Wall clock time and date at job start Tue Mar 31 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 5 5 C 1.46905 * 110.99870 * 84.99904 * 4 2 1 6 6 C 1.52993 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47206 * 299.99787 * 6 5 4 8 8 C 1.53001 * 109.47323 * 60.00045 * 6 5 4 9 9 C 1.50698 * 109.47393 * 180.02562 * 6 5 4 10 10 H 1.08010 * 119.99765 * 359.97438 * 9 6 5 11 11 C 1.37872 * 120.00736 * 179.97438 * 9 6 5 12 12 N 1.31523 * 119.99548 * 359.97438 * 11 9 6 13 13 Si 1.86793 * 120.00627 * 179.97438 * 11 9 6 14 14 H 1.48502 * 109.47294 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47394 * 119.99957 * 13 11 9 16 16 H 1.48499 * 109.47384 * 240.00136 * 13 11 9 17 17 C 1.50692 * 109.47298 * 120.00156 * 2 1 3 18 18 C 1.38717 * 120.04300 * 254.99928 * 17 2 1 19 19 O 1.35893 * 120.04204 * 0.02562 * 18 17 2 20 20 C 1.38728 * 119.91412 * 179.97438 * 18 17 2 21 21 C 1.38173 * 119.99665 * 0.02562 * 20 18 17 22 22 C 1.38203 * 120.07974 * 359.97184 * 21 20 18 23 23 C 1.38345 * 120.04131 * 74.72063 * 17 2 1 24 24 F 1.35102 * 119.99448 * 0.02562 * 23 17 2 25 25 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 27 27 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 28 28 H 1.00901 * 111.00067 * 208.95080 * 4 2 1 29 29 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 30 30 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 31 31 H 1.08999 * 109.47049 * 60.00315 * 7 6 5 32 32 H 1.09005 * 109.47151 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47171 * 300.00432 * 7 6 5 34 34 H 1.08991 * 109.46963 * 60.00286 * 8 6 5 35 35 H 1.09005 * 109.47384 * 179.97438 * 8 6 5 36 36 H 1.08999 * 109.47105 * 299.99791 * 8 6 5 37 37 H 0.97002 * 119.99722 * 180.02562 * 12 11 9 38 38 H 0.96703 * 114.00358 * 89.99427 * 19 18 17 39 39 H 1.08007 * 119.99816 * 180.02562 * 20 18 17 40 40 H 1.08001 * 119.95660 * 179.97438 * 21 20 18 41 41 H 1.07999 * 119.95449 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5950 -0.5330 -3.5745 7 6 3.9921 -1.0861 -3.2862 8 6 1.6451 -1.6887 -3.8953 9 6 2.6600 0.4059 -4.7514 10 1 2.3648 1.4384 -4.6356 11 6 3.0963 -0.0529 -5.9762 12 7 3.4563 -1.3101 -6.1172 13 14 3.1762 1.1107 -7.4352 14 1 2.7209 2.4609 -7.0171 15 1 4.5747 1.1911 -7.9283 16 1 2.2972 0.6054 -8.5202 17 6 2.0323 -0.7104 1.2304 18 6 2.5568 0.0185 2.2876 19 8 2.6178 1.3741 2.2154 20 6 3.0180 -0.6382 3.4193 21 6 2.9550 -2.0166 3.4919 22 6 2.4323 -2.7426 2.4384 23 6 1.9656 -2.0900 1.3093 24 9 1.4503 -2.8011 0.2826 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.9173 -1.1204 -1.0288 29 1 1.0870 0.6164 -2.5525 30 1 2.7588 1.0463 -2.1182 31 1 3.9456 -1.7651 -2.4349 32 1 4.3571 -1.6249 -4.1607 33 1 4.6688 -0.2627 -3.0577 34 1 0.6499 -1.2947 -4.1007 35 1 2.0101 -2.2269 -4.7702 36 1 1.5986 -2.3678 -3.0439 37 1 3.7636 -1.6328 -6.9787 38 1 1.8311 1.8220 2.5553 39 1 3.4263 -0.0720 4.2434 40 1 3.3147 -2.5272 4.3730 41 1 2.3837 -3.8199 2.4975 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886623358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:30 Heat of formation + Delta-G solvation = -66.019721 kcal Electronic energy + Delta-G solvation = -22815.567263 eV Core-core repulsion = 19417.002829 eV Total energy + Delta-G solvation = -3398.564434 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.60698 -39.99356 -37.13229 -36.64645 -34.77728 -31.76930 -29.99433 -29.73928 -28.49567 -25.50734 -25.17807 -24.44979 -23.05357 -22.61506 -20.38545 -18.75014 -18.34504 -16.86190 -16.59416 -16.17178 -15.65210 -15.43794 -14.94659 -14.64912 -14.45323 -14.00411 -13.69990 -13.62726 -12.84162 -12.61558 -12.51281 -12.21108 -12.04141 -11.83994 -11.71185 -11.50464 -11.25933 -11.05676 -10.91101 -10.69704 -10.53700 -10.31673 -10.08489 -9.99960 -9.31584 -9.08672 -8.79596 -8.67852 -8.54958 -8.24240 -7.64988 -5.86172 -3.96356 0.95908 1.04840 3.32234 3.33463 3.41619 3.45290 3.89433 4.40998 4.46090 4.57712 4.67822 4.79709 5.04817 5.16526 5.39193 5.43046 5.62933 5.69568 5.84666 5.92865 5.97815 6.10897 6.16399 6.22467 6.39814 6.41653 6.56339 6.69658 6.79494 6.96256 7.15269 7.24059 7.44007 7.47646 7.54583 7.78974 7.81888 7.89233 8.01369 8.27286 8.41107 8.61690 9.05300 9.68338 11.14335 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.004327 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.994044 B = 6470.057394 C = 6781.334712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.123 3.877 3 H 0.058 0.942 4 N -0.672 5.672 5 C 0.076 3.924 6 C 0.069 3.931 7 C -0.132 4.132 8 C -0.118 4.118 9 C -0.504 4.504 10 H 0.052 0.948 11 C 0.065 3.935 12 N -0.884 5.884 13 Si 0.888 3.112 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.285 1.285 17 C -0.149 4.149 18 C 0.137 3.863 19 O -0.491 6.491 20 C -0.163 4.163 21 C -0.080 4.080 22 C -0.171 4.171 23 C 0.140 3.860 24 F -0.112 7.112 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.337 0.663 29 H 0.057 0.943 30 H 0.013 0.987 31 H 0.009 0.991 32 H 0.083 0.917 33 H 0.018 0.982 34 H 0.017 0.983 35 H 0.073 0.927 36 H 0.022 0.978 37 H 0.257 0.743 38 H 0.392 0.608 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.202 -0.191 19.832 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.013 3.987 3 H 0.076 0.924 4 N -0.305 5.305 5 C -0.052 4.052 6 C 0.069 3.931 7 C -0.189 4.189 8 C -0.176 4.176 9 C -0.543 4.543 10 H 0.070 0.930 11 C -0.136 4.136 12 N -0.523 5.523 13 Si 0.716 3.284 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.150 4.150 18 C 0.092 3.908 19 O -0.301 6.301 20 C -0.181 4.181 21 C -0.098 4.098 22 C -0.190 4.190 23 C 0.120 3.880 24 F -0.090 7.090 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.157 0.843 29 H 0.075 0.925 30 H 0.031 0.969 31 H 0.028 0.972 32 H 0.102 0.898 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.067 0.933 38 H 0.248 0.752 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.228 -0.677 19.212 19.493 hybrid contribution 0.368 1.208 -0.554 1.379 sum -2.860 0.531 18.658 18.884 Atomic orbital electron populations 1.21762 0.94079 1.02449 1.00836 1.20329 0.95808 0.95926 0.86674 0.92396 1.60794 1.33443 1.33325 1.02928 1.22207 0.99194 0.93045 0.90737 1.18086 0.91809 0.93202 0.90036 1.21827 0.98819 0.98373 0.99924 1.21621 0.97186 0.98399 1.00345 1.21150 1.43270 0.95820 0.94073 0.93000 1.24886 0.95328 0.94971 0.98427 1.69858 1.44755 1.13939 1.23788 0.86610 0.77489 0.81286 0.82996 1.19978 1.21214 1.21140 1.20545 1.02915 0.92884 0.98699 1.18043 0.97156 0.83333 0.92278 1.84822 1.44425 1.14768 1.86069 1.21391 1.03694 0.95010 0.98051 1.20811 0.97629 0.93255 0.98098 1.21229 1.03006 1.01158 0.93613 1.17364 0.96449 0.88665 0.85532 1.91622 1.83536 1.77400 1.56482 0.91954 0.93606 0.91854 0.84306 0.92476 0.96876 0.97162 0.89827 0.96293 0.96405 0.90869 0.95932 0.93311 0.75210 0.85020 0.84847 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.34 37.15 0.35 -1.56 16 2 C 0.12 1.92 2.58 -68.87 -0.18 1.75 16 3 H 0.06 0.94 6.80 -51.93 -0.35 0.59 16 4 N -0.67 -12.74 4.24 -107.96 -0.46 -13.20 16 5 C 0.08 1.66 4.38 -3.82 -0.02 1.64 16 6 C 0.07 1.73 0.57 -155.66 -0.09 1.64 16 7 C -0.13 -3.25 7.92 37.16 0.29 -2.96 16 8 C -0.12 -2.97 8.09 37.16 0.30 -2.67 16 9 C -0.50 -13.89 8.01 -34.44 -0.28 -14.17 16 10 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 11 C 0.06 1.79 5.15 -17.82 -0.09 1.69 16 12 N -0.88 -25.01 9.35 55.43 0.52 -24.49 16 13 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 17 C -0.15 -2.08 4.68 -104.41 -0.49 -2.57 16 18 C 0.14 1.65 6.68 -39.22 -0.26 1.39 16 19 O -0.49 -5.43 12.34 -19.40 -0.24 -5.67 16 20 C -0.16 -1.62 9.99 -39.42 -0.39 -2.01 16 21 C -0.08 -0.74 10.04 -39.62 -0.40 -1.14 16 22 C -0.17 -1.89 10.02 -39.49 -0.40 -2.29 16 23 C 0.14 1.96 6.78 -39.44 -0.27 1.69 16 24 F -0.11 -1.84 15.25 2.25 0.03 -1.81 16 25 H 0.06 0.94 7.61 -51.93 -0.40 0.55 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.95 7.45 -51.93 -0.39 0.57 16 28 H 0.34 6.65 6.12 -39.29 -0.24 6.41 16 29 H 0.06 1.25 7.44 -51.93 -0.39 0.86 16 30 H 0.01 0.29 8.05 -51.93 -0.42 -0.13 16 31 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 32 H 0.08 2.27 6.07 -51.93 -0.32 1.95 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 2.01 6.07 -51.93 -0.32 1.70 16 36 H 0.02 0.53 7.60 -51.93 -0.39 0.13 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.39 2.42 9.06 45.56 0.41 2.83 16 39 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 40 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 329.77 15.07 4.97 4.97 Total: -1.00 -30.18 329.77 -7.32 -37.50 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.21 Total: 5.78 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -1.91 Total: -19.55 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.06 Total: -37.69 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.24 Total: -5.67 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.03 Total: -1.81 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.18 -7.32 -37.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886623358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.517 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds