Wall clock time and date at job start Tue Mar 31 2020 05:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47374 * 2 1 4 4 N 1.46900 * 109.47155 * 120.00216 * 2 1 3 5 5 C 1.46894 * 111.00254 * 274.99848 * 4 2 1 6 6 C 1.52996 * 109.47448 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47376 * 300.00278 * 6 5 4 8 8 C 1.53003 * 109.46698 * 60.00331 * 6 5 4 9 9 C 1.50699 * 109.47233 * 179.97438 * 6 5 4 10 10 H 1.08010 * 119.99783 * 1.36613 * 9 6 5 11 11 C 1.37878 * 120.00066 * 181.36132 * 9 6 5 12 12 N 1.31514 * 119.99557 * 193.96577 * 11 9 6 13 13 Si 1.86800 * 120.00065 * 13.96694 * 11 9 6 14 14 H 1.48503 * 109.46796 * 84.55365 * 13 11 9 15 15 H 1.48499 * 109.46930 * 204.55633 * 13 11 9 16 16 H 1.48505 * 109.46984 * 324.55652 * 13 11 9 17 17 C 1.50705 * 109.47099 * 239.99913 * 2 1 3 18 18 C 1.38713 * 120.03640 * 104.72480 * 17 2 1 19 19 O 1.35897 * 120.04363 * 0.02562 * 18 17 2 20 20 C 1.38732 * 119.91273 * 179.74447 * 18 17 2 21 21 C 1.38182 * 119.99462 * 0.51112 * 20 18 17 22 22 C 1.38207 * 120.07829 * 359.74644 * 21 20 18 23 23 C 1.38340 * 120.04382 * 285.00498 * 17 2 1 24 24 F 1.35100 * 119.99597 * 359.97438 * 23 17 2 25 25 H 1.08997 * 109.47362 * 299.99653 * 1 2 3 26 26 H 1.09007 * 109.47298 * 60.00065 * 1 2 3 27 27 H 1.09004 * 109.47201 * 179.97438 * 1 2 3 28 28 H 1.00899 * 111.00084 * 151.03951 * 4 2 1 29 29 H 1.09002 * 109.47252 * 59.99634 * 5 4 2 30 30 H 1.09008 * 109.47209 * 300.00175 * 5 4 2 31 31 H 1.08998 * 109.46920 * 69.30845 * 7 6 5 32 32 H 1.08996 * 109.47025 * 189.31540 * 7 6 5 33 33 H 1.08999 * 109.46530 * 309.31742 * 7 6 5 34 34 H 1.09000 * 109.47513 * 60.00073 * 8 6 5 35 35 H 1.09000 * 109.46777 * 180.02562 * 8 6 5 36 36 H 1.08996 * 109.47079 * 299.99526 * 8 6 5 37 37 H 0.97004 * 119.99695 * 180.02562 * 12 11 9 38 38 H 0.96700 * 114.00276 * 89.99777 * 19 18 17 39 39 H 1.08001 * 120.00619 * 180.25396 * 20 18 17 40 40 H 1.07991 * 119.96031 * 179.72153 * 21 20 18 41 41 H 1.07994 * 119.95887 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2224 2.3469 6 6 2.5951 -0.5334 3.5744 7 6 1.6452 -1.6891 3.8952 8 6 3.9922 -1.0864 3.2861 9 6 2.6601 0.4055 4.7514 10 1 2.3444 1.4325 4.6410 11 6 3.1225 -0.0466 5.9691 12 7 2.9281 0.6712 7.0539 13 14 4.0249 -1.6785 6.0782 14 1 5.4606 -1.4723 5.7595 15 1 3.8964 -2.2242 7.4533 16 1 3.4351 -2.6361 5.1084 17 6 2.0323 -0.7104 -1.2305 18 6 2.5515 0.0189 -2.2900 19 8 2.6083 1.3749 -2.2195 20 6 3.0181 -0.6380 -3.4193 21 6 2.9555 -2.0165 -3.4919 22 6 2.4332 -2.7426 -2.4383 23 6 1.9709 -2.0904 -1.3071 24 9 1.4607 -2.8019 -0.2782 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 2.9172 -1.1206 1.0287 29 1 1.0871 0.6162 2.5525 30 1 2.7589 1.0461 2.1182 31 1 1.7234 -2.4498 3.1184 32 1 1.9140 -2.1237 4.8579 33 1 0.6216 -1.3170 3.9375 34 1 4.6689 -0.2630 3.0576 35 1 4.3572 -1.6252 4.1604 36 1 3.9456 -1.7654 2.4347 37 1 3.2537 0.3534 7.9105 38 1 3.4303 1.7150 -1.8404 39 1 3.4265 -0.0719 -4.2434 40 1 3.3148 -2.5271 -4.3731 41 1 2.3856 -3.8199 -2.4969 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886623359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:32 Heat of formation + Delta-G solvation = -47.096647 kcal Electronic energy + Delta-G solvation = -22925.021531 eV Core-core repulsion = 19527.277663 eV Total energy + Delta-G solvation = -3397.743868 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.71037 -40.07278 -37.45222 -36.71927 -35.02123 -31.93530 -30.48126 -29.87115 -28.68344 -26.22103 -25.26437 -24.57448 -23.19897 -22.72646 -20.46087 -18.94337 -18.62142 -16.97242 -16.57795 -16.28716 -15.93323 -15.50544 -15.34291 -14.83360 -14.62448 -14.17821 -13.78038 -13.65312 -13.10029 -12.87389 -12.68829 -12.41701 -12.28959 -12.13593 -11.91844 -11.82186 -11.72804 -11.52643 -11.34475 -10.89630 -10.46350 -10.26915 -10.01292 -9.97005 -9.77921 -8.96976 -8.90664 -8.76705 -8.52589 -8.34650 -7.86242 -6.06006 -4.01401 0.88534 0.96620 3.24589 3.33037 3.43070 3.46605 3.83476 4.31902 4.42945 4.46117 4.57236 4.72021 4.92836 5.09168 5.27325 5.35631 5.53884 5.61782 5.78651 5.88196 5.94802 5.98360 6.05381 6.09318 6.14324 6.18112 6.27737 6.44338 6.52100 6.60673 6.63087 6.79690 6.84513 6.99394 7.11018 7.37669 7.44002 7.52283 7.64233 7.85299 7.94852 8.57312 8.98663 9.60426 11.07465 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026063 B = 0.004730 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.059358 B = 5918.034783 C = 6209.785467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.128 3.872 3 H 0.057 0.943 4 N -0.679 5.679 5 C 0.086 3.914 6 C 0.041 3.959 7 C -0.126 4.126 8 C -0.149 4.149 9 C -0.511 4.511 10 H 0.071 0.929 11 C 0.074 3.926 12 N -0.897 5.897 13 Si 0.884 3.116 14 H -0.289 1.289 15 H -0.307 1.307 16 H -0.245 1.245 17 C -0.150 4.150 18 C 0.139 3.861 19 O -0.492 6.492 20 C -0.162 4.162 21 C -0.079 4.079 22 C -0.171 4.171 23 C 0.139 3.861 24 F -0.114 7.114 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.335 0.665 29 H 0.066 0.934 30 H 0.020 0.980 31 H 0.033 0.967 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.044 0.956 35 H 0.040 0.960 36 H 0.032 0.968 37 H 0.262 0.738 38 H 0.394 0.606 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 -4.457 -21.569 22.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.018 3.982 3 H 0.075 0.925 4 N -0.311 5.311 5 C -0.042 4.042 6 C 0.040 3.960 7 C -0.184 4.184 8 C -0.205 4.205 9 C -0.549 4.549 10 H 0.089 0.911 11 C -0.128 4.128 12 N -0.534 5.534 13 Si 0.717 3.283 14 H -0.217 1.217 15 H -0.236 1.236 16 H -0.171 1.171 17 C -0.152 4.152 18 C 0.093 3.907 19 O -0.302 6.302 20 C -0.181 4.181 21 C -0.097 4.097 22 C -0.190 4.190 23 C 0.119 3.881 24 F -0.092 7.092 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.154 0.846 29 H 0.085 0.915 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.250 0.750 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.579 -4.717 -21.395 21.916 hybrid contribution 1.806 -0.293 0.354 1.864 sum 1.228 -5.010 -21.041 21.664 Atomic orbital electron populations 1.21734 0.93623 1.02383 1.01270 1.20284 0.96352 0.95469 0.86096 0.92544 1.60754 1.33193 1.33785 1.03398 1.22013 1.00028 0.92679 0.89492 1.18469 0.90728 0.93811 0.92972 1.22060 0.99277 0.97813 0.99230 1.22361 1.00045 0.99303 0.98838 1.20861 1.43804 0.97688 0.92578 0.91110 1.24967 0.95621 0.96842 0.95365 1.69968 1.45365 1.39493 0.98618 0.87320 0.79966 0.85796 0.75265 1.21697 1.23585 1.17101 1.20526 1.04063 0.92668 0.97937 1.18038 0.97217 0.83023 0.92398 1.84815 1.43788 1.16365 1.85250 1.21412 1.02972 0.94805 0.98890 1.20825 0.97598 0.93275 0.98013 1.21227 1.03130 1.01186 0.93475 1.17351 0.96633 0.88642 0.85480 1.91613 1.83779 1.77415 1.56362 0.91801 0.93082 0.92065 0.84594 0.91522 0.96179 0.94769 0.93877 0.94113 0.93667 0.94200 0.94859 0.92777 0.74951 0.84956 0.84809 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.35 37.16 0.35 -1.56 16 2 C 0.13 1.87 2.58 -68.86 -0.18 1.69 16 3 H 0.06 0.83 6.80 -51.93 -0.35 0.47 16 4 N -0.68 -11.49 4.42 -107.96 -0.48 -11.97 16 5 C 0.09 1.70 4.37 -3.83 -0.02 1.69 16 6 C 0.04 0.95 0.57 -155.66 -0.09 0.86 16 7 C -0.13 -2.87 7.55 37.16 0.28 -2.59 16 8 C -0.15 -3.20 7.36 37.16 0.27 -2.93 16 9 C -0.51 -14.16 8.62 -34.44 -0.30 -14.45 16 10 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 11 C 0.07 2.12 5.32 -17.82 -0.09 2.03 16 12 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 13 Si 0.88 22.16 22.79 -169.99 -3.87 18.29 16 14 H -0.29 -7.18 7.10 56.52 0.40 -6.78 16 15 H -0.31 -7.84 7.11 56.52 0.40 -7.44 16 16 H -0.25 -5.77 4.65 56.52 0.26 -5.50 16 17 C -0.15 -1.95 4.68 -104.41 -0.49 -2.44 16 18 C 0.14 1.56 6.68 -39.22 -0.26 1.30 16 19 O -0.49 -5.11 12.34 -19.42 -0.24 -5.35 16 20 C -0.16 -1.50 9.99 -39.42 -0.39 -1.89 16 21 C -0.08 -0.67 10.04 -39.61 -0.40 -1.07 16 22 C -0.17 -1.75 10.02 -39.49 -0.40 -2.15 16 23 C 0.14 1.80 6.78 -39.44 -0.27 1.54 16 24 F -0.11 -1.73 15.26 2.25 0.03 -1.69 16 25 H 0.06 0.96 7.45 -51.93 -0.39 0.57 16 26 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.06 0.92 7.64 -51.93 -0.40 0.52 16 28 H 0.33 5.62 6.10 -39.29 -0.24 5.38 16 29 H 0.07 1.37 7.44 -51.93 -0.39 0.99 16 30 H 0.02 0.40 8.06 -51.92 -0.42 -0.02 16 31 H 0.03 0.71 7.88 -51.93 -0.41 0.31 16 32 H 0.04 1.03 4.30 -51.93 -0.22 0.80 16 33 H 0.04 0.91 8.12 -51.93 -0.42 0.49 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.91 2.25 -51.93 -0.12 0.80 16 36 H 0.03 0.63 6.57 -51.93 -0.34 0.29 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.39 2.53 9.06 45.56 0.41 2.95 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 319.98 15.07 4.82 4.82 Total: -1.00 -31.48 319.98 -6.03 -37.51 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.09 Total: 5.15 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -1.98 Total: -19.99 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.30 Total: -38.74 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.24 Total: -5.35 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.03 Total: -1.69 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -3.87 Total: 18.29 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.48 -6.03 -37.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886623359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.585 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds