Wall clock time and date at job start Tue Mar 31 2020 05:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33264 * 119.99961 * 2 1 4 4 F 1.35100 * 120.00034 * 172.37482 * 3 2 1 5 5 C 1.47145 * 120.00089 * 352.36813 * 3 2 1 6 6 O 1.21661 * 119.99867 * 335.86916 * 5 3 2 7 7 N 1.34773 * 119.99710 * 155.85748 * 5 3 2 8 8 C 1.36810 * 120.00329 * 354.02588 * 7 5 3 9 9 H 1.08005 * 119.99765 * 125.03521 * 8 7 5 10 10 C 1.39067 * 119.99887 * 305.03982 * 8 7 5 11 11 N 1.31348 * 120.00260 * 3.36144 * 10 8 7 12 12 Si 1.86807 * 119.99851 * 183.36503 * 10 8 7 13 13 H 1.48500 * 109.46843 * 59.99653 * 12 10 8 14 14 H 1.48501 * 109.47152 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46809 * 299.99586 * 12 10 8 16 16 C 1.46507 * 119.99608 * 174.02158 * 7 5 3 17 17 C 1.54268 * 110.02962 * 122.09840 * 16 7 5 18 18 C 1.54957 * 104.16078 * 95.75191 * 17 16 7 19 19 C 1.54891 * 102.77944 * 37.88887 * 18 17 16 20 20 C 1.53866 * 110.03151 * 239.31331 * 16 7 5 21 21 C 1.50693 * 120.00014 * 180.02562 * 2 1 3 22 22 C 1.53002 * 117.50149 * 8.62314 * 21 2 1 23 23 C 1.53002 * 117.49867 * 299.99829 * 21 2 1 24 24 H 1.09000 * 109.46956 * 93.53150 * 1 2 3 25 25 H 1.08996 * 109.47055 * 213.53392 * 1 2 3 26 26 H 1.09004 * 109.47081 * 333.53650 * 1 2 3 27 27 H 0.97001 * 120.00033 * 185.01013 * 11 10 8 28 28 H 1.08996 * 110.01373 * 0.70722 * 16 7 5 29 29 H 1.09004 * 110.48346 * 214.40354 * 17 16 7 30 30 H 1.09000 * 110.48415 * 337.04232 * 17 16 7 31 31 H 1.09002 * 110.72341 * 279.57231 * 18 17 16 32 32 H 1.09002 * 110.92155 * 156.29497 * 18 17 16 33 33 H 1.08999 * 110.48876 * 203.40768 * 19 18 17 34 34 H 1.08999 * 110.59835 * 80.81142 * 19 18 17 35 35 H 1.09001 * 110.03971 * 359.95261 * 20 16 7 36 36 H 1.08999 * 110.03449 * 121.38678 * 20 16 7 37 37 H 1.09003 * 115.55286 * 154.32818 * 21 2 1 38 38 H 1.09000 * 117.49330 * 359.97438 * 22 21 2 39 39 H 1.09001 * 117.50162 * 145.02035 * 22 21 2 40 40 H 1.09004 * 117.49819 * 214.97947 * 23 21 2 41 41 H 1.08994 * 117.49838 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1733 1.1541 0.0000 4 9 3.5153 1.1593 0.1552 5 6 1.4473 2.4228 -0.1692 6 8 0.3677 2.4357 -0.7300 7 7 1.9783 3.5703 0.2972 8 6 3.1307 3.5411 1.0340 9 1 3.9808 4.1343 0.7306 10 6 3.2075 2.7475 2.1734 11 7 2.1979 1.9758 2.5056 12 14 4.7466 2.7792 3.2316 13 1 4.9707 4.1570 3.7381 14 1 4.5775 1.8518 4.3791 15 1 5.9147 2.3543 2.4191 16 6 1.3215 4.8492 0.0150 17 6 0.9736 5.5671 1.3354 18 6 2.1600 6.5376 1.5632 19 6 2.4825 7.0270 0.1295 20 6 2.2807 5.7766 -0.7513 21 6 2.2604 -1.3050 -0.0006 22 6 1.4517 -2.5877 -0.2046 23 6 2.0260 -2.2566 1.1743 24 1 -0.3633 -0.0633 -1.0257 25 1 -0.3633 -0.8566 0.5677 26 1 -0.3633 0.9200 0.4580 27 1 2.2213 1.4779 3.3377 28 1 0.4166 4.6828 -0.5693 29 1 0.0410 6.1221 1.2335 30 1 0.9042 4.8496 2.1529 31 1 3.0122 6.0108 1.9924 32 1 1.8636 7.3721 2.1987 33 1 3.5137 7.3746 0.0680 34 1 1.7954 7.8187 -0.1691 35 1 3.2353 5.2757 -0.9126 36 1 1.8413 6.0605 -1.7075 37 1 3.2631 -1.2689 -0.4266 38 1 0.3745 -2.4875 -0.3380 39 1 1.9221 -3.3956 -0.7651 40 1 2.8744 -2.8468 1.5211 41 1 1.3265 -1.9389 1.9475 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900778244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:41 Heat of formation + Delta-G solvation = -42.379996 kcal Electronic energy + Delta-G solvation = -23803.495036 eV Core-core repulsion = 20405.955698 eV Total energy + Delta-G solvation = -3397.539338 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.40840 -38.99592 -37.50424 -36.54361 -33.95768 -32.00791 -31.20947 -27.95426 -27.45575 -26.23498 -24.68336 -23.28835 -21.95801 -20.32291 -19.87602 -19.24120 -17.83560 -16.89963 -16.13482 -15.56645 -15.27727 -14.62586 -14.48404 -14.34620 -13.98540 -13.56957 -13.43841 -13.06608 -12.76164 -12.47274 -12.16417 -11.59762 -11.50198 -11.29127 -11.17913 -11.01523 -10.90803 -10.82036 -10.72463 -10.53937 -10.48992 -10.37747 -10.29483 -10.22816 -9.96710 -9.86384 -9.77507 -8.91322 -8.34459 -7.56949 -7.15856 -6.33428 -4.16655 2.42707 3.20539 3.24319 3.25501 4.08865 4.30987 4.48127 4.73781 5.01556 5.21368 5.34735 5.35139 5.42874 5.47724 5.57864 5.73953 5.78719 5.93732 6.10338 6.12583 6.21611 6.26784 6.31080 6.32093 6.41797 6.44112 6.47713 6.53160 6.55550 6.58796 6.67324 6.71343 7.00365 7.03893 7.06405 7.16682 7.25918 7.48231 7.77311 7.96569 8.63941 8.97902 9.52527 9.93779 10.70642 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.007627 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.724320 B = 3670.062026 C = 4610.657177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.135 4.135 3 C 0.118 3.882 4 F -0.130 7.130 5 C 0.535 3.465 6 O -0.592 6.592 7 N -0.435 5.435 8 C -0.338 4.338 9 H 0.080 0.920 10 C 0.065 3.935 11 N -0.861 5.861 12 Si 0.911 3.089 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.271 1.271 16 C 0.133 3.867 17 C -0.117 4.117 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.128 4.128 21 C -0.099 4.099 22 C -0.180 4.180 23 C -0.171 4.171 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.080 0.920 27 H 0.273 0.727 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 -0.475 -1.802 1.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.138 4.138 3 C 0.095 3.905 4 F -0.109 7.109 5 C 0.325 3.675 6 O -0.479 6.479 7 N -0.153 5.153 8 C -0.466 4.466 9 H 0.098 0.902 10 C -0.143 4.143 11 N -0.496 5.496 12 Si 0.737 3.263 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.196 1.196 16 C 0.029 3.971 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.166 4.166 21 C -0.117 4.117 22 C -0.217 4.217 23 C -0.208 4.208 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.169 -0.596 -1.940 2.036 hybrid contribution 1.166 -0.052 0.962 1.513 sum 0.998 -0.648 -0.977 1.539 Atomic orbital electron populations 1.20519 0.90408 1.02069 1.00930 1.21127 0.96065 0.90845 1.05778 1.18946 0.77177 0.93581 1.00751 1.91398 1.30064 1.97114 1.92289 1.18262 0.85568 0.84538 0.79136 1.90615 1.22350 1.86660 1.48286 1.43204 1.23330 1.02834 1.45974 1.18977 0.91063 1.29866 1.06741 0.90210 1.25521 0.97403 0.94724 0.96671 1.69679 1.30837 1.25712 1.23392 0.86257 0.82468 0.78078 0.79473 1.19949 1.21006 1.19565 1.21596 0.95114 0.85210 0.95205 1.22483 0.96333 0.97938 0.98785 1.22466 0.99650 0.97637 0.95688 1.22271 1.00087 0.96989 0.96199 1.22451 1.00776 0.95832 0.97550 1.20812 0.99111 0.88759 1.03041 1.22970 1.00184 0.98520 1.00008 1.22879 1.03190 1.02904 0.91790 0.92423 0.93825 0.90084 0.91652 0.90237 0.93079 0.90495 0.90266 0.93331 0.92592 0.92773 0.90947 0.92855 0.87812 0.88557 0.89260 0.89311 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.70 7.84 36.00 0.28 -1.41 16 2 C -0.13 -2.92 5.80 -101.09 -0.59 -3.51 16 3 C 0.12 2.88 4.82 -37.70 -0.18 2.70 16 4 F -0.13 -3.25 13.45 2.25 0.03 -3.22 16 5 C 0.53 13.76 6.27 -12.65 -0.08 13.68 16 6 O -0.59 -15.71 13.46 5.22 0.07 -15.64 16 7 N -0.43 -10.65 2.35 -107.86 -0.25 -10.90 16 8 C -0.34 -8.34 5.42 -15.02 -0.08 -8.42 16 9 H 0.08 1.96 7.16 -52.48 -0.38 1.58 16 10 C 0.06 1.60 3.70 -17.45 -0.06 1.54 16 11 N -0.86 -22.35 10.94 55.50 0.61 -21.74 16 12 Si 0.91 19.97 29.56 -169.99 -5.02 14.94 16 13 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 16 C 0.13 2.85 3.35 -66.81 -0.22 2.62 16 17 C -0.12 -2.31 6.10 -25.03 -0.15 -2.47 16 18 C -0.12 -2.05 6.56 -24.70 -0.16 -2.21 16 19 C -0.12 -1.88 6.83 -25.07 -0.17 -2.05 16 20 C -0.13 -2.34 6.26 -25.61 -0.16 -2.50 16 21 C -0.10 -1.82 5.70 -91.77 -0.52 -2.34 16 22 C -0.18 -2.66 9.78 -26.73 -0.26 -2.92 16 23 C -0.17 -2.74 10.07 -26.73 -0.27 -3.01 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.04 0.78 6.80 -51.93 -0.35 0.43 16 26 H 0.08 1.91 6.09 -51.93 -0.32 1.60 16 27 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.08 1.78 6.95 -51.93 -0.36 1.42 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.76 7.97 -51.93 -0.41 1.34 16 31 H 0.08 1.55 7.26 -51.93 -0.38 1.17 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.43 6.92 -51.93 -0.36 1.07 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.89 7.88 -51.93 -0.41 1.48 16 38 H 0.10 1.39 6.63 -51.93 -0.34 1.04 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 324.85 15.07 4.90 4.90 Total: -1.00 -27.17 324.85 -8.56 -35.73 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.25 Total: 6.24 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.63 Total: -10.30 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.35 Total: -32.64 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.07 Total: -15.64 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.03 Total: -3.22 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.17 -8.56 -35.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900778244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.655 kcal (2) G-P(sol) polarization free energy of solvation -27.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds