * 0.02562 * 19 18 17 22 22 C 1.50704 * 119.97211 * 179.97438 * 21 19 18 23 23 C 1.38132 * 120.04852 * 359.97438 * 21 19 18 24 24 H 1.08993 * 109.47154 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47079 * 300.00038 * 1 2 3 26 26 H 1.09001 * 109.46868 * 59.99552 * 1 2 3 27 27 H 1.09000 * 109.47322 * 240.00422 * 2 1 3 28 28 H 1.08997 * 109.47116 * 119.99996 * 2 1 3 29 29 H 1.09001 * 109.47771 * 29.99645 * 4 3 2 30 30 H 1.09001 * 109.47406 * 149.99942 * 4 3 2 31 31 H 1.08998 * 109.47009 * 185.00118 * 5 4 3 32 32 H 1.08994 * 109.47044 * 305.00274 * 5 4 3 33 33 H 1.09001 * 109.46930 * 299.99969 * 7 6 5 34 34 H 1.09004 * 109.46751 * 59.99796 * 7 6 5 35 35 H 0.96996 * 120.00165 * 179.97438 * 11 10 8 36 36 H 1.07996 * 120.02892 * 359.97438 * 17 16 3 37 37 H 1.08005 * 119.96864 * 180.02562 * 18 17 16 38 38 H 1.08998 * 109.47140 * 90.00174 * 22 21 19 39 39 H 1.09008 * 109.46519 * 210.00003 * 22 21 19 40 40 H 1.08990 * 109.47205 * 329.99751 * 22 21 19 41 41 H 1.08001 * 120.02379 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.7076 1.8315 -1.7103 6 8 3.8944 0.4433 -1.9935 7 6 5.2179 0.1094 -2.4164 8 6 5.3008 -1.3710 -2.6855 9 1 4.4300 -1.9947 -2.5470 10 6 6.4887 -1.9296 -3.1075 11 7 6.5611 -3.2217 -3.3418 12 14 7.9950 -0.8512 -3.3464 13 1 8.7636 -0.7863 -2.0774 14 1 8.8511 -1.4262 -4.4149 15 1 7.5678 0.5164 -3.7368 16 6 2.2514 2.0403 1.2109 17 6 2.7149 3.3496 1.2121 18 6 2.9439 3.9988 2.4094 19 6 2.7122 3.3452 3.6080 20 9 2.9316 3.9841 4.7780 21 6 2.2512 2.0398 3.6092 22 6 2.0006 1.3310 4.9153 23 6 2.0208 1.3866 2.4141 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6878 -2.0284 30 1 2.0956 3.1411 -1.1383 31 1 3.9157 2.4163 -2.6063 32 1 4.3863 2.1342 -0.9130 33 1 5.4578 0.6585 -3.3269 34 1 5.9277 0.3763 -1.6334 35 1 7.3967 -3.6146 -3.6390 36 1 2.8962 3.8596 0.2776 37 1 3.3039 5.0171 2.4107 38 1 0.9711 1.5023 5.2299 39 1 2.1679 0.2616 4.7862 40 1 2.6814 1.7163 5.6742 41 1 1.6616 0.3680 2.4154 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880176972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:41 Heat of formation + Delta-G solvation = -84.778777 kcal Electronic energy + Delta-G solvation = -22000.476156 eV Core-core repulsion = 18601.098268 eV Total energy + Delta-G solvation = -3399.377887 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.64615 -40.72754 -38.79759 -37.26171 -34.88740 -33.89000 -32.44024 -31.51495 -29.99068 -28.10343 -27.72816 -24.60051 -23.96238 -23.72214 -22.68901 -20.90982 -19.07996 -18.65485 -17.80391 -17.68528 -17.11871 -16.78648 -16.47831 -16.29744 -15.70387 -15.49012 -15.26380 -14.73460 -14.50640 -14.28167 -14.14260 -14.07530 -13.85472 -13.71949 -13.51557 -13.16887 -12.95556 -12.78497 -12.72379 -12.54894 -12.51348 -12.35847 -11.92999 -11.85133 -11.57194 -11.33321 -10.94374 -10.53609 -10.34826 -9.77774 -8.39003 -8.13180 -6.46222 0.34006 0.47024 1.31422 1.33327 1.43963 2.16087 2.26953 2.74198 2.94037 3.08016 3.52424 3.76251 3.89572 4.00433 4.18204 4.26554 4.30112 4.36790 4.45779 4.47222 4.48533 4.54991 4.61044 4.68394 4.75028 4.83480 4.87742 4.95790 4.98214 5.01451 5.06861 5.18648 5.27767 5.33738 5.38437 5.43165 5.46355 5.89937 5.94771 6.33918 6.55820 6.58865 6.74986 7.18335 8.77863 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018066 B = 0.004048 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.539918 B = 6915.375036 C = 7319.761551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.118 3.882 3 N -0.615 5.615 4 C 0.130 3.870 5 C 0.029 3.971 6 O -0.396 6.396 7 C 0.182 3.818 8 C -0.541 4.541 9 H 0.033 0.967 10 C 0.015 3.985 11 N -0.941 5.941 12 Si 0.951 3.049 13 H -0.264 1.264 14 H -0.273 1.273 15 H -0.246 1.246 16 C 0.211 3.789 17 C -0.187 4.187 18 C -0.098 4.098 19 C 0.001 3.999 20 F -0.155 7.155 21 C -0.075 4.075 22 C -0.113 4.113 23 C -0.186 4.186 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.012 0.988 34 H 0.000 1.000 35 H 0.273 0.727 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.732 15.276 11.065 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.006 4.006 3 N -0.323 5.323 4 C 0.007 3.993 5 C -0.049 4.049 6 O -0.316 6.316 7 C 0.106 3.894 8 C -0.579 4.579 9 H 0.052 0.948 10 C -0.183 4.183 11 N -0.580 5.580 12 Si 0.772 3.228 13 H -0.189 1.189 14 H -0.198 1.198 15 H -0.169 1.169 16 C 0.107 3.893 17 C -0.209 4.209 18 C -0.117 4.117 19 C -0.020 4.020 20 F -0.134 7.134 21 C -0.076 4.076 22 C -0.170 4.170 23 C -0.209 4.209 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.136 0.864 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.029 0.971 34 H 0.018 0.982 35 H 0.082 0.918 36 H 0.165 0.835 37 H 0.168 0.832 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.807 14.902 10.875 21.380 hybrid contribution 1.095 0.006 -0.108 1.100 sum -9.712 14.908 10.766 20.797 Atomic orbital electron populations 1.22096 0.94645 1.02533 1.02205 1.21417 0.94716 0.81964 1.02460 1.46680 1.69830 1.13260 1.02545 1.21622 0.93704 0.98868 0.85115 1.23239 0.98786 0.83562 0.99332 1.87854 1.31244 1.24826 1.87650 1.20253 0.81550 0.94467 0.93126 1.21132 0.97740 0.92682 1.46331 0.94826 1.25773 1.02087 0.96480 0.93934 1.70019 1.28371 1.12775 1.46856 0.85677 0.78308 0.79775 0.79017 1.18891 1.19757 1.16917 1.18121 0.93065 0.91867 0.86228 1.20713 1.07566 0.93768 0.98850 1.21054 0.99297 1.01012 0.90326 1.17486 1.10518 0.92521 0.81462 1.91396 1.93519 1.81822 1.46644 1.19894 0.98077 0.92712 0.96947 1.20775 1.03054 1.00567 0.92596 1.20565 1.09239 1.01204 0.89855 0.90996 0.92187 0.92442 0.91873 0.91423 0.89526 0.86378 0.91730 0.94200 0.97081 0.98183 0.91838 0.83501 0.83196 0.89606 0.90230 0.91347 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 10.24 71.98 0.74 -2.55 16 2 C 0.12 3.21 5.70 86.38 0.49 3.70 16 3 N -0.62 -16.17 2.57 -697.21 -1.79 -17.96 16 4 C 0.13 3.10 5.57 86.38 0.48 3.58 16 5 C 0.03 0.89 6.28 71.98 0.45 1.35 16 6 O -0.40 -17.30 9.15 -148.98 -1.36 -18.66 16 7 C 0.18 8.95 4.76 71.23 0.34 9.29 16 8 C -0.54 -32.37 9.99 25.60 0.26 -32.11 16 9 H 0.03 2.25 8.06 -2.91 -0.02 2.23 16 10 C 0.02 0.91 5.47 84.66 0.46 1.37 16 11 N -0.94 -58.67 13.96 21.45 0.30 -58.37 16 12 Si 0.95 43.22 27.47 68.60 1.88 45.11 16 13 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.25 -10.27 6.54 99.48 0.65 -9.62 16 16 C 0.21 5.39 6.55 38.17 0.25 5.64 16 17 C -0.19 -4.21 9.21 22.40 0.21 -4.01 16 18 C -0.10 -2.18 10.02 22.30 0.22 -1.95 16 19 C 0.00 0.03 7.24 22.38 0.16 0.19 16 20 F -0.15 -3.98 16.47 44.97 0.74 -3.24 16 21 C -0.07 -1.80 5.88 -19.84 -0.12 -1.92 16 22 C -0.11 -2.15 9.83 71.24 0.70 -1.45 16 23 C -0.19 -4.64 8.86 22.39 0.20 -4.45 16 24 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 2.14 7.11 -2.39 -0.02 2.12 16 28 H 0.07 1.85 6.20 -2.39 -0.01 1.84 16 29 H 0.09 2.03 8.07 -2.39 -0.02 2.01 16 30 H 0.12 2.01 6.20 -2.39 -0.01 1.99 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 34 H 0.00 0.02 7.57 -2.39 -0.02 0.00 16 35 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 36 H 0.15 2.68 6.14 -2.91 -0.02 2.67 16 37 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 38 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.36 8.09 -2.38 -0.02 1.34 16 40 H 0.07 1.29 7.64 -2.39 -0.02 1.27 16 41 H 0.14 3.16 6.14 -2.91 -0.02 3.14 16 Total: -1.00 -69.09 339.59 5.57 -63.52 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.96 Total: 12.92 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 4.84 Total: -23.32 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -1.50 Total: -76.33 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -1.36 Total: -18.66 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.74 Total: -3.24 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.11 kcal Total: -69.09 5.57 -63.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880176972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.254 kcal (2) G-P(sol) polarization free energy of solvation -69.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds