Wall clock time and date at job start Tue Mar 31 2020 05:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33115 * 119.99856 * 2 1 4 4 F 1.35105 * 119.99962 * 5.14882 * 3 2 1 5 5 C 1.47291 * 119.99921 * 185.14445 * 3 2 1 6 6 O 1.21611 * 120.00208 * 268.11765 * 5 3 2 7 7 N 1.34774 * 119.99709 * 88.11843 * 5 3 2 8 8 C 1.46931 * 120.63244 * 175.00871 * 7 5 3 9 9 C 1.53194 * 108.89416 * 233.67818 * 8 7 5 10 10 C 1.53039 * 109.30949 * 305.29006 * 9 8 7 11 11 C 1.50701 * 109.45733 * 181.37461 * 10 9 8 12 12 H 1.07999 * 120.00108 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99794 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99916 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00166 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.46919 * 89.99631 * 15 13 11 17 17 H 1.48496 * 109.47260 * 209.99718 * 15 13 11 18 18 H 1.48496 * 109.47171 * 329.99957 * 15 13 11 19 19 C 1.53033 * 109.53903 * 61.36728 * 10 9 8 20 20 C 1.47203 * 120.81539 * 355.14639 * 7 5 3 21 21 C 1.50695 * 119.99837 * 179.97438 * 2 1 3 22 22 C 1.52996 * 117.50021 * 4.19541 * 21 2 1 23 23 C 1.52998 * 117.50133 * 295.53333 * 21 2 1 24 24 H 1.08999 * 109.46786 * 90.00316 * 1 2 3 25 25 H 1.09000 * 109.47108 * 209.99900 * 1 2 3 26 26 H 1.09002 * 109.47525 * 330.00140 * 1 2 3 27 27 H 1.08996 * 109.58776 * 113.81167 * 8 7 5 28 28 H 1.09006 * 109.58326 * 353.53088 * 8 7 5 29 29 H 1.08998 * 109.49738 * 65.24291 * 9 8 7 30 30 H 1.09001 * 109.49454 * 185.30668 * 9 8 7 31 31 H 1.09007 * 109.45783 * 301.34696 * 10 9 8 32 32 H 0.97000 * 119.99812 * 180.02562 * 14 13 11 33 33 H 1.09001 * 109.49875 * 58.58658 * 19 10 9 34 34 H 1.09001 * 109.50064 * 178.68610 * 19 10 9 35 35 H 1.08994 * 109.53346 * 6.53976 * 20 7 5 36 36 H 1.09000 * 109.67908 * 246.22725 * 20 7 5 37 37 H 1.09005 * 115.54748 * 149.86043 * 21 2 1 38 38 H 1.08999 * 117.50339 * 359.97438 * 22 21 2 39 39 H 1.08998 * 117.50401 * 145.01911 * 22 21 2 40 40 H 1.09003 * 117.49595 * 214.97910 * 23 21 2 41 41 H 1.08994 * 117.50466 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1726 1.1528 0.0000 4 9 1.5011 2.3205 0.1050 5 6 3.6410 1.1554 -0.1144 6 8 4.3291 1.1438 0.8883 7 7 4.2222 1.1706 -1.3303 8 6 5.6813 1.2834 -1.4614 9 6 6.0066 2.4574 -2.3902 10 6 5.2718 2.2698 -3.7194 11 6 5.6161 3.4057 -4.6480 12 1 6.2910 4.1835 -4.3227 13 6 5.0696 3.4518 -5.9130 14 7 5.3697 4.4433 -6.7232 15 14 3.9017 2.1067 -6.4755 16 1 2.5079 2.4847 -6.1292 17 1 4.0170 1.9341 -7.9459 18 1 4.2517 0.8323 -5.7985 19 6 3.7617 2.2541 -3.4716 20 6 3.4108 1.0778 -2.5550 21 6 2.2605 -1.3051 0.0006 22 6 1.4415 -2.5936 -0.0981 23 6 2.1071 -2.2088 1.2255 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 6.0826 0.3618 -1.8829 28 1 6.1236 1.4598 -0.4808 29 1 5.6851 3.3892 -1.9250 30 1 7.0812 2.4923 -2.5697 31 1 5.5754 1.3258 -4.1721 32 1 4.9849 4.4759 -7.6131 33 1 3.4613 3.1879 -2.9963 34 1 3.2383 2.1439 -4.4214 35 1 2.3531 1.1197 -2.2955 36 1 3.6247 0.1395 -3.0668 37 1 3.2321 -1.2872 -0.4932 38 1 0.3577 -2.4975 -0.1631 39 1 1.8744 -3.4237 -0.6564 40 1 2.9777 -2.7858 1.5374 41 1 1.4616 -1.8594 2.0313 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907290165.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:57 Heat of formation + Delta-G solvation = -59.929229 kcal Electronic energy + Delta-G solvation = -22982.133367 eV Core-core repulsion = 19583.833037 eV Total energy + Delta-G solvation = -3398.300330 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.00239 -41.37475 -39.09371 -38.54256 -35.41895 -34.22017 -33.34270 -32.17569 -29.49077 -28.02335 -25.13636 -24.28639 -23.98869 -23.22886 -22.24234 -20.73445 -19.52382 -18.93123 -18.63412 -17.81740 -17.69965 -16.74093 -16.30311 -16.00641 -15.78223 -15.39622 -15.27700 -15.02257 -14.91530 -14.42224 -14.20431 -14.07648 -13.80363 -13.72931 -13.53466 -13.20514 -12.84566 -12.59134 -12.35053 -12.25380 -12.14113 -11.87249 -11.81389 -11.53282 -11.43537 -11.26552 -11.06598 -11.00605 -10.67447 -9.78359 -9.68810 -8.28618 -6.34053 0.34008 1.12184 1.31782 1.38313 1.49120 1.80290 2.34279 2.88084 2.99725 3.06583 3.33761 3.78833 3.87058 3.89532 4.02245 4.11419 4.12016 4.17348 4.24699 4.33061 4.37203 4.48778 4.65166 4.66827 4.73591 4.78898 4.88931 4.91217 4.92813 4.96273 5.04184 5.08190 5.14569 5.25185 5.29462 5.43624 5.47113 5.65346 5.69921 6.14524 6.30521 6.73090 6.77859 7.31564 8.88573 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021426 B = 0.005253 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.525609 B = 5328.759913 C = 5684.110412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.056 4.056 3 C -0.029 4.029 4 F -0.136 7.136 5 C 0.553 3.447 6 O -0.562 6.562 7 N -0.589 5.589 8 C 0.115 3.885 9 C -0.108 4.108 10 C 0.015 3.985 11 C -0.522 4.522 12 H 0.027 0.973 13 C 0.007 3.993 14 N -0.954 5.954 15 Si 0.948 3.052 16 H -0.263 1.263 17 H -0.301 1.301 18 H -0.230 1.230 19 C -0.133 4.133 20 C 0.110 3.890 21 C -0.155 4.155 22 C -0.143 4.143 23 C -0.160 4.160 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.265 0.735 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.821 -17.311 12.556 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.058 4.058 3 C -0.051 4.051 4 F -0.115 7.115 5 C 0.339 3.661 6 O -0.441 6.441 7 N -0.320 5.320 8 C -0.006 4.006 9 C -0.146 4.146 10 C -0.004 4.004 11 C -0.560 4.560 12 H 0.045 0.955 13 C -0.190 4.190 14 N -0.594 5.594 15 Si 0.774 3.226 16 H -0.189 1.189 17 H -0.229 1.229 18 H -0.153 1.153 19 C -0.171 4.171 20 C -0.012 4.012 21 C -0.173 4.173 22 C -0.180 4.180 23 C -0.197 4.197 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.138 0.862 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.477 -17.193 12.921 24.378 hybrid contribution -0.030 1.002 -0.748 1.251 sum -11.507 -16.191 12.173 23.297 Atomic orbital electron populations 1.20985 0.87774 1.04554 1.04568 1.22023 0.97916 0.91236 0.94661 1.18980 0.89144 0.82730 1.14214 1.91477 1.78965 1.46887 1.94127 1.18578 0.87870 0.76359 0.83274 1.90768 1.65082 1.51302 1.36953 1.48279 1.08527 1.69762 1.05460 1.21787 0.78606 0.99515 1.00718 1.21728 1.00785 0.96808 0.95287 1.19102 0.91774 0.96280 0.93230 1.21366 1.27412 1.08714 0.98526 0.95501 1.26006 0.98317 0.98092 0.96549 1.70075 1.46573 1.34025 1.08751 0.85846 0.79280 0.81220 0.76232 1.18926 1.22941 1.15332 1.22242 0.99103 0.97692 0.98088 1.21997 0.95457 0.99570 0.84145 1.20948 1.00518 0.89048 1.06809 1.23211 1.00343 0.95270 0.99132 1.23081 1.03910 1.00957 0.91739 0.88328 0.88228 0.91198 0.88979 0.89681 0.94267 0.90804 0.94211 0.92619 0.93324 0.92530 0.88939 0.88705 0.88316 0.86193 0.86970 0.87836 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.26 71.24 0.66 -1.13 16 2 C -0.06 -1.20 5.59 -17.60 -0.10 -1.29 16 3 C -0.03 -0.83 5.20 23.50 0.12 -0.71 16 4 F -0.14 -4.22 16.31 44.97 0.73 -3.49 16 5 C 0.55 18.54 5.77 86.62 0.50 19.04 16 6 O -0.56 -22.02 16.54 -4.06 -0.07 -22.09 16 7 N -0.59 -18.85 2.98 -822.21 -2.45 -21.30 16 8 C 0.12 3.68 6.41 86.36 0.55 4.23 16 9 C -0.11 -4.15 5.30 30.67 0.16 -3.99 16 10 C 0.02 0.65 1.66 -11.52 -0.02 0.63 16 11 C -0.52 -29.20 9.14 25.60 0.23 -28.97 16 12 H 0.03 1.69 7.99 -2.91 -0.02 1.67 16 13 C 0.01 0.39 5.45 84.65 0.46 0.85 16 14 N -0.95 -59.38 13.96 21.45 0.30 -59.08 16 15 Si 0.95 42.16 24.38 68.60 1.67 43.83 16 16 H -0.26 -11.04 6.86 99.48 0.68 -10.35 16 17 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 18 H -0.23 -8.90 6.53 99.48 0.65 -8.25 16 19 C -0.13 -5.18 4.85 30.67 0.15 -5.03 16 20 C 0.11 3.30 6.36 86.31 0.55 3.85 16 21 C -0.15 -2.92 5.42 -11.54 -0.06 -2.98 16 22 C -0.14 -1.67 9.77 30.62 0.30 -1.37 16 23 C -0.16 -2.38 10.22 30.62 0.31 -2.07 16 24 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.10 0.96 6.48 -2.39 -0.02 0.94 16 26 H 0.07 1.12 7.48 -2.39 -0.02 1.10 16 27 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.08 2.76 7.03 -2.38 -0.02 2.74 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.04 1.67 7.20 -2.38 -0.02 1.65 16 32 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 2.25 3.24 -2.39 -0.01 2.24 16 35 H 0.09 2.45 6.19 -2.39 -0.01 2.44 16 36 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.10 2.19 7.27 -2.38 -0.02 2.17 16 38 H 0.12 0.98 6.39 -2.39 -0.02 0.96 16 39 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -70.56 325.93 4.95 -65.60 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.95 Total: 15.46 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 3.82 Total: -18.93 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -2.15 Total: -80.39 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.07 Total: -22.09 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.73 Total: -3.49 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.67 Total: 43.83 kcal Total: -70.56 4.95 -65.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907290165.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.675 kcal (2) G-P(sol) polarization free energy of solvation -70.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds