Wall clock time and date at job start Tue Mar 31 2020 05:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 C 1.53003 * 109.47713 * 120.00368 * 2 1 3 5 5 N 1.46895 * 109.47009 * 65.41263 * 4 2 1 6 6 C 1.46899 * 111.00240 * 212.69230 * 5 4 2 7 7 C 1.50704 * 109.47084 * 66.04713 * 6 5 4 8 8 H 1.07999 * 119.99899 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99973 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99592 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00005 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47186 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47123 * 119.99715 * 11 9 7 14 14 H 1.48497 * 109.47187 * 239.99916 * 11 9 7 15 15 C 1.46904 * 111.00204 * 88.73622 * 5 4 2 16 16 C 1.50700 * 109.47148 * 290.02744 * 15 5 4 17 17 C 1.38270 * 119.93430 * 277.15208 * 16 15 5 18 18 C 1.38183 * 120.09207 * 179.72735 * 17 16 15 19 19 C 1.38657 * 119.96764 * 0.52286 * 18 17 16 20 20 O 1.35961 * 120.05929 * 179.75151 * 19 18 17 21 21 C 1.38900 * 119.87686 * 359.47888 * 19 18 17 22 22 F 1.35099 * 120.04840 * 180.27640 * 21 19 18 23 23 C 1.38253 * 119.93833 * 97.12642 * 16 15 5 24 24 H 1.09004 * 109.46699 * 299.99495 * 1 2 3 25 25 H 1.09000 * 109.47169 * 59.99793 * 1 2 3 26 26 H 1.09004 * 109.46681 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47148 * 240.00778 * 2 1 3 28 28 H 1.08997 * 109.47842 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47385 * 300.00691 * 3 2 1 30 30 H 1.09004 * 109.46855 * 60.00600 * 3 2 1 31 31 H 1.09001 * 109.46570 * 305.41624 * 4 2 1 32 32 H 1.08994 * 109.47040 * 185.41240 * 4 2 1 33 33 H 1.08995 * 109.47256 * 186.04645 * 6 5 4 34 34 H 1.08995 * 109.46762 * 306.04889 * 6 5 4 35 35 H 0.97008 * 119.99409 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.47408 * 170.02116 * 15 5 4 37 37 H 1.09004 * 109.46434 * 50.01878 * 15 5 4 38 38 H 1.07997 * 119.95133 * 359.97154 * 17 16 15 39 39 H 1.07994 * 120.01081 * 180.25472 * 18 17 16 40 40 H 0.96699 * 113.99895 * 269.72554 * 20 19 18 41 41 H 1.07995 * 119.98707 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6601 -2.1388 1.1856 6 6 1.4026 -2.6757 2.5285 7 6 0.1866 -2.0044 3.1131 8 1 -0.3418 -1.2538 2.5442 9 6 -0.2507 -2.3478 4.3748 10 7 0.3931 -3.2616 5.0678 11 14 -1.7576 -1.5153 5.0998 12 1 -2.2966 -0.5322 4.1260 13 1 -2.7936 -2.5374 5.3954 14 1 -1.3809 -0.8151 6.3540 15 6 2.6859 -2.9283 0.4908 16 6 2.6827 -2.5774 -0.9748 17 6 1.7727 -3.1771 -1.8258 18 6 1.7632 -2.8537 -3.1692 19 6 2.6743 -1.9346 -3.6668 20 8 2.6699 -1.6187 -4.9892 21 6 3.5879 -1.3329 -2.8108 22 9 4.4735 -0.4328 -3.2909 23 6 3.5892 -1.6562 -1.4658 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.5998 -0.2666 2.1365 32 1 3.1258 -0.6381 1.2989 33 1 1.2286 -3.7497 2.4632 34 1 2.2650 -2.4854 3.1673 35 1 0.0851 -3.5035 5.9553 36 1 2.4705 -3.9900 0.6108 37 1 3.6649 -2.7058 0.9154 38 1 1.0659 -3.8964 -1.4392 39 1 1.0492 -3.3198 -3.8319 40 1 3.2447 -2.1783 -5.5292 41 1 4.2989 -1.1892 -0.7991 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891465071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:41 Heat of formation + Delta-G solvation = -87.981330 kcal Electronic energy + Delta-G solvation = -22836.294124 eV Core-core repulsion = 19436.777364 eV Total energy + Delta-G solvation = -3399.516760 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.88943 -40.88588 -39.14353 -37.42976 -35.56848 -34.46869 -31.94158 -31.41254 -28.90484 -27.86854 -27.33079 -25.54748 -23.90195 -23.05259 -21.94505 -20.82184 -19.55739 -18.50310 -17.86434 -17.67759 -17.04357 -16.78320 -16.18815 -16.10882 -15.82850 -15.51029 -15.00040 -14.86559 -14.75741 -14.32563 -14.19030 -13.82980 -13.53534 -13.38261 -13.02009 -12.98780 -12.89641 -12.72078 -12.61637 -12.38909 -12.27906 -11.89595 -11.68802 -11.53497 -11.39905 -11.36350 -11.11089 -10.58247 -9.78228 -9.44517 -8.96221 -8.16452 -6.23709 0.07737 0.19179 1.40866 1.42841 1.54992 2.40090 2.49066 2.99532 3.16986 3.33258 3.43370 3.75570 3.84644 4.08675 4.19063 4.26808 4.27121 4.43316 4.53250 4.64963 4.68732 4.84882 4.88179 4.92966 4.99256 5.01168 5.07520 5.11519 5.16547 5.22162 5.25228 5.30759 5.39060 5.57232 5.61917 5.67909 5.74197 5.79011 6.11515 6.39468 6.67440 6.75852 6.93594 7.45246 8.94588 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025136 B = 0.004645 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.683538 B = 6026.619114 C = 6321.644871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 C -0.142 4.142 4 C 0.071 3.929 5 N -0.526 5.526 6 C 0.209 3.791 7 C -0.511 4.511 8 H 0.066 0.934 9 C 0.004 3.996 10 N -0.935 5.935 11 Si 0.959 3.041 12 H -0.265 1.265 13 H -0.280 1.280 14 H -0.282 1.282 15 C 0.088 3.912 16 C -0.045 4.045 17 C -0.092 4.092 18 C -0.110 4.110 19 C 0.069 3.931 20 O -0.499 6.499 21 C 0.056 3.944 22 F -0.144 7.144 23 C -0.131 4.131 24 H 0.034 0.966 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.027 0.973 33 H 0.010 0.990 34 H -0.039 1.039 35 H 0.262 0.738 36 H 0.082 0.918 37 H 0.037 0.963 38 H 0.141 0.859 39 H 0.161 0.839 40 H 0.410 0.590 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.506 2.131 -17.328 18.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.112 4.112 3 C -0.200 4.200 4 C -0.058 4.058 5 N -0.250 5.250 6 C 0.083 3.917 7 C -0.549 4.549 8 H 0.084 0.916 9 C -0.194 4.194 10 N -0.576 5.576 11 Si 0.784 3.216 12 H -0.189 1.189 13 H -0.206 1.206 14 H -0.208 1.208 15 C -0.040 4.040 16 C -0.046 4.046 17 C -0.111 4.111 18 C -0.129 4.129 19 C 0.024 3.976 20 O -0.311 6.311 21 C 0.036 3.964 22 F -0.123 7.123 23 C -0.150 4.150 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.028 0.972 34 H -0.021 1.021 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.159 0.841 39 H 0.179 0.821 40 H 0.269 0.731 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.710 2.468 -17.274 18.074 hybrid contribution 0.671 0.061 1.239 1.411 sum 5.381 2.528 -16.034 17.101 Atomic orbital electron populations 1.21583 0.95489 1.01411 0.99829 1.21319 0.96186 0.95604 0.98052 1.21781 1.00731 0.95736 1.01708 1.22089 0.96532 0.88758 0.98385 1.62007 1.41374 1.02118 1.19495 1.19417 0.94123 0.94477 0.83725 1.21512 1.11644 1.21741 1.00005 0.91562 1.25784 1.00048 0.95947 0.97592 1.70084 1.41921 1.33109 1.12480 0.85488 0.79385 0.78516 0.78193 1.18878 1.20589 1.20815 1.21129 0.93865 0.98863 0.90138 1.19593 0.94697 0.95162 0.95171 1.21144 0.97571 0.99918 0.92432 1.21481 0.98832 0.96437 0.96120 1.18457 0.96551 0.97954 0.84683 1.84828 1.70179 1.61364 1.14779 1.18128 0.91519 0.93745 0.92996 1.91454 1.66740 1.65386 1.88681 1.20937 1.01324 0.99477 0.93280 0.94663 0.92914 0.93108 0.90216 0.92690 0.92015 0.93119 0.92860 0.95483 0.97236 1.02096 0.92917 0.89952 0.94471 0.84133 0.82132 0.73088 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 8.89 71.98 0.64 -3.62 16 2 C -0.09 -2.98 2.68 -10.79 -0.03 -3.01 16 3 C -0.14 -3.92 9.19 71.98 0.66 -3.26 16 4 C 0.07 2.66 3.94 86.31 0.34 2.99 16 5 N -0.53 -21.15 3.86 -905.38 -3.50 -24.64 16 6 C 0.21 10.57 4.68 85.56 0.40 10.97 16 7 C -0.51 -27.87 8.13 25.60 0.21 -27.66 16 8 H 0.07 3.57 7.32 -2.91 -0.02 3.55 16 9 C 0.00 0.22 5.46 84.66 0.46 0.68 16 10 N -0.93 -55.21 13.29 21.45 0.28 -54.92 16 11 Si 0.96 43.91 29.54 68.60 2.03 45.93 16 12 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 14 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 15 C 0.09 2.89 5.04 85.56 0.43 3.32 16 16 C -0.05 -1.24 3.69 -19.85 -0.07 -1.32 16 17 C -0.09 -2.23 9.72 22.26 0.22 -2.01 16 18 C -0.11 -2.29 9.98 22.36 0.22 -2.07 16 19 C 0.07 1.56 6.71 22.53 0.15 1.71 16 20 O -0.50 -9.72 13.37 -93.11 -1.24 -10.96 16 21 C 0.06 1.41 7.26 22.45 0.16 1.58 16 22 F -0.14 -3.85 17.11 44.97 0.77 -3.08 16 23 C -0.13 -3.40 7.16 22.30 0.16 -3.24 16 24 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 1.90 7.77 -2.38 -0.02 1.88 16 27 H 0.08 2.49 3.92 -2.39 -0.01 2.48 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.05 2.32 6.66 -2.39 -0.02 2.31 16 32 H 0.03 0.96 7.58 -2.39 -0.02 0.94 16 33 H 0.01 0.52 7.88 -2.39 -0.02 0.50 16 34 H -0.04 -2.15 8.12 -2.39 -0.02 -2.17 16 35 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 36 H 0.08 2.68 7.84 -2.39 -0.02 2.66 16 37 H 0.04 1.20 7.68 -2.38 -0.02 1.19 16 38 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 40 H 0.41 3.75 9.06 -74.06 -0.67 3.07 16 41 H 0.14 3.41 8.05 -2.91 -0.02 3.39 16 Total: -1.00 -63.65 338.03 2.65 -61.00 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.35 Total: 11.60 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 3.95 Total: -24.92 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -3.21 Total: -79.57 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -1.24 Total: -10.96 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.77 Total: -3.08 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -63.65 2.65 -61.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891465071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.977 kcal (2) G-P(sol) polarization free energy of solvation -63.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds