Wall clock time and date at job start Tue Mar 31 2020 05:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33115 * 119.99856 * 2 1 4 4 F 1.35105 * 119.99962 * 5.14882 * 3 2 1 5 5 C 1.47291 * 119.99921 * 185.14445 * 3 2 1 6 6 O 1.21611 * 120.00208 * 268.11765 * 5 3 2 7 7 N 1.34774 * 119.99709 * 88.11843 * 5 3 2 8 8 C 1.46931 * 120.63244 * 175.00871 * 7 5 3 9 9 C 1.53194 * 108.89416 * 233.67818 * 8 7 5 10 10 C 1.53039 * 109.30949 * 305.29006 * 9 8 7 11 11 C 1.50701 * 109.45733 * 181.37461 * 10 9 8 12 12 H 1.07999 * 120.00108 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99794 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99916 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00166 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.46919 * 89.99631 * 15 13 11 17 17 H 1.48496 * 109.47260 * 209.99718 * 15 13 11 18 18 H 1.48496 * 109.47171 * 329.99957 * 15 13 11 19 19 C 1.53033 * 109.53903 * 61.36728 * 10 9 8 20 20 C 1.47203 * 120.81539 * 355.14639 * 7 5 3 21 21 C 1.50695 * 119.99837 * 179.97438 * 2 1 3 22 22 C 1.52996 * 117.50021 * 4.19541 * 21 2 1 23 23 C 1.52998 * 117.50133 * 295.53333 * 21 2 1 24 24 H 1.08999 * 109.46786 * 90.00316 * 1 2 3 25 25 H 1.09000 * 109.47108 * 209.99900 * 1 2 3 26 26 H 1.09002 * 109.47525 * 330.00140 * 1 2 3 27 27 H 1.08996 * 109.58776 * 113.81167 * 8 7 5 28 28 H 1.09006 * 109.58326 * 353.53088 * 8 7 5 29 29 H 1.08998 * 109.49738 * 65.24291 * 9 8 7 30 30 H 1.09001 * 109.49454 * 185.30668 * 9 8 7 31 31 H 1.09007 * 109.45783 * 301.34696 * 10 9 8 32 32 H 0.97000 * 119.99812 * 180.02562 * 14 13 11 33 33 H 1.09001 * 109.49875 * 58.58658 * 19 10 9 34 34 H 1.09001 * 109.50064 * 178.68610 * 19 10 9 35 35 H 1.08994 * 109.53346 * 6.53976 * 20 7 5 36 36 H 1.09000 * 109.67908 * 246.22725 * 20 7 5 37 37 H 1.09005 * 115.54748 * 149.86043 * 21 2 1 38 38 H 1.08999 * 117.50339 * 359.97438 * 22 21 2 39 39 H 1.08998 * 117.50401 * 145.01911 * 22 21 2 40 40 H 1.09003 * 117.49595 * 214.97910 * 23 21 2 41 41 H 1.08994 * 117.50466 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1726 1.1528 0.0000 4 9 1.5011 2.3205 0.1050 5 6 3.6410 1.1554 -0.1144 6 8 4.3291 1.1438 0.8883 7 7 4.2222 1.1706 -1.3303 8 6 5.6813 1.2834 -1.4614 9 6 6.0066 2.4574 -2.3902 10 6 5.2718 2.2698 -3.7194 11 6 5.6161 3.4057 -4.6480 12 1 6.2910 4.1835 -4.3227 13 6 5.0696 3.4518 -5.9130 14 7 5.3697 4.4433 -6.7232 15 14 3.9017 2.1067 -6.4755 16 1 2.5079 2.4847 -6.1292 17 1 4.0170 1.9341 -7.9459 18 1 4.2517 0.8323 -5.7985 19 6 3.7617 2.2541 -3.4716 20 6 3.4108 1.0778 -2.5550 21 6 2.2605 -1.3051 0.0006 22 6 1.4415 -2.5936 -0.0981 23 6 2.1071 -2.2088 1.2255 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 6.0826 0.3618 -1.8829 28 1 6.1236 1.4598 -0.4808 29 1 5.6851 3.3892 -1.9250 30 1 7.0812 2.4923 -2.5697 31 1 5.5754 1.3258 -4.1721 32 1 4.9849 4.4759 -7.6131 33 1 3.4613 3.1879 -2.9963 34 1 3.2383 2.1439 -4.4214 35 1 2.3531 1.1197 -2.2955 36 1 3.6247 0.1395 -3.0668 37 1 3.2321 -1.2872 -0.4932 38 1 0.3577 -2.4975 -0.1631 39 1 1.8744 -3.4237 -0.6564 40 1 2.9777 -2.7858 1.5374 41 1 1.4616 -1.8594 2.0313 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907290165.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:57 Heat of formation + Delta-G solvation = -41.608727 kcal Electronic energy + Delta-G solvation = -22981.338931 eV Core-core repulsion = 19583.833037 eV Total energy + Delta-G solvation = -3397.505893 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.91993 -40.06465 -38.17194 -37.12435 -33.74302 -33.15109 -31.56030 -30.72734 -28.40967 -26.40440 -23.88545 -22.84677 -22.68913 -22.54952 -20.90148 -19.31721 -18.37322 -17.58440 -16.90100 -16.70880 -16.41375 -15.32043 -14.87728 -14.79006 -14.61508 -14.30678 -14.09395 -13.53109 -13.33984 -13.24820 -12.79472 -12.67599 -12.60523 -12.41671 -12.12983 -12.00551 -11.84136 -11.60304 -11.08885 -11.04787 -10.81235 -10.69077 -10.24665 -10.22980 -9.84668 -9.77010 -9.40650 -9.15818 -8.72493 -8.60157 -8.35592 -6.13148 -4.12793 1.32679 2.41556 3.03123 3.18568 3.27942 3.32733 3.61314 4.08598 4.24693 4.33248 4.55703 4.66809 4.81685 5.01180 5.11011 5.14640 5.27200 5.30681 5.40987 5.49887 5.56149 5.57979 5.64986 5.71251 5.78949 5.83475 5.85108 5.88925 5.95034 6.09336 6.21331 6.33269 6.51050 6.58273 6.67572 6.79625 7.10634 7.41044 7.47007 7.68550 8.07804 8.45914 8.91239 9.48476 11.00251 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021426 B = 0.005253 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.525609 B = 5328.759913 C = 5684.110412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.098 4.098 3 C 0.023 3.977 4 F -0.124 7.124 5 C 0.550 3.450 6 O -0.528 6.528 7 N -0.587 5.587 8 C 0.108 3.892 9 C -0.114 4.114 10 C 0.015 3.985 11 C -0.514 4.514 12 H 0.074 0.926 13 C 0.069 3.931 14 N -0.900 5.900 15 Si 0.884 3.116 16 H -0.278 1.278 17 H -0.296 1.296 18 H -0.265 1.265 19 C -0.136 4.136 20 C 0.102 3.898 21 C -0.121 4.121 22 C -0.170 4.170 23 C -0.160 4.160 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.264 0.736 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.325 -13.430 11.971 20.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.100 4.100 3 C 0.001 3.999 4 F -0.102 7.102 5 C 0.335 3.665 6 O -0.406 6.406 7 N -0.319 5.319 8 C -0.013 4.013 9 C -0.152 4.152 10 C -0.004 4.004 11 C -0.552 4.552 12 H 0.092 0.908 13 C -0.133 4.133 14 N -0.538 5.538 15 Si 0.715 3.285 16 H -0.205 1.205 17 H -0.224 1.224 18 H -0.190 1.190 19 C -0.174 4.174 20 C -0.021 4.021 21 C -0.140 4.140 22 C -0.206 4.206 23 C -0.197 4.197 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.980 -13.300 12.312 20.227 hybrid contribution -0.876 -0.244 -0.616 1.098 sum -9.856 -13.545 11.696 20.430 Atomic orbital electron populations 1.20809 0.90085 1.03394 1.03194 1.21564 0.96399 0.91893 1.00152 1.19136 0.90216 0.81974 1.08568 1.91514 1.79125 1.46178 1.93417 1.18238 0.86845 0.77559 0.83880 1.90804 1.63876 1.49905 1.35982 1.48229 1.08567 1.69959 1.05160 1.21880 0.78125 0.99900 1.01431 1.21845 1.00988 0.96325 0.96019 1.19141 0.89862 0.98256 0.93167 1.21031 1.28577 1.08306 0.97259 0.90762 1.25041 0.96273 0.95383 0.96554 1.69898 1.44477 1.31247 1.08132 0.86892 0.81342 0.83297 0.77018 1.20500 1.22371 1.18965 1.22399 1.01057 0.96504 0.97408 1.22027 0.94320 1.00600 0.85120 1.20856 1.00233 0.88343 1.04519 1.23069 0.99624 0.97296 1.00660 1.22975 1.03356 1.01901 0.91495 0.90084 0.90833 0.90850 0.91511 0.89641 0.92136 0.90948 0.95263 0.92611 0.91437 0.92176 0.90923 0.91198 0.86859 0.88068 0.88235 0.88169 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.26 36.01 0.33 -0.77 16 2 C -0.10 -1.19 5.59 -101.13 -0.57 -1.75 16 3 C 0.02 0.35 5.20 -37.69 -0.20 0.16 16 4 F -0.12 -1.96 16.31 2.25 0.04 -1.92 16 5 C 0.55 9.46 5.77 -12.58 -0.07 9.39 16 6 O -0.53 -10.38 16.54 5.27 0.09 -10.30 16 7 N -0.59 -9.86 2.98 -173.86 -0.52 -10.38 16 8 C 0.11 1.79 6.41 -3.71 -0.02 1.77 16 9 C -0.11 -2.17 5.30 -26.61 -0.14 -2.31 16 10 C 0.01 0.32 1.66 -91.73 -0.15 0.17 16 11 C -0.51 -13.89 9.14 -34.44 -0.31 -14.21 16 12 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 13 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 14 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 15 Si 0.88 20.86 24.38 -169.99 -4.14 16.72 16 16 H -0.28 -6.35 6.86 56.52 0.39 -5.97 16 17 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.26 -5.82 6.53 56.52 0.37 -5.45 16 19 C -0.14 -2.74 4.85 -26.61 -0.13 -2.87 16 20 C 0.10 1.67 6.36 -3.56 -0.02 1.65 16 21 C -0.12 -1.35 5.42 -91.78 -0.50 -1.84 16 22 C -0.17 -1.40 9.77 -26.70 -0.26 -1.66 16 23 C -0.16 -1.48 10.22 -26.69 -0.27 -1.75 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.54 6.48 -51.93 -0.34 0.21 16 26 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.09 1.41 7.03 -51.93 -0.37 1.04 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.03 0.65 7.20 -51.92 -0.37 0.28 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 33 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.06 1.28 3.24 -51.93 -0.17 1.11 16 35 H 0.07 1.08 6.19 -51.93 -0.32 0.76 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.11 1.41 7.27 -51.93 -0.38 1.03 16 38 H 0.10 0.71 6.39 -51.93 -0.33 0.38 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 325.93 15.07 4.91 4.91 Total: -1.00 -30.80 325.93 -7.34 -38.14 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.07 Total: 1.24 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -2.41 Total: -12.21 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.25 Total: -36.58 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.14 Total: 16.72 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.80 -7.34 -38.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907290165.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.471 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds