Wall clock time and date at job start Tue Mar 31 2020 05:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33109 * 120.00129 * 2 1 4 4 F 1.35102 * 120.00221 * 185.09090 * 3 2 1 5 5 C 1.47302 * 120.00064 * 5.09041 * 3 2 1 6 6 O 1.21599 * 119.99766 * 268.24667 * 5 3 2 7 7 N 1.34772 * 119.99792 * 88.25209 * 5 3 2 8 8 C 1.47211 * 120.81606 * 355.15336 * 7 5 3 9 9 C 1.53186 * 108.85276 * 126.33981 * 8 7 5 10 10 C 1.53041 * 109.31895 * 54.65128 * 9 8 7 11 11 C 1.53045 * 109.53501 * 298.63839 * 10 9 8 12 12 H 1.09004 * 109.49284 * 301.40457 * 11 10 9 13 13 C 1.50697 * 109.52028 * 181.32765 * 11 10 9 14 14 H 1.08005 * 120.00601 * 0.14435 * 13 11 10 15 15 C 1.37881 * 119.99728 * 180.14269 * 13 11 10 16 16 N 1.31515 * 120.00183 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99741 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47284 * 90.00351 * 17 15 13 19 19 H 1.48500 * 109.46918 * 209.99751 * 17 15 13 20 20 H 1.48493 * 109.47467 * 329.99886 * 17 15 13 21 21 C 1.46929 * 120.63001 * 175.01377 * 7 5 3 22 22 C 1.50705 * 119.99763 * 179.97438 * 2 1 3 23 23 C 1.52994 * 117.50074 * 8.74986 * 22 2 1 24 24 C 1.52998 * 117.50336 * 300.08699 * 22 2 1 25 25 H 1.08997 * 109.47251 * 85.44224 * 1 2 3 26 26 H 1.09000 * 109.47056 * 205.44234 * 1 2 3 27 27 H 1.09001 * 109.46785 * 325.44278 * 1 2 3 28 28 H 1.08995 * 109.53185 * 6.53685 * 8 7 5 29 29 H 1.08993 * 109.56030 * 246.15879 * 8 7 5 30 30 H 1.09007 * 109.49899 * 294.69597 * 9 8 7 31 31 H 1.09004 * 109.49994 * 174.60306 * 9 8 7 32 32 H 1.08999 * 109.46454 * 178.61205 * 10 9 8 33 33 H 1.09003 * 109.44352 * 58.64622 * 10 9 8 34 34 H 0.96994 * 120.00178 * 180.02562 * 16 15 13 35 35 H 1.08998 * 109.58882 * 113.81923 * 21 7 5 36 36 H 1.08997 * 109.58468 * 353.53272 * 21 7 5 37 37 H 1.09005 * 115.54889 * 154.41813 * 22 2 1 38 38 H 1.08999 * 117.49921 * 359.97438 * 23 22 2 39 39 H 1.08998 * 117.49965 * 145.01875 * 23 22 2 40 40 H 1.08990 * 117.50259 * 214.97827 * 24 22 2 41 41 H 1.09003 * 117.49273 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1726 1.1527 0.0000 4 9 3.5196 1.1551 -0.1038 5 6 1.4405 2.4259 0.1132 6 8 1.0853 3.0142 -0.8900 7 7 1.1644 2.9387 1.3286 8 6 1.4915 2.1918 2.5543 9 6 2.3357 3.0855 3.4682 10 6 1.5943 4.4015 3.7147 11 6 1.3875 5.1293 2.3844 12 1 2.3547 5.3162 1.9178 13 6 0.6864 6.4402 2.6313 14 1 0.4171 6.7277 3.6370 15 6 0.3888 7.2728 1.5733 16 7 0.7162 6.9227 0.3487 17 14 -0.4795 8.8981 1.8795 18 1 0.5296 9.9627 2.1107 19 1 -1.3061 9.2483 0.6965 20 1 -1.3525 8.7757 3.0745 21 6 0.5324 4.2588 1.4582 22 6 2.2605 -1.3052 0.0006 23 6 1.4521 -2.5877 -0.2053 24 6 2.0245 -2.2567 1.1752 25 1 -0.3633 0.0817 -1.0244 26 1 -0.3633 -0.9280 0.4415 27 1 -0.3633 0.8464 0.5829 28 1 2.0565 1.2964 2.2955 29 1 0.5715 1.9106 3.0666 30 1 3.2940 3.2916 2.9913 31 1 2.5033 2.5789 4.4186 32 1 2.1818 5.0293 4.3847 33 1 0.6257 4.1927 4.1689 34 1 0.5072 7.5085 -0.3956 35 1 -0.4658 4.1461 1.8812 36 1 0.4626 4.7284 0.4770 37 1 3.2637 -1.2690 -0.4241 38 1 0.3752 -2.4875 -0.3407 39 1 1.9236 -3.3954 -0.7650 40 1 2.8723 -2.8468 1.5231 41 1 1.3246 -1.9384 1.9479 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912297582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:06 Heat of formation + Delta-G solvation = -50.100725 kcal Electronic energy + Delta-G solvation = -22937.526845 eV Core-core repulsion = 19539.652710 eV Total energy + Delta-G solvation = -3397.874134 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.69709 -39.60047 -38.04008 -36.75940 -33.69146 -32.93778 -31.75034 -29.84514 -27.48391 -25.47434 -25.05130 -23.28381 -22.55153 -21.86980 -20.30253 -18.97805 -18.27605 -17.17813 -16.99280 -16.16519 -16.01106 -14.86100 -14.71004 -14.56536 -14.44450 -14.02474 -13.74504 -13.52724 -13.20537 -13.02089 -12.66174 -12.52395 -12.22284 -12.09651 -11.93627 -11.70278 -11.50204 -11.03667 -10.98980 -10.94001 -10.63217 -10.52229 -10.43015 -10.27077 -9.95517 -9.51891 -9.17984 -8.97813 -8.50022 -8.45692 -7.87616 -6.02816 -4.11875 1.53763 2.86026 3.29374 3.37052 3.39144 3.45889 3.73158 4.34198 4.41479 4.53382 4.67373 4.76093 4.92001 4.92320 5.26699 5.29753 5.39624 5.44752 5.53753 5.59448 5.63421 5.65986 5.79271 5.89367 5.94186 5.95102 6.14178 6.24046 6.27422 6.46592 6.57488 6.61404 6.80139 6.92658 7.05951 7.15368 7.57555 7.81557 7.93034 8.09918 8.33107 8.60496 8.92406 9.54159 11.02741 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029067 B = 0.004587 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.048171 B = 6102.219516 C = 6471.191559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.108 4.108 3 C 0.030 3.970 4 F -0.129 7.129 5 C 0.539 3.461 6 O -0.515 6.515 7 N -0.590 5.590 8 C 0.108 3.892 9 C -0.134 4.134 10 C -0.111 4.111 11 C 0.039 3.961 12 H 0.030 0.970 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.881 5.881 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.111 3.889 22 C -0.120 4.120 23 C -0.173 4.173 24 C -0.165 4.165 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.264 0.736 35 H 0.047 0.953 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.106 -17.648 2.952 17.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.110 4.110 3 C 0.008 3.992 4 F -0.108 7.108 5 C 0.323 3.677 6 O -0.392 6.392 7 N -0.323 5.323 8 C -0.015 4.015 9 C -0.172 4.172 10 C -0.148 4.148 11 C 0.020 3.980 12 H 0.048 0.952 13 C -0.560 4.560 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.519 5.519 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.009 4.009 22 C -0.138 4.138 23 C -0.210 4.210 24 C -0.202 4.202 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.142 0.858 37 H 0.132 0.868 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.932 -17.231 2.225 17.399 hybrid contribution -0.031 0.874 0.098 0.880 sum 0.901 -16.356 2.323 16.545 Atomic orbital electron populations 1.20766 0.89834 1.03100 1.03379 1.21534 0.96426 0.91556 1.01498 1.19543 0.77628 0.94806 1.07228 1.91478 1.28757 1.97143 1.93383 1.18221 0.80896 0.83954 0.84621 1.90856 1.52936 1.59570 1.35788 1.48612 1.59193 1.20573 1.03906 1.21736 0.99254 0.94401 0.86153 1.21947 0.99330 0.97671 0.98257 1.21634 0.98707 0.94239 1.00250 1.18985 0.96327 0.92782 0.89878 0.95216 1.21067 1.39143 1.02264 0.93490 0.92237 1.25063 0.95578 0.98193 0.95185 1.69872 1.46251 1.37137 0.98610 0.86570 0.79640 0.83907 0.77762 1.20654 1.21156 1.19872 1.22423 0.94527 0.77840 1.06072 1.20929 0.99986 0.88237 1.04630 1.23049 1.00323 0.97915 0.99711 1.22990 1.03610 1.01953 0.91671 0.90199 0.90868 0.90907 0.91178 0.91559 0.92012 0.91987 0.92836 0.93064 0.92553 0.93500 0.85840 0.86767 0.88116 0.88472 0.88316 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 8.97 36.01 0.32 -1.07 16 2 C -0.11 -1.47 5.60 -101.13 -0.57 -2.03 16 3 C 0.03 0.52 5.20 -37.68 -0.20 0.32 16 4 F -0.13 -2.25 16.45 2.25 0.04 -2.22 16 5 C 0.54 11.26 5.66 -12.58 -0.07 11.19 16 6 O -0.52 -12.92 16.54 5.28 0.09 -12.84 16 7 N -0.59 -11.90 2.96 -173.87 -0.51 -12.41 16 8 C 0.11 1.71 6.36 -3.56 -0.02 1.69 16 9 C -0.13 -2.18 6.08 -26.61 -0.16 -2.34 16 10 C -0.11 -2.17 5.11 -26.69 -0.14 -2.30 16 11 C 0.04 0.96 2.25 -91.65 -0.21 0.76 16 12 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 13 C -0.52 -13.95 8.57 -34.44 -0.29 -14.25 16 14 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 15 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 16 N -0.88 -25.61 11.39 55.43 0.63 -24.98 16 17 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.11 2.65 5.38 -3.71 -0.02 2.63 16 22 C -0.12 -1.31 5.76 -91.77 -0.53 -1.84 16 23 C -0.17 -1.46 9.77 -26.70 -0.26 -1.72 16 24 C -0.17 -1.42 10.10 -26.70 -0.27 -1.69 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 0.69 6.35 -51.93 -0.33 0.36 16 27 H 0.07 1.01 7.00 -51.93 -0.36 0.64 16 28 H 0.07 0.99 6.19 -51.93 -0.32 0.67 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.12 3.47 5.14 -51.93 -0.27 3.20 16 37 H 0.11 1.29 7.73 -51.93 -0.40 0.88 16 38 H 0.10 0.80 6.44 -51.93 -0.33 0.46 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 332.79 15.07 5.02 5.02 Total: -1.00 -30.64 332.79 -8.48 -39.12 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.21 Total: 1.26 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -2.51 Total: -9.03 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.12 Total: -37.39 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.64 -8.48 -39.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912297582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.977 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds