Wall clock time and date at job start Tue Mar 31 2020 05:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33117 * 119.99760 * 2 1 4 4 F 1.35107 * 119.99803 * 184.96804 * 3 2 1 5 5 C 1.47293 * 120.00169 * 4.96599 * 3 2 1 6 6 O 1.21607 * 119.99799 * 94.87732 * 5 3 2 7 7 N 1.34779 * 120.00124 * 274.87929 * 5 3 2 8 8 C 1.46925 * 120.62906 * 354.82296 * 7 5 3 9 9 C 1.53186 * 108.89270 * 233.51530 * 8 7 5 10 10 C 1.53077 * 109.29571 * 305.58063 * 9 8 7 11 11 C 1.50709 * 109.43898 * 181.23699 * 10 9 8 12 12 H 1.07993 * 119.99638 * 239.79698 * 11 10 9 13 13 C 1.37876 * 119.99801 * 59.79726 * 11 10 9 14 14 N 1.31516 * 120.00440 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99742 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47250 * 59.99921 * 15 13 11 17 17 H 1.48499 * 109.47559 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47481 * 300.00007 * 15 13 11 19 19 C 1.53038 * 109.65715 * 61.15610 * 10 9 8 20 20 C 1.46927 * 120.62922 * 174.80739 * 7 5 3 21 21 C 1.50701 * 120.00169 * 179.97438 * 2 1 3 22 22 C 1.52995 * 117.49827 * 8.74507 * 21 2 1 23 23 C 1.53003 * 117.49804 * 300.08617 * 21 2 1 24 24 H 1.09000 * 109.47011 * 85.06475 * 1 2 3 25 25 H 1.09002 * 109.46899 * 205.05991 * 1 2 3 26 26 H 1.08996 * 109.47215 * 325.06333 * 1 2 3 27 27 H 1.08999 * 109.58938 * 353.37849 * 8 7 5 28 28 H 1.09002 * 109.58355 * 113.65770 * 8 7 5 29 29 H 1.09001 * 109.49903 * 65.39545 * 9 8 7 30 30 H 1.09009 * 109.49707 * 185.48760 * 9 8 7 31 31 H 1.09001 * 109.34700 * 301.12608 * 10 9 8 32 32 H 0.96997 * 120.00511 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.49730 * 178.74785 * 19 10 9 34 34 H 1.09001 * 109.52309 * 58.66617 * 19 10 9 35 35 H 1.08998 * 109.57964 * 246.19872 * 20 7 5 36 36 H 1.09003 * 109.58802 * 6.47525 * 20 7 5 37 37 H 1.09000 * 115.54842 * 154.42077 * 21 2 1 38 38 H 1.09000 * 117.50137 * 0.02562 * 22 21 2 39 39 H 1.09004 * 117.49907 * 145.02370 * 22 21 2 40 40 H 1.09000 * 117.49824 * 214.97834 * 23 21 2 41 41 H 1.08998 * 117.49749 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1529 0.0000 4 9 3.5198 1.1551 -0.1013 5 6 1.4402 2.4260 0.1104 6 8 1.2939 2.9510 1.1975 7 7 0.9321 3.0092 -0.9934 8 6 1.1963 2.4482 -2.3254 9 6 1.7708 3.5492 -3.2222 10 6 0.8218 4.7503 -3.2197 11 6 1.3689 5.8237 -4.1251 12 1 1.6004 6.8002 -3.7262 13 6 1.5739 5.5589 -5.4626 14 7 1.2924 4.3695 -5.9482 15 14 2.2513 6.8895 -6.5849 16 1 3.5862 7.3178 -6.0953 17 1 2.3774 6.3562 -7.9651 18 1 1.3282 8.0529 -6.5868 19 6 0.6916 5.3004 -1.7975 20 6 0.1033 4.2177 -0.8874 21 6 2.2605 -1.3051 0.0006 22 6 1.4521 -2.5876 -0.2052 23 6 2.0246 -2.2565 1.1753 24 1 -0.3633 0.0884 -1.0239 25 1 -0.3633 -0.9310 0.4353 26 1 -0.3633 0.8424 0.5885 27 1 1.9145 1.6325 -2.2425 28 1 0.2669 2.0745 -2.7553 29 1 2.7450 3.8567 -2.8420 30 1 1.8795 3.1706 -4.2387 31 1 -0.1583 4.4369 -3.5791 32 1 1.4362 4.1834 -6.8892 33 1 0.0330 6.1689 -1.8023 34 1 1.6749 5.5915 -1.4281 35 1 -0.9156 3.9906 -1.2012 36 1 0.0982 4.5680 0.1448 37 1 3.2638 -1.2688 -0.4240 38 1 0.3753 -2.4875 -0.3414 39 1 1.9237 -3.3954 -0.7649 40 1 2.8724 -2.8466 1.5232 41 1 1.3240 -1.9387 1.9475 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907290166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:59 Heat of formation + Delta-G solvation = -65.665846 kcal Electronic energy + Delta-G solvation = -22721.168468 eV Core-core repulsion = 19322.619379 eV Total energy + Delta-G solvation = -3398.549088 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.96321 -41.30291 -38.99246 -38.46517 -35.45475 -34.43570 -32.89323 -31.79281 -28.80826 -27.90019 -25.87226 -24.34710 -23.84461 -23.20863 -21.80646 -20.44933 -19.63844 -18.79888 -18.18931 -18.00709 -17.60003 -16.55934 -16.34255 -15.92624 -15.80271 -15.28480 -14.99142 -14.90225 -14.63444 -14.41058 -14.26811 -13.91029 -13.80418 -13.34746 -13.17116 -13.13133 -12.80908 -12.64963 -12.50251 -12.27025 -12.17092 -11.99758 -11.77904 -11.53283 -11.42914 -11.09357 -11.04354 -10.83554 -10.40976 -9.71931 -9.67465 -8.08680 -6.21365 0.36569 1.14215 1.42650 1.43622 1.50579 1.83710 2.44018 2.92991 3.03321 3.18292 3.48595 3.73244 3.83158 3.99590 4.05555 4.14049 4.22007 4.29289 4.39645 4.52906 4.58448 4.61601 4.65422 4.73972 4.80478 4.82482 4.92051 4.98461 5.05281 5.14194 5.17465 5.25693 5.29602 5.32461 5.37372 5.45599 5.62284 5.96697 6.07764 6.22364 6.38384 6.80979 6.87331 7.46315 8.94826 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025342 B = 0.004347 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.602687 B = 6439.943337 C = 6907.444522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.057 4.057 3 C -0.026 4.026 4 F -0.140 7.140 5 C 0.550 3.450 6 O -0.567 6.567 7 N -0.583 5.583 8 C 0.118 3.882 9 C -0.115 4.115 10 C 0.047 3.953 11 C -0.538 4.538 12 H 0.047 0.953 13 C 0.020 3.980 14 N -0.910 5.910 15 Si 0.947 3.053 16 H -0.278 1.278 17 H -0.282 1.282 18 H -0.273 1.273 19 C -0.115 4.115 20 C 0.114 3.886 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.157 4.157 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.020 0.980 30 H 0.084 0.916 31 H 0.013 0.987 32 H 0.262 0.738 33 H 0.071 0.929 34 H 0.037 0.963 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.618 -14.353 9.552 17.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.059 4.059 3 C -0.048 4.048 4 F -0.119 7.119 5 C 0.337 3.663 6 O -0.448 6.448 7 N -0.314 5.314 8 C -0.004 4.004 9 C -0.154 4.154 10 C 0.028 3.972 11 C -0.576 4.576 12 H 0.065 0.935 13 C -0.179 4.179 14 N -0.549 5.549 15 Si 0.773 3.227 16 H -0.204 1.204 17 H -0.207 1.207 18 H -0.198 1.198 19 C -0.153 4.153 20 C -0.007 4.007 21 C -0.173 4.173 22 C -0.187 4.187 23 C -0.194 4.194 24 H 0.112 0.888 25 H 0.123 0.877 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.038 0.962 30 H 0.102 0.898 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.660 -14.150 9.918 17.483 hybrid contribution 1.079 1.193 -0.901 1.844 sum -1.581 -12.956 9.017 15.864 Atomic orbital electron populations 1.20937 0.88335 1.04303 1.04063 1.22005 0.97419 0.91640 0.94876 1.19074 0.77526 0.94168 1.14017 1.91456 1.29187 1.97088 1.94128 1.18589 0.79353 0.84224 0.84143 1.90759 1.61259 1.64646 1.28126 1.48325 1.49325 1.27230 1.06485 1.21895 1.01406 0.96361 0.80746 1.21821 0.97514 0.96360 0.99708 1.18614 0.94681 0.93078 0.90793 1.21516 1.43433 0.98378 0.94242 0.93499 1.25598 0.95686 0.97322 0.99302 1.69916 1.49148 1.21626 1.14257 0.85786 0.78850 0.79926 0.78106 1.20366 1.20735 1.19813 1.21870 0.99692 0.97530 0.96230 1.21779 0.94042 0.84052 1.00858 1.21043 1.00402 0.88187 1.07703 1.23205 1.00717 0.95867 0.98925 1.23118 1.04168 1.00428 0.91693 0.88762 0.87734 0.92401 0.90195 0.89880 0.96156 0.89795 0.96919 0.92852 0.91002 0.94452 0.89477 0.89730 0.87306 0.86840 0.86766 0.86964 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.97 71.23 0.64 -1.73 16 2 C -0.06 -1.40 5.81 -17.60 -0.10 -1.50 16 3 C -0.03 -0.83 5.09 23.50 0.12 -0.71 16 4 F -0.14 -4.82 16.45 44.97 0.74 -4.08 16 5 C 0.55 20.04 5.65 86.62 0.49 20.53 16 6 O -0.57 -23.71 16.52 -4.05 -0.07 -23.78 16 7 N -0.58 -20.63 2.97 -822.96 -2.45 -23.08 16 8 C 0.12 4.16 6.31 86.36 0.55 4.70 16 9 C -0.12 -5.19 5.16 30.68 0.16 -5.03 16 10 C 0.05 2.22 2.06 -11.50 -0.02 2.20 16 11 C -0.54 -28.86 8.56 25.60 0.22 -28.64 16 12 H 0.05 2.52 7.74 -2.91 -0.02 2.50 16 13 C 0.02 1.08 5.30 84.65 0.45 1.53 16 14 N -0.91 -49.70 11.30 21.45 0.24 -49.46 16 15 Si 0.95 42.71 29.54 68.60 2.03 44.73 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 19 C -0.12 -4.67 5.30 30.67 0.16 -4.50 16 20 C 0.11 3.97 6.44 86.36 0.56 4.52 16 21 C -0.16 -3.05 5.76 -11.54 -0.07 -3.12 16 22 C -0.15 -1.96 9.77 30.62 0.30 -1.66 16 23 C -0.16 -2.29 10.10 30.62 0.31 -1.98 16 24 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.10 1.44 6.33 -2.39 -0.02 1.42 16 26 H 0.06 1.35 7.04 -2.39 -0.02 1.33 16 27 H 0.08 2.63 6.38 -2.39 -0.02 2.61 16 28 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 4.19 6.03 -2.38 -0.01 4.17 16 31 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 33 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.08 2.92 6.99 -2.39 -0.02 2.90 16 37 H 0.11 2.33 7.73 -2.39 -0.02 2.31 16 38 H 0.11 1.23 6.44 -2.39 -0.02 1.21 16 39 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -62.89 332.82 5.27 -57.62 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 1.02 Total: 13.42 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 3.75 Total: -15.39 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: -2.21 Total: -72.53 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.07 Total: -23.78 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.74 Total: -4.08 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -62.89 5.27 -57.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907290166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.045 kcal (2) G-P(sol) polarization free energy of solvation -62.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds