Wall clock time and date at job start Tue Mar 31 2020 05:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33251 * 120.00361 * 2 1 4 4 F 1.35100 * 120.00213 * 5.38572 * 3 2 1 5 5 C 1.47144 * 119.99965 * 185.38023 * 3 2 1 6 6 O 1.21650 * 120.00596 * 268.84332 * 5 3 2 7 7 N 1.34783 * 119.99682 * 88.85027 * 5 3 2 8 8 C 1.36811 * 120.00019 * 184.29533 * 7 5 3 9 9 H 1.07997 * 119.99866 * 138.42157 * 8 7 5 10 10 C 1.39077 * 119.99924 * 318.43018 * 8 7 5 11 11 N 1.31347 * 119.99988 * 157.55483 * 10 8 7 12 12 Si 1.86802 * 119.99795 * 337.55566 * 10 8 7 13 13 H 1.48496 * 109.47217 * 95.53125 * 12 10 8 14 14 H 1.48504 * 109.46832 * 215.53003 * 12 10 8 15 15 H 1.48500 * 109.46849 * 335.52443 * 12 10 8 16 16 C 1.46497 * 119.99911 * 4.01123 * 7 5 3 17 17 C 1.54264 * 110.03482 * 238.38407 * 16 7 5 18 18 C 1.54965 * 104.16093 * 217.14025 * 17 16 7 19 19 C 1.54889 * 102.77805 * 37.88851 * 18 17 16 20 20 C 1.53882 * 110.03028 * 121.16637 * 16 7 5 21 21 C 1.50707 * 119.99589 * 179.97438 * 2 1 3 22 22 C 1.52996 * 117.50168 * 13.80165 * 21 2 1 23 23 C 1.52996 * 117.50037 * 305.17707 * 21 2 1 24 24 H 1.09005 * 109.47037 * 89.99866 * 1 2 3 25 25 H 1.09002 * 109.47690 * 210.00023 * 1 2 3 26 26 H 1.08998 * 109.47055 * 330.00131 * 1 2 3 27 27 H 0.96999 * 120.00115 * 179.97438 * 11 10 8 28 28 H 1.08999 * 110.02012 * 359.77838 * 16 7 5 29 29 H 1.08994 * 110.48889 * 335.78683 * 17 16 7 30 30 H 1.08998 * 110.48528 * 98.43039 * 17 16 7 31 31 H 1.09004 * 110.72066 * 279.57461 * 18 17 16 32 32 H 1.09000 * 110.92640 * 156.29565 * 18 17 16 33 33 H 1.09001 * 110.48833 * 203.41037 * 19 18 17 34 34 H 1.08997 * 110.60086 * 80.81557 * 19 18 17 35 35 H 1.08998 * 110.03506 * 238.57104 * 20 16 7 36 36 H 1.09006 * 110.02961 * 0.02562 * 20 16 7 37 37 H 1.08997 * 115.54771 * 159.50916 * 21 2 1 38 38 H 1.09007 * 117.49643 * 0.02562 * 22 21 2 39 39 H 1.09000 * 117.49990 * 145.01711 * 22 21 2 40 40 H 1.08998 * 117.50447 * 214.98223 * 23 21 2 41 41 H 1.09003 * 117.50085 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1733 1.1539 0.0000 4 9 1.5024 2.3214 0.1098 5 6 3.6399 1.1567 -0.1195 6 8 4.3318 1.1296 0.8807 7 7 4.2167 1.1892 -1.3372 8 6 5.5772 1.1031 -1.4522 9 1 6.0160 0.4958 -2.2301 10 6 6.3952 1.7973 -0.5673 11 7 7.6327 1.4036 -0.3701 12 14 5.7339 3.2898 0.3410 13 1 5.2504 2.8782 1.6833 14 1 6.8150 4.2967 0.4914 15 1 4.6108 3.8808 -0.4301 16 6 3.3863 1.3106 -2.5380 17 6 3.6324 0.1095 -3.4743 18 6 3.5653 0.7185 -4.8977 19 6 4.2538 2.0939 -4.7147 20 6 3.7808 2.5719 -3.3263 21 6 2.2604 -1.3052 0.0006 22 6 1.4723 -2.5761 -0.3226 23 6 1.9365 -2.3074 1.1103 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 8.2033 1.8880 0.2468 28 1 2.3334 1.3580 -2.2603 29 1 4.6160 -0.3224 -3.2903 30 1 2.8541 -0.6422 -3.3431 31 1 2.5301 0.8439 -5.2152 32 1 4.1146 0.1035 -5.6106 33 1 3.9288 2.7892 -5.4886 34 1 5.3382 1.9852 -4.7317 35 1 2.9191 3.2310 -3.4319 36 1 4.5904 3.0934 -2.8156 37 1 3.2932 -1.2519 -0.3437 38 1 0.4088 -2.4681 -0.5361 39 1 1.9864 -3.3592 -0.8798 40 1 2.7561 -2.9138 1.4959 41 1 1.1781 -2.0230 1.8397 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900778243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:39 Heat of formation + Delta-G solvation = -34.839725 kcal Electronic energy + Delta-G solvation = -23857.441498 eV Core-core repulsion = 20460.229131 eV Total energy + Delta-G solvation = -3397.212368 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.44144 -39.45173 -37.74082 -36.94677 -33.62397 -32.77881 -31.82851 -28.20106 -28.04520 -27.18735 -24.70492 -22.73944 -22.18672 -20.87618 -20.28716 -19.44062 -18.47655 -17.45590 -16.61639 -16.17949 -15.55768 -14.94276 -14.87103 -14.41900 -14.18185 -13.95818 -13.85536 -13.20798 -13.05626 -13.02085 -12.75037 -12.30256 -12.10734 -11.94917 -11.55336 -11.37865 -11.19212 -11.04320 -10.84671 -10.67387 -10.61512 -10.57808 -10.25503 -10.19027 -10.08112 -10.02170 -9.85090 -8.70723 -8.56867 -8.09098 -7.66963 -6.27037 -4.00141 1.91323 3.15058 3.49807 3.65899 3.73363 4.12172 4.16145 4.54928 4.66869 4.95336 5.02304 5.06429 5.11664 5.18765 5.26397 5.29715 5.43194 5.49743 5.66563 5.71459 5.75524 5.78229 5.93590 5.95799 6.04702 6.06370 6.08774 6.12502 6.25184 6.31755 6.34263 6.37535 6.48331 6.51805 6.74430 6.83631 6.89377 7.00115 7.76318 7.90046 8.69033 8.78938 9.35526 9.70554 10.76913 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.009207 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.780541 B = 3040.397492 C = 3815.871478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 C 0.039 3.961 4 F -0.140 7.140 5 C 0.463 3.537 6 O -0.528 6.528 7 N -0.432 5.432 8 C -0.347 4.347 9 H 0.101 0.899 10 C 0.099 3.901 11 N -0.853 5.853 12 Si 0.901 3.099 13 H -0.253 1.253 14 H -0.306 1.306 15 H -0.278 1.278 16 C 0.128 3.872 17 C -0.129 4.129 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.130 4.130 21 C -0.104 4.104 22 C -0.175 4.175 23 C -0.166 4.166 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.274 0.726 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.836 -3.778 -5.397 14.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.121 4.121 3 C 0.016 3.984 4 F -0.119 7.119 5 C 0.252 3.748 6 O -0.411 6.411 7 N -0.152 5.152 8 C -0.472 4.472 9 H 0.118 0.882 10 C -0.112 4.112 11 N -0.487 5.487 12 Si 0.732 3.268 13 H -0.179 1.179 14 H -0.235 1.235 15 H -0.204 1.204 16 C 0.023 3.977 17 C -0.167 4.167 18 C -0.159 4.159 19 C -0.154 4.154 20 C -0.169 4.169 21 C -0.122 4.122 22 C -0.212 4.212 23 C -0.203 4.203 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.140 0.860 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.311 -3.733 -4.824 13.739 hybrid contribution -0.406 1.098 0.498 1.272 sum -12.717 -2.635 -4.325 13.688 Atomic orbital electron populations 1.20709 0.91040 1.02778 1.02365 1.21402 0.95448 0.92213 1.03029 1.19872 0.91583 0.81201 1.05708 1.91433 1.79974 1.47132 1.93324 1.18276 0.85489 0.85311 0.85746 1.90684 1.62063 1.52336 1.35988 1.43673 1.06655 1.62269 1.02617 1.18659 0.77597 1.31261 1.19729 0.88174 1.25287 0.94328 0.96824 0.94731 1.69738 1.08220 1.37468 1.33282 0.86543 0.77742 0.79918 0.82641 1.17894 1.23547 1.20363 1.21811 0.93942 0.94940 0.86976 1.22682 1.03044 0.97183 0.93768 1.22438 0.99809 0.96757 0.96874 1.22263 1.00916 0.96040 0.96214 1.22429 1.01296 0.97344 0.95785 1.20849 0.99895 0.87008 1.04476 1.22988 1.00307 0.99036 0.98873 1.22918 1.03491 1.02264 0.91663 0.90888 0.91358 0.91466 0.91656 0.91175 0.89621 0.92253 0.92238 0.91979 0.92608 0.91111 0.92694 0.89877 0.85988 0.88681 0.88590 0.88384 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.04 36.00 0.33 -1.12 16 2 C -0.12 -2.02 5.80 -101.09 -0.59 -2.60 16 3 C 0.04 0.81 5.01 -37.71 -0.19 0.62 16 4 F -0.14 -2.86 16.31 2.25 0.04 -2.82 16 5 C 0.46 11.47 4.06 -12.64 -0.05 11.41 16 6 O -0.53 -15.19 12.28 5.23 0.06 -15.13 16 7 N -0.43 -10.23 2.10 -107.86 -0.23 -10.46 16 8 C -0.35 -9.33 8.22 -15.02 -0.12 -9.45 16 9 H 0.10 2.77 6.80 -52.49 -0.36 2.41 16 10 C 0.10 2.87 4.77 -17.45 -0.08 2.78 16 11 N -0.85 -25.46 13.95 55.50 0.77 -24.69 16 12 Si 0.90 24.56 24.91 -169.99 -4.23 20.33 16 13 H -0.25 -7.34 6.25 56.52 0.35 -6.99 16 14 H -0.31 -8.11 7.11 56.52 0.40 -7.71 16 15 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 16 C 0.13 2.44 3.20 -66.81 -0.21 2.23 16 17 C -0.13 -2.13 6.42 -25.03 -0.16 -2.29 16 18 C -0.12 -1.67 6.91 -24.70 -0.17 -1.84 16 19 C -0.12 -1.78 6.83 -25.07 -0.17 -1.95 16 20 C -0.13 -2.36 6.27 -25.61 -0.16 -2.52 16 21 C -0.10 -1.72 5.57 -91.77 -0.51 -2.23 16 22 C -0.18 -2.18 9.78 -26.73 -0.26 -2.44 16 23 C -0.17 -2.31 9.93 -26.73 -0.27 -2.57 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.75 6.56 -51.93 -0.34 0.41 16 26 H 0.07 0.87 7.48 -51.93 -0.39 0.48 16 27 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 28 H 0.07 1.27 6.24 -51.93 -0.32 0.95 16 29 H 0.09 1.62 6.34 -51.93 -0.33 1.29 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.77 7.33 -51.93 -0.38 1.38 16 37 H 0.12 2.42 7.02 -51.93 -0.36 2.05 16 38 H 0.09 1.02 6.76 -51.92 -0.35 0.66 16 39 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.09 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 325.90 15.07 4.91 4.91 Total: -1.00 -31.56 325.90 -7.53 -39.10 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.24 Total: 0.74 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -2.62 Total: -11.98 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.55 Total: -35.15 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.06 Total: -15.13 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -4.23 Total: 20.33 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.56 -7.53 -39.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900778243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.257 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds