Wall clock time and date at job start Tue Mar 31 2020 05:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 C 1.53003 * 109.47713 * 120.00368 * 2 1 3 5 5 N 1.46895 * 109.47009 * 65.41263 * 4 2 1 6 6 C 1.46899 * 111.00240 * 212.69230 * 5 4 2 7 7 C 1.50704 * 109.47084 * 66.04713 * 6 5 4 8 8 H 1.07999 * 119.99899 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99973 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99592 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00005 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47186 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47123 * 119.99715 * 11 9 7 14 14 H 1.48497 * 109.47187 * 239.99916 * 11 9 7 15 15 C 1.46904 * 111.00204 * 88.73622 * 5 4 2 16 16 C 1.50700 * 109.47148 * 290.02744 * 15 5 4 17 17 C 1.38270 * 119.93430 * 277.15208 * 16 15 5 18 18 C 1.38183 * 120.09207 * 179.72735 * 17 16 15 19 19 C 1.38657 * 119.96764 * 0.52286 * 18 17 16 20 20 O 1.35961 * 120.05929 * 179.75151 * 19 18 17 21 21 C 1.38900 * 119.87686 * 359.47888 * 19 18 17 22 22 F 1.35099 * 120.04840 * 180.27640 * 21 19 18 23 23 C 1.38253 * 119.93833 * 97.12642 * 16 15 5 24 24 H 1.09004 * 109.46699 * 299.99495 * 1 2 3 25 25 H 1.09000 * 109.47169 * 59.99793 * 1 2 3 26 26 H 1.09004 * 109.46681 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47148 * 240.00778 * 2 1 3 28 28 H 1.08997 * 109.47842 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47385 * 300.00691 * 3 2 1 30 30 H 1.09004 * 109.46855 * 60.00600 * 3 2 1 31 31 H 1.09001 * 109.46570 * 305.41624 * 4 2 1 32 32 H 1.08994 * 109.47040 * 185.41240 * 4 2 1 33 33 H 1.08995 * 109.47256 * 186.04645 * 6 5 4 34 34 H 1.08995 * 109.46762 * 306.04889 * 6 5 4 35 35 H 0.97008 * 119.99409 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.47408 * 170.02116 * 15 5 4 37 37 H 1.09004 * 109.46434 * 50.01878 * 15 5 4 38 38 H 1.07997 * 119.95133 * 359.97154 * 17 16 15 39 39 H 1.07994 * 120.01081 * 180.25472 * 18 17 16 40 40 H 0.96699 * 113.99895 * 269.72554 * 20 19 18 41 41 H 1.07995 * 119.98707 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6601 -2.1388 1.1856 6 6 1.4026 -2.6757 2.5285 7 6 0.1866 -2.0044 3.1131 8 1 -0.3418 -1.2538 2.5442 9 6 -0.2507 -2.3478 4.3748 10 7 0.3931 -3.2616 5.0678 11 14 -1.7576 -1.5153 5.0998 12 1 -2.2966 -0.5322 4.1260 13 1 -2.7936 -2.5374 5.3954 14 1 -1.3809 -0.8151 6.3540 15 6 2.6859 -2.9283 0.4908 16 6 2.6827 -2.5774 -0.9748 17 6 1.7727 -3.1771 -1.8258 18 6 1.7632 -2.8537 -3.1692 19 6 2.6743 -1.9346 -3.6668 20 8 2.6699 -1.6187 -4.9892 21 6 3.5879 -1.3329 -2.8108 22 9 4.4735 -0.4328 -3.2909 23 6 3.5892 -1.6562 -1.4658 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.5998 -0.2666 2.1365 32 1 3.1258 -0.6381 1.2989 33 1 1.2286 -3.7497 2.4632 34 1 2.2650 -2.4854 3.1673 35 1 0.0851 -3.5035 5.9553 36 1 2.4705 -3.9900 0.6108 37 1 3.6649 -2.7058 0.9154 38 1 1.0659 -3.8964 -1.4392 39 1 1.0492 -3.3198 -3.8319 40 1 3.2447 -2.1783 -5.5292 41 1 4.2989 -1.1892 -0.7991 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891465071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:42 Heat of formation + Delta-G solvation = -69.756775 kcal Electronic energy + Delta-G solvation = -22835.503848 eV Core-core repulsion = 19436.777364 eV Total energy + Delta-G solvation = -3398.726484 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.82772 -39.79486 -37.90434 -36.26283 -34.02902 -32.56860 -30.80035 -30.22294 -27.08598 -26.56206 -25.97228 -23.88637 -22.88615 -21.60736 -20.51458 -19.39808 -18.63175 -16.93134 -16.69884 -16.18952 -15.99441 -15.22904 -15.00327 -14.58002 -14.29587 -14.18209 -13.89838 -13.64619 -13.40198 -13.11044 -12.60000 -12.31245 -12.19105 -12.00393 -11.72379 -11.59148 -11.44841 -11.19481 -10.96947 -10.76865 -10.68019 -10.58322 -10.31157 -10.15317 -9.85918 -9.77301 -9.23051 -8.73303 -8.48031 -8.36025 -7.30771 -6.05273 -4.05750 1.10091 1.20709 3.29378 3.37451 3.41910 3.49517 3.94498 4.31999 4.41478 4.72539 4.93906 5.01361 5.26893 5.30914 5.31595 5.47989 5.54295 5.69670 5.74055 5.84376 6.00458 6.01739 6.07851 6.12618 6.17871 6.23891 6.31366 6.39320 6.51908 6.57506 6.65838 6.71057 6.76689 6.99287 7.07384 7.25231 7.31514 7.48747 7.80383 8.04390 8.16422 8.50327 9.03295 9.58658 11.05610 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025136 B = 0.004645 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.683538 B = 6026.619114 C = 6321.644871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 C -0.145 4.145 4 C 0.066 3.934 5 N -0.526 5.526 6 C 0.193 3.807 7 C -0.504 4.504 8 H 0.068 0.932 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.286 1.286 15 C 0.087 3.913 16 C -0.034 4.034 17 C -0.092 4.092 18 C -0.117 4.117 19 C 0.059 3.941 20 O -0.490 6.490 21 C 0.069 3.931 22 F -0.139 7.139 23 C -0.132 4.132 24 H 0.047 0.953 25 H 0.032 0.968 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.019 0.981 33 H 0.030 0.970 34 H -0.009 1.009 35 H 0.260 0.740 36 H 0.083 0.917 37 H 0.036 0.964 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.386 0.614 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.020 1.346 -15.330 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.119 4.119 3 C -0.203 4.203 4 C -0.063 4.063 5 N -0.250 5.250 6 C 0.069 3.931 7 C -0.542 4.542 8 H 0.086 0.914 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.042 4.042 16 C -0.034 4.034 17 C -0.111 4.111 18 C -0.136 4.136 19 C 0.013 3.987 20 O -0.300 6.300 21 C 0.049 3.951 22 F -0.117 7.117 23 C -0.152 4.152 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.008 0.992 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.054 0.946 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.241 0.759 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.207 1.683 -15.238 16.191 hybrid contribution 0.453 0.330 0.734 0.924 sum 5.660 2.013 -14.504 15.699 Atomic orbital electron populations 1.21646 0.94967 1.02652 0.99530 1.21371 0.96748 0.94515 0.99236 1.21814 1.00111 0.97237 1.01127 1.22136 0.96269 0.89477 0.98385 1.62075 1.39368 1.01258 1.22297 1.19778 0.95878 0.95771 0.81709 1.21228 1.11190 1.22028 0.99801 0.91401 1.24970 0.97186 0.95334 0.97064 1.69968 1.40232 1.31634 1.12054 0.86496 0.82878 0.79416 0.78985 1.19608 1.21064 1.21188 1.21139 0.94899 0.99347 0.88774 1.19880 0.93213 0.93705 0.96640 1.21033 0.98037 1.00132 0.91891 1.21288 0.98838 0.96954 0.96501 1.18376 0.97323 0.98846 0.84107 1.84892 1.69360 1.60400 1.15307 1.18023 0.90936 0.93233 0.92877 1.91469 1.66460 1.65113 1.88676 1.20977 1.01496 0.99719 0.92981 0.93345 0.94917 0.91136 0.90911 0.93619 0.93409 0.92894 0.89831 0.96234 0.95145 0.99156 0.93028 0.89911 0.94632 0.84516 0.84707 0.75891 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.89 37.16 0.33 -1.95 16 2 C -0.10 -1.66 2.68 -90.62 -0.24 -1.90 16 3 C -0.14 -2.14 9.19 37.16 0.34 -1.80 16 4 C 0.07 1.23 3.94 -3.83 -0.02 1.21 16 5 N -0.53 -10.38 3.86 -237.52 -0.92 -11.30 16 6 C 0.19 4.72 4.68 -4.97 -0.02 4.70 16 7 C -0.50 -13.45 8.13 -34.44 -0.28 -13.73 16 8 H 0.07 1.80 7.32 -52.49 -0.38 1.42 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 11 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.09 1.41 5.04 -4.97 -0.03 1.39 16 16 C -0.03 -0.48 3.69 -104.60 -0.39 -0.86 16 17 C -0.09 -1.20 9.72 -39.59 -0.38 -1.59 16 18 C -0.12 -1.39 9.98 -39.45 -0.39 -1.79 16 19 C 0.06 0.75 6.71 -39.18 -0.26 0.49 16 20 O -0.49 -5.60 13.37 -19.62 -0.26 -5.86 16 21 C 0.07 0.95 7.26 -39.30 -0.29 0.66 16 22 F -0.14 -1.99 17.11 2.25 0.04 -1.95 16 23 C -0.13 -1.82 7.16 -39.54 -0.28 -2.10 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 1.35 7.77 -51.93 -0.40 0.94 16 27 H 0.07 1.20 3.92 -51.93 -0.20 1.00 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.78 6.66 -51.93 -0.35 1.43 16 32 H 0.02 0.35 7.58 -51.93 -0.39 -0.05 16 33 H 0.03 0.79 7.88 -51.93 -0.41 0.38 16 34 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.08 1.32 7.84 -51.93 -0.41 0.91 16 37 H 0.04 0.57 7.68 -51.93 -0.40 0.17 16 38 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.39 2.44 9.06 45.56 0.41 2.85 16 41 H 0.13 1.77 8.05 -52.49 -0.42 1.34 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -29.68 338.03 -7.81 -37.49 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.47 Total: 1.40 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -2.01 Total: -15.84 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.18 Total: -36.54 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.26 Total: -5.86 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.68 -7.81 -37.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891465071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.268 kcal (2) G-P(sol) polarization free energy of solvation -29.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds