Wall clock time and date at job start Tue Mar 31 2020 05:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33115 * 120.00183 * 2 1 4 4 F 1.35101 * 120.00181 * 174.83234 * 3 2 1 5 5 C 1.47296 * 119.99912 * 354.83012 * 3 2 1 6 6 O 1.21604 * 120.00342 * 94.85421 * 5 3 2 7 7 N 1.34774 * 119.99722 * 274.85394 * 5 3 2 8 8 C 1.46500 * 119.99906 * 174.80279 * 7 5 3 9 9 C 1.50706 * 109.47227 * 90.00112 * 8 7 5 10 10 H 1.07997 * 119.99730 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00307 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99943 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00148 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47009 * 90.00234 * 13 11 9 15 15 H 1.48500 * 109.47161 * 209.99928 * 13 11 9 16 16 H 1.48499 * 109.47019 * 330.00023 * 13 11 9 17 17 C 1.46504 * 120.00227 * 355.08030 * 7 5 3 18 18 C 1.52997 * 109.47050 * 274.75059 * 17 7 5 19 19 C 1.53006 * 117.49892 * 243.62273 * 18 17 7 20 20 C 1.52999 * 117.49874 * 174.99839 * 18 17 7 21 21 C 1.50700 * 120.00131 * 179.97438 * 2 1 3 22 22 C 1.53010 * 117.49460 * 8.75267 * 21 2 1 23 23 C 1.53000 * 117.49921 * 300.09353 * 21 2 1 24 24 H 1.08995 * 109.47172 * 94.97650 * 1 2 3 25 25 H 1.09000 * 109.47589 * 214.97821 * 1 2 3 26 26 H 1.09003 * 109.46892 * 334.97464 * 1 2 3 27 27 H 1.08996 * 109.47461 * 209.99764 * 8 7 5 28 28 H 1.09003 * 109.47124 * 330.00312 * 8 7 5 29 29 H 0.96994 * 119.99822 * 180.02562 * 12 11 9 30 30 H 1.08996 * 109.47069 * 34.75196 * 17 7 5 31 31 H 1.09001 * 109.46844 * 154.75268 * 17 7 5 32 32 H 1.08997 * 115.55304 * 29.32376 * 18 17 7 33 33 H 1.09003 * 117.49613 * 359.97438 * 19 18 17 34 34 H 1.09001 * 117.49774 * 145.02301 * 19 18 17 35 35 H 1.08999 * 117.50010 * 214.97501 * 20 18 17 36 36 H 1.08997 * 117.50206 * 0.02562 * 20 18 17 37 37 H 1.09000 * 115.55373 * 154.41716 * 21 2 1 38 38 H 1.08996 * 117.50202 * 359.97438 * 22 21 2 39 39 H 1.08996 * 117.49571 * 145.02378 * 22 21 2 40 40 H 1.09008 * 117.49897 * 214.97456 * 23 21 2 41 41 H 1.08992 * 117.49924 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1726 1.1528 0.0000 4 9 3.5195 1.1552 0.1054 5 6 1.4406 2.4258 -0.1149 6 8 1.1336 3.0433 0.8867 7 7 1.1112 2.9063 -1.3303 8 6 0.2857 4.1114 -1.4424 9 6 1.1748 5.3276 -1.4811 10 1 2.2475 5.2141 -1.4281 11 6 0.6189 6.5850 -1.5844 12 7 -0.6874 6.7233 -1.6485 13 14 1.7210 8.0925 -1.6317 14 1 2.0733 8.4041 -3.0403 15 1 1.0053 9.2480 -1.0334 16 1 2.9605 7.8240 -0.8592 17 6 1.5734 2.2201 -2.5393 18 6 2.9794 2.7069 -2.8960 19 6 3.1550 3.4473 -4.2234 20 6 3.6884 2.0219 -4.0660 21 6 2.2605 -1.3051 0.0006 22 6 1.4520 -2.5877 -0.2054 23 6 2.0244 -2.2566 1.1752 24 1 -0.3633 -0.0891 -1.0237 25 1 -0.3634 -0.8420 0.5891 26 1 -0.3633 0.9312 0.4347 27 1 -0.3046 4.0637 -2.3574 28 1 -0.3813 4.1762 -0.5826 29 1 -1.0785 7.6079 -1.7215 30 1 1.5955 1.1450 -2.3609 31 1 0.8936 2.4378 -3.3630 32 1 3.5929 3.0291 -2.0547 33 1 2.2690 3.5872 -4.8426 34 1 3.8842 4.2569 -4.2554 35 1 4.7685 1.8939 -3.9946 36 1 3.1532 1.2248 -4.5819 37 1 3.2637 -1.2689 -0.4241 38 1 0.3751 -2.4875 -0.3409 39 1 1.9235 -3.3954 -0.7651 40 1 2.8723 -2.8468 1.5231 41 1 1.3245 -1.9385 1.9477 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900567483.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:37 Heat of formation + Delta-G solvation = -17.364767 kcal Electronic energy + Delta-G solvation = -22862.032575 eV Core-core repulsion = 19465.577979 eV Total energy + Delta-G solvation = -3396.454597 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.59372 -39.37069 -37.91302 -37.05338 -34.45803 -33.26007 -32.37710 -28.23216 -27.18226 -26.14606 -24.36757 -22.52311 -22.35295 -22.02696 -20.64293 -19.50707 -18.27224 -16.97738 -16.94781 -16.47986 -15.99174 -15.08177 -14.87247 -14.64738 -14.37877 -14.22268 -14.09909 -13.39387 -13.11619 -13.03185 -12.49093 -12.33279 -12.11633 -12.07377 -11.66391 -11.47003 -11.42411 -11.25363 -11.19843 -10.94266 -10.89734 -10.65023 -10.56804 -10.28609 -9.97480 -9.64629 -9.54756 -9.18164 -8.45577 -8.38488 -7.81637 -6.04572 -4.07468 1.63854 3.00139 3.30966 3.37814 3.43163 3.64053 3.78093 4.15346 4.42764 4.50362 4.61296 4.74577 4.83329 4.97183 5.01178 5.11889 5.23287 5.31090 5.38709 5.46797 5.60756 5.65009 5.68860 5.74633 5.83917 5.85751 5.91629 5.95424 6.00823 6.04556 6.26086 6.31914 6.42121 6.58345 6.62782 6.94584 7.32199 7.43284 7.91678 8.19593 8.21599 8.73592 8.97535 9.56755 11.04091 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020014 B = 0.005414 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.694450 B = 5170.391319 C = 5812.324568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.113 4.113 3 C 0.036 3.964 4 F -0.130 7.130 5 C 0.538 3.462 6 O -0.516 6.516 7 N -0.577 5.577 8 C 0.247 3.753 9 C -0.517 4.517 10 H 0.059 0.941 11 C 0.062 3.938 12 N -0.897 5.897 13 Si 0.896 3.104 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.142 3.858 18 C -0.156 4.156 19 C -0.163 4.163 20 C -0.187 4.187 21 C -0.117 4.117 22 C -0.171 4.171 23 C -0.169 4.169 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.036 0.964 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.344 -17.260 -2.529 17.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.116 4.116 3 C 0.013 3.987 4 F -0.108 7.108 5 C 0.322 3.678 6 O -0.393 6.393 7 N -0.307 5.307 8 C 0.128 3.872 9 C -0.556 4.556 10 H 0.077 0.923 11 C -0.140 4.140 12 N -0.536 5.536 13 Si 0.724 3.276 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 C 0.018 3.982 18 C -0.175 4.175 19 C -0.200 4.200 20 C -0.224 4.224 21 C -0.135 4.135 22 C -0.208 4.208 23 C -0.206 4.206 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.132 0.868 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.045 -16.743 -2.012 17.342 hybrid contribution 1.032 1.007 -0.102 1.446 sum 5.077 -15.736 -2.114 16.669 Atomic orbital electron populations 1.20747 0.89870 1.03594 1.02836 1.21495 0.96392 0.91495 1.02176 1.19654 0.77581 0.94937 1.06524 1.91466 1.28943 1.97157 1.93255 1.18132 0.80957 0.83942 0.84802 1.90837 1.54332 1.58021 1.36088 1.48238 1.50658 1.28331 1.03470 1.19413 0.89925 0.79599 0.98254 1.21364 0.93487 0.90590 1.50148 0.92259 1.24896 0.95027 0.98890 0.95199 1.69922 1.09692 1.23510 1.50503 0.86523 0.80697 0.82343 0.78057 1.20653 1.21146 1.19911 1.21087 0.93329 0.95446 0.88334 1.22702 0.97732 1.04175 0.92911 1.22903 1.03060 0.94132 0.99931 1.22946 0.99907 0.96396 1.03186 1.20927 0.99870 0.88189 1.04483 1.23021 1.00277 0.97765 0.99687 1.22990 1.03604 1.02286 0.91755 0.90565 0.90867 0.90667 0.94597 0.93784 0.92765 0.91239 0.89919 0.87939 0.88644 0.89182 0.89324 0.89137 0.86805 0.88186 0.88484 0.88480 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 8.75 36.00 0.32 -1.15 16 2 C -0.11 -1.60 5.21 -101.13 -0.53 -2.13 16 3 C 0.04 0.62 5.56 -37.68 -0.21 0.41 16 4 F -0.13 -2.31 16.52 2.25 0.04 -2.27 16 5 C 0.54 11.60 5.53 -12.58 -0.07 11.53 16 6 O -0.52 -13.39 16.71 5.27 0.09 -13.30 16 7 N -0.58 -12.11 2.47 -176.38 -0.43 -12.54 16 8 C 0.25 6.27 5.16 -5.19 -0.03 6.24 16 9 C -0.52 -14.43 9.39 -34.44 -0.32 -14.75 16 10 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 13 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 17 C 0.14 2.37 5.54 -4.04 -0.02 2.35 16 18 C -0.16 -2.57 5.98 -90.62 -0.54 -3.11 16 19 C -0.16 -2.49 10.18 -26.72 -0.27 -2.77 16 20 C -0.19 -2.43 10.25 -26.73 -0.27 -2.70 16 21 C -0.12 -1.33 5.70 -91.77 -0.52 -1.85 16 22 C -0.17 -1.50 9.79 -26.68 -0.26 -1.76 16 23 C -0.17 -1.63 10.07 -26.69 -0.27 -1.89 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.77 6.89 -51.93 -0.36 0.41 16 26 H 0.07 1.18 6.84 -51.93 -0.36 0.82 16 27 H 0.04 0.91 7.85 -51.93 -0.41 0.50 16 28 H 0.04 1.25 7.50 -51.93 -0.39 0.86 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.07 1.00 6.52 -51.93 -0.34 0.66 16 31 H 0.08 1.32 7.57 -51.93 -0.39 0.92 16 32 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 33 H 0.10 1.43 8.03 -51.93 -0.42 1.01 16 34 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.11 1.30 7.84 -51.93 -0.41 0.90 16 38 H 0.10 0.83 6.67 -51.93 -0.35 0.48 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 41 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 349.38 15.07 5.27 5.27 Total: -1.00 -31.64 349.38 -8.77 -40.41 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.34 Total: 0.98 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -3.10 Total: -9.94 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.30 Total: -38.09 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.30 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.64 -8.77 -40.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900567483.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.050 kcal (2) G-P(sol) polarization free energy of solvation -31.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds