Wall clock time and date at job start Tue Mar 31 2020 05:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33117 * 119.99760 * 2 1 4 4 F 1.35107 * 119.99803 * 184.96804 * 3 2 1 5 5 C 1.47293 * 120.00169 * 4.96599 * 3 2 1 6 6 O 1.21607 * 119.99799 * 94.87732 * 5 3 2 7 7 N 1.34779 * 120.00124 * 274.87929 * 5 3 2 8 8 C 1.46925 * 120.62906 * 354.82296 * 7 5 3 9 9 C 1.53186 * 108.89270 * 233.51530 * 8 7 5 10 10 C 1.53077 * 109.29571 * 305.58063 * 9 8 7 11 11 C 1.50709 * 109.43898 * 181.23699 * 10 9 8 12 12 H 1.07993 * 119.99638 * 239.79698 * 11 10 9 13 13 C 1.37876 * 119.99801 * 59.79726 * 11 10 9 14 14 N 1.31516 * 120.00440 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99742 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47250 * 59.99921 * 15 13 11 17 17 H 1.48499 * 109.47559 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47481 * 300.00007 * 15 13 11 19 19 C 1.53038 * 109.65715 * 61.15610 * 10 9 8 20 20 C 1.46927 * 120.62922 * 174.80739 * 7 5 3 21 21 C 1.50701 * 120.00169 * 179.97438 * 2 1 3 22 22 C 1.52995 * 117.49827 * 8.74507 * 21 2 1 23 23 C 1.53003 * 117.49804 * 300.08617 * 21 2 1 24 24 H 1.09000 * 109.47011 * 85.06475 * 1 2 3 25 25 H 1.09002 * 109.46899 * 205.05991 * 1 2 3 26 26 H 1.08996 * 109.47215 * 325.06333 * 1 2 3 27 27 H 1.08999 * 109.58938 * 353.37849 * 8 7 5 28 28 H 1.09002 * 109.58355 * 113.65770 * 8 7 5 29 29 H 1.09001 * 109.49903 * 65.39545 * 9 8 7 30 30 H 1.09009 * 109.49707 * 185.48760 * 9 8 7 31 31 H 1.09001 * 109.34700 * 301.12608 * 10 9 8 32 32 H 0.96997 * 120.00511 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.49730 * 178.74785 * 19 10 9 34 34 H 1.09001 * 109.52309 * 58.66617 * 19 10 9 35 35 H 1.08998 * 109.57964 * 246.19872 * 20 7 5 36 36 H 1.09003 * 109.58802 * 6.47525 * 20 7 5 37 37 H 1.09000 * 115.54842 * 154.42077 * 21 2 1 38 38 H 1.09000 * 117.50137 * 0.02562 * 22 21 2 39 39 H 1.09004 * 117.49907 * 145.02370 * 22 21 2 40 40 H 1.09000 * 117.49824 * 214.97834 * 23 21 2 41 41 H 1.08998 * 117.49749 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1529 0.0000 4 9 3.5198 1.1551 -0.1013 5 6 1.4402 2.4260 0.1104 6 8 1.2939 2.9510 1.1975 7 7 0.9321 3.0092 -0.9934 8 6 1.1963 2.4482 -2.3254 9 6 1.7708 3.5492 -3.2222 10 6 0.8218 4.7503 -3.2197 11 6 1.3689 5.8237 -4.1251 12 1 1.6004 6.8002 -3.7262 13 6 1.5739 5.5589 -5.4626 14 7 1.2924 4.3695 -5.9482 15 14 2.2513 6.8895 -6.5849 16 1 3.5862 7.3178 -6.0953 17 1 2.3774 6.3562 -7.9651 18 1 1.3282 8.0529 -6.5868 19 6 0.6916 5.3004 -1.7975 20 6 0.1033 4.2177 -0.8874 21 6 2.2605 -1.3051 0.0006 22 6 1.4521 -2.5876 -0.2052 23 6 2.0246 -2.2565 1.1753 24 1 -0.3633 0.0884 -1.0239 25 1 -0.3633 -0.9310 0.4353 26 1 -0.3633 0.8424 0.5885 27 1 1.9145 1.6325 -2.2425 28 1 0.2669 2.0745 -2.7553 29 1 2.7450 3.8567 -2.8420 30 1 1.8795 3.1706 -4.2387 31 1 -0.1583 4.4369 -3.5791 32 1 1.4362 4.1834 -6.8892 33 1 0.0330 6.1689 -1.8023 34 1 1.6749 5.5915 -1.4281 35 1 -0.9156 3.9906 -1.2012 36 1 0.0982 4.5680 0.1448 37 1 3.2638 -1.2688 -0.4240 38 1 0.3753 -2.4875 -0.3414 39 1 1.9237 -3.3954 -0.7649 40 1 2.8724 -2.8466 1.5232 41 1 1.3240 -1.9387 1.9475 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907290166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:59 Heat of formation + Delta-G solvation = -51.341811 kcal Electronic energy + Delta-G solvation = -22720.547331 eV Core-core repulsion = 19322.619379 eV Total energy + Delta-G solvation = -3397.927952 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.76779 -39.86279 -38.09338 -36.88640 -33.80058 -33.18710 -31.18885 -30.17060 -27.60578 -26.31954 -24.54296 -22.76167 -22.56503 -22.29932 -20.39825 -19.07573 -18.34146 -17.31637 -17.04862 -16.30918 -16.17534 -15.11700 -14.74547 -14.62891 -14.55353 -14.20827 -13.73251 -13.32278 -13.16797 -12.93997 -12.77316 -12.63276 -12.33102 -12.26623 -11.79092 -11.70516 -11.57591 -11.32332 -10.99621 -10.94596 -10.70436 -10.65614 -10.44642 -10.14429 -9.78689 -9.57735 -9.23705 -9.02999 -8.60176 -8.41504 -8.15599 -6.06100 -4.12266 1.45907 2.56015 3.18612 3.28684 3.33435 3.36613 3.69338 4.25359 4.38934 4.45368 4.64337 4.71415 4.84670 4.88297 5.23410 5.38284 5.47396 5.49787 5.52471 5.60967 5.69376 5.73928 5.84949 5.88460 5.89899 5.99559 6.05226 6.15197 6.25105 6.35754 6.39977 6.57706 6.78729 6.96008 7.07387 7.21131 7.59911 7.71103 7.86864 7.98955 8.24001 8.36292 8.90718 9.53100 10.99534 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025342 B = 0.004347 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.602687 B = 6439.943337 C = 6907.444522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.098 4.098 3 C 0.027 3.973 4 F -0.127 7.127 5 C 0.546 3.454 6 O -0.537 6.537 7 N -0.582 5.582 8 C 0.103 3.897 9 C -0.124 4.124 10 C 0.049 3.951 11 C -0.513 4.513 12 H 0.055 0.945 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.124 4.124 20 C 0.110 3.890 21 C -0.121 4.121 22 C -0.171 4.171 23 C -0.166 4.166 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.107 0.893 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.716 -12.503 9.282 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.100 4.100 3 C 0.004 3.996 4 F -0.106 7.106 5 C 0.331 3.669 6 O -0.415 6.415 7 N -0.314 5.314 8 C -0.018 4.018 9 C -0.162 4.162 10 C 0.030 3.970 11 C -0.552 4.552 12 H 0.073 0.927 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.162 4.162 20 C -0.012 4.012 21 C -0.140 4.140 22 C -0.207 4.207 23 C -0.203 4.203 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.125 0.875 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.134 0.866 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.756 -12.296 9.650 15.729 hybrid contribution 0.822 0.684 -0.826 1.351 sum -0.933 -11.613 8.824 14.615 Atomic orbital electron populations 1.20791 0.89835 1.03276 1.03348 1.21544 0.96413 0.91671 1.00399 1.19225 0.77733 0.94317 1.08284 1.91498 1.28541 1.97106 1.93412 1.18294 0.80015 0.83779 0.84821 1.90794 1.60198 1.63449 1.27088 1.48319 1.49352 1.27211 1.06512 1.22099 1.00561 0.97684 0.81498 1.22050 0.98527 0.95498 1.00138 1.18648 0.95625 0.93163 0.89537 1.21157 1.42971 0.97818 0.93207 0.92694 1.24948 0.95374 0.95475 0.98073 1.69813 1.48715 1.20501 1.14062 0.86665 0.79602 0.82094 0.79692 1.20314 1.21287 1.20294 1.22013 1.00140 0.96368 0.97650 1.21817 0.93260 0.84758 1.01344 1.20947 1.00134 0.88143 1.04734 1.23057 1.00308 0.97789 0.99575 1.22994 1.03647 1.01981 0.91704 0.89954 0.90708 0.91051 0.91592 0.91502 0.94117 0.87473 0.95345 0.92877 0.91820 0.92790 0.91644 0.90091 0.86565 0.88070 0.88293 0.88286 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 8.97 36.00 0.32 -0.98 16 2 C -0.10 -1.28 5.81 -101.13 -0.59 -1.87 16 3 C 0.03 0.43 5.09 -37.68 -0.19 0.24 16 4 F -0.13 -2.15 16.45 2.25 0.04 -2.12 16 5 C 0.55 9.98 5.65 -12.58 -0.07 9.91 16 6 O -0.54 -11.16 16.52 5.27 0.09 -11.08 16 7 N -0.58 -10.44 2.97 -174.09 -0.52 -10.96 16 8 C 0.10 1.85 6.31 -3.71 -0.02 1.83 16 9 C -0.12 -2.73 5.16 -26.60 -0.14 -2.86 16 10 C 0.05 1.14 2.06 -91.71 -0.19 0.95 16 11 C -0.51 -13.54 8.56 -34.44 -0.29 -13.83 16 12 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 13 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 14 N -0.89 -24.15 11.30 55.43 0.63 -23.52 16 15 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.12 -2.49 5.30 -26.62 -0.14 -2.63 16 20 C 0.11 1.94 6.44 -3.71 -0.02 1.92 16 21 C -0.12 -1.33 5.76 -91.77 -0.53 -1.86 16 22 C -0.17 -1.44 9.77 -26.70 -0.26 -1.70 16 23 C -0.17 -1.48 10.10 -26.69 -0.27 -1.75 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.67 6.33 -51.93 -0.33 0.34 16 26 H 0.07 0.90 7.04 -51.93 -0.37 0.54 16 27 H 0.07 1.10 6.38 -51.93 -0.33 0.77 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.11 2.62 6.03 -51.92 -0.31 2.30 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.42 6.99 -51.93 -0.36 1.06 16 37 H 0.12 1.31 7.73 -51.93 -0.40 0.91 16 38 H 0.10 0.79 6.44 -51.93 -0.33 0.45 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 332.82 15.07 5.02 5.02 Total: -1.00 -28.77 332.82 -8.47 -37.24 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.21 Total: 0.79 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -2.49 Total: -11.09 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.11 Total: -34.48 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.77 -8.47 -37.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907290166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.098 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds