Wall clock time and date at job start Tue Mar 31 2020 05:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33108 * 120.00390 * 2 1 4 4 F 1.35104 * 120.00042 * 7.77361 * 3 2 1 5 5 C 1.47297 * 120.00173 * 187.77711 * 3 2 1 6 6 O 1.21608 * 119.99921 * 6.05019 * 5 3 2 7 7 N 1.34779 * 120.00077 * 186.05965 * 5 3 2 8 8 C 1.46503 * 119.99669 * 354.76306 * 7 5 3 9 9 C 1.50697 * 109.46865 * 83.49815 * 8 7 5 10 10 H 1.08001 * 119.99986 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00003 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99721 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00013 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47118 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47280 * 119.99833 * 13 11 9 16 16 H 1.48493 * 109.46811 * 239.99747 * 13 11 9 17 17 C 1.46503 * 120.00304 * 174.77170 * 7 5 3 18 18 C 1.52999 * 109.47019 * 94.69677 * 17 7 5 19 19 C 1.53000 * 117.49515 * 243.62299 * 18 17 7 20 20 C 1.53000 * 117.49535 * 175.00165 * 18 17 7 21 21 C 1.50702 * 119.99781 * 180.02562 * 2 1 3 22 22 C 1.53002 * 117.49947 * 358.90025 * 21 2 1 23 23 C 1.52996 * 60.00048 * 107.48851 * 22 21 2 24 24 H 1.09002 * 109.46550 * 270.00319 * 1 2 3 25 25 H 1.08997 * 109.46965 * 29.99646 * 1 2 3 26 26 H 1.08998 * 109.47333 * 149.99798 * 1 2 3 27 27 H 1.09000 * 109.46626 * 203.49542 * 8 7 5 28 28 H 1.08995 * 109.47404 * 323.49859 * 8 7 5 29 29 H 0.97005 * 120.00165 * 180.02562 * 12 11 9 30 30 H 1.08997 * 109.47137 * 214.70213 * 17 7 5 31 31 H 1.09003 * 109.46735 * 334.69885 * 17 7 5 32 32 H 1.09000 * 115.55203 * 29.33387 * 18 17 7 33 33 H 1.08998 * 117.50146 * 0.02562 * 19 18 17 34 34 H 1.09006 * 117.49851 * 145.02437 * 19 18 17 35 35 H 1.08996 * 117.50243 * 214.97848 * 20 18 17 36 36 H 1.09004 * 117.49949 * 0.02562 * 20 18 17 37 37 H 1.08997 * 115.56517 * 213.21036 * 21 2 1 38 38 H 1.08996 * 117.49996 * 214.97611 * 22 21 2 39 39 H 1.09003 * 117.49630 * 0.02562 * 22 21 2 40 40 H 1.09003 * 117.50017 * 252.51081 * 23 22 21 41 41 H 1.09004 * 117.50000 * 107.49109 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1726 1.1527 0.0000 4 9 1.5065 2.3174 0.1583 5 6 3.6355 1.1585 -0.1726 6 8 4.2221 0.1235 -0.4247 7 7 4.3238 2.3109 -0.0510 8 6 3.6081 3.5750 0.1387 9 6 3.2760 3.7501 1.5981 10 1 3.5691 2.9954 2.3129 11 6 2.5988 4.8743 2.0210 12 7 2.2433 5.7939 1.1507 13 14 2.1877 5.0917 3.8302 14 1 2.6943 3.9249 4.5966 15 1 2.8264 6.3327 4.3374 16 1 0.7152 5.1899 3.9948 17 6 5.7877 2.2993 -0.1086 18 6 6.2441 2.5955 -1.5385 19 6 7.0110 1.4967 -2.2771 20 6 7.7470 2.7441 -1.7838 21 6 2.2605 -1.3051 -0.0006 22 6 1.4386 -2.5954 0.0249 23 6 2.1643 -2.1758 -1.2550 24 1 -0.3632 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 4.2368 4.4016 -0.1926 28 1 2.6874 3.5624 -0.4445 29 1 1.7672 6.5850 1.4482 30 1 6.1838 3.0599 0.5642 31 1 6.1554 1.3190 0.1945 32 1 5.5739 3.2236 -2.1254 33 1 7.1899 0.5627 -1.7445 34 1 6.8452 1.4016 -3.3503 35 1 8.0655 3.4695 -2.5323 36 1 8.4106 2.6304 -0.9265 37 1 3.2081 -1.3014 0.5380 38 1 1.8455 -3.4405 0.5802 39 1 0.3528 -2.5002 0.0416 40 1 1.5560 -1.8046 -2.0799 41 1 3.0487 -2.7449 -1.5417 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900567482.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:35 Heat of formation + Delta-G solvation = -4.843233 kcal Electronic energy + Delta-G solvation = -22969.281801 eV Core-core repulsion = 19573.370179 eV Total energy + Delta-G solvation = -3395.911622 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.07078 -39.32234 -37.74605 -36.73461 -34.66408 -32.48969 -32.40468 -28.40543 -27.51650 -26.01791 -23.25136 -22.43642 -22.12439 -22.04907 -20.82292 -19.58093 -17.97264 -16.81664 -16.49380 -16.15903 -15.67875 -15.07254 -14.72271 -14.45771 -14.28172 -13.95811 -13.68412 -13.51272 -13.14733 -12.77669 -12.40957 -12.18207 -11.99222 -11.94310 -11.53418 -11.28133 -11.26343 -11.12252 -10.99079 -10.86613 -10.56240 -10.38199 -10.29541 -10.21535 -9.98567 -9.67302 -9.57712 -8.91053 -8.43139 -8.21656 -7.64011 -6.09330 -4.14197 1.66397 3.26173 3.34254 3.38135 3.67372 3.75505 4.14119 4.20270 4.39627 4.74456 4.97866 5.07501 5.11710 5.22807 5.25631 5.26718 5.32769 5.39187 5.54306 5.71480 5.75363 5.81002 5.84003 5.85710 6.02744 6.04790 6.13012 6.18251 6.20557 6.30211 6.35009 6.42716 6.55510 6.61512 6.80152 6.97876 7.33393 7.56982 7.83316 8.13925 8.25676 8.78298 8.93568 9.51192 10.98486 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.010822 B = 0.008095 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.593679 B = 3458.254662 C = 5522.723431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.096 4.096 3 C 0.032 3.968 4 F -0.102 7.102 5 C 0.542 3.458 6 O -0.547 6.547 7 N -0.582 5.582 8 C 0.219 3.781 9 C -0.526 4.526 10 H 0.057 0.943 11 C 0.068 3.932 12 N -0.891 5.891 13 Si 0.893 3.107 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.150 3.850 18 C -0.160 4.160 19 C -0.174 4.174 20 C -0.180 4.180 21 C -0.089 4.089 22 C -0.191 4.191 23 C -0.159 4.159 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.059 0.941 29 H 0.263 0.737 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.130 0.870 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 -10.396 -4.557 11.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.100 4.100 3 C 0.010 3.990 4 F -0.080 7.080 5 C 0.330 3.670 6 O -0.429 6.429 7 N -0.311 5.311 8 C 0.100 3.900 9 C -0.565 4.565 10 H 0.076 0.924 11 C -0.135 4.135 12 N -0.530 5.530 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 C 0.026 3.974 18 C -0.179 4.179 19 C -0.211 4.211 20 C -0.218 4.218 21 C -0.107 4.107 22 C -0.228 4.228 23 C -0.196 4.196 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.148 0.852 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.784 -10.637 -4.686 11.759 hybrid contribution -0.419 0.744 1.047 1.351 sum 1.365 -9.892 -3.639 10.628 Atomic orbital electron populations 1.20768 0.90834 1.02792 1.02789 1.21601 0.95745 0.92551 1.00092 1.19412 0.90458 0.82266 1.06867 1.91596 1.79628 1.44743 1.92050 1.18266 0.86609 0.84010 0.78101 1.90679 1.69757 1.31797 1.50692 1.48219 1.06024 1.09006 1.67828 1.19983 0.93174 0.78970 0.97914 1.21396 1.36900 1.05502 0.92675 0.92433 1.24855 0.95369 0.95599 0.97660 1.69929 1.39477 1.09790 1.33762 0.86524 0.78219 0.78044 0.85184 1.19770 1.20948 1.20851 1.20908 0.80740 1.02140 0.93597 1.22767 0.94018 1.02543 0.98560 1.22950 1.04560 0.93519 1.00070 1.22908 0.94766 1.00827 1.03300 1.21020 0.99898 0.86973 1.02813 1.23115 0.99014 0.98650 1.02043 1.22785 1.02342 1.03023 0.91485 0.90703 0.91058 0.91207 0.94742 0.92308 0.92763 0.90051 0.90597 0.87786 0.88752 0.89518 0.89141 0.88936 0.85192 0.88925 0.88795 0.89273 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 9.25 36.01 0.33 -1.30 16 2 C -0.10 -1.67 5.81 -101.13 -0.59 -2.25 16 3 C 0.03 0.66 7.00 -37.69 -0.26 0.40 16 4 F -0.10 -2.35 11.72 2.25 0.03 -2.32 16 5 C 0.54 11.57 7.47 -12.58 -0.09 11.47 16 6 O -0.55 -11.52 12.93 5.27 0.07 -11.45 16 7 N -0.58 -12.57 2.48 -176.38 -0.44 -13.01 16 8 C 0.22 5.38 4.78 -5.19 -0.02 5.36 16 9 C -0.53 -14.08 7.97 -34.44 -0.27 -14.35 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 12 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 13 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.15 2.77 5.67 -4.04 -0.02 2.75 16 18 C -0.16 -2.61 6.01 -90.62 -0.54 -3.16 16 19 C -0.17 -2.48 10.18 -26.73 -0.27 -2.75 16 20 C -0.18 -2.40 10.25 -26.73 -0.27 -2.67 16 21 C -0.09 -1.41 4.30 -91.77 -0.39 -1.80 16 22 C -0.19 -2.35 9.79 -26.73 -0.26 -2.61 16 23 C -0.16 -2.14 10.23 -26.73 -0.27 -2.42 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.07 1.04 7.67 -51.93 -0.40 0.64 16 26 H 0.07 0.81 6.34 -51.93 -0.33 0.48 16 27 H 0.03 0.89 8.02 -51.93 -0.42 0.47 16 28 H 0.06 1.54 5.61 -51.93 -0.29 1.25 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.08 1.50 8.11 -51.93 -0.42 1.08 16 31 H 0.08 1.38 7.09 -51.93 -0.37 1.01 16 32 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 33 H 0.09 1.36 8.03 -51.93 -0.42 0.94 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.13 2.31 6.33 -51.93 -0.33 1.98 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 1.04 6.29 -51.93 -0.33 0.71 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 340.22 15.07 5.13 5.13 Total: -1.00 -28.67 340.22 -8.78 -37.45 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.23 Total: 4.12 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -3.05 Total: -11.59 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.30 Total: -37.49 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.07 Total: -11.45 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.03 Total: -2.32 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.67 -8.78 -37.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900567482.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.606 kcal (2) G-P(sol) polarization free energy of solvation -28.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds