Wall clock time and date at job start Tue Mar 31 2020 05:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33123 * 120.00022 * 2 1 4 4 F 1.35095 * 119.99809 * 174.95163 * 3 2 1 5 5 C 1.47297 * 119.99878 * 354.95720 * 3 2 1 6 6 O 1.21606 * 119.99979 * 94.87475 * 5 3 2 7 7 N 1.34773 * 119.99877 * 274.87876 * 5 3 2 8 8 C 1.46921 * 120.63083 * 354.83456 * 7 5 3 9 9 C 1.53197 * 108.77216 * 233.58659 * 8 7 5 10 10 C 1.53040 * 109.31147 * 305.36289 * 9 8 7 11 11 C 1.53033 * 109.53965 * 61.36864 * 10 9 8 12 12 H 1.09004 * 109.50018 * 58.58064 * 11 10 9 13 13 C 1.50701 * 109.49969 * 178.68047 * 11 10 9 14 14 H 1.07993 * 119.99784 * 0.02562 * 13 11 10 15 15 C 1.37875 * 120.00026 * 179.97438 * 13 11 10 16 16 N 1.31519 * 119.99990 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 120.00083 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47118 * 60.00232 * 17 15 13 19 19 H 1.48501 * 109.47461 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47090 * 300.00370 * 17 15 13 21 21 C 1.46924 * 120.62896 * 174.55290 * 7 5 3 22 22 C 1.50705 * 120.00144 * 180.02562 * 2 1 3 23 23 C 1.53002 * 117.49503 * 60.00384 * 22 2 1 24 24 C 1.53005 * 60.02776 * 252.49671 * 23 22 2 25 25 H 1.09006 * 109.47050 * 274.93801 * 1 2 3 26 26 H 1.08998 * 109.46996 * 34.93938 * 1 2 3 27 27 H 1.09001 * 109.46775 * 154.94146 * 1 2 3 28 28 H 1.08995 * 109.58874 * 353.37279 * 8 7 5 29 29 H 1.08996 * 109.59010 * 113.66099 * 8 7 5 30 30 H 1.09000 * 109.49990 * 65.31914 * 9 8 7 31 31 H 1.09010 * 109.49570 * 185.41335 * 9 8 7 32 32 H 1.09000 * 109.45740 * 181.38717 * 10 9 8 33 33 H 1.08995 * 109.46001 * 301.35690 * 10 9 8 34 34 H 0.96995 * 120.00080 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.58988 * 246.20058 * 21 7 5 36 36 H 1.09001 * 109.58822 * 6.62455 * 21 7 5 37 37 H 1.09000 * 115.55171 * 205.66612 * 22 2 1 38 38 H 1.08996 * 117.49961 * 359.97438 * 23 22 2 39 39 H 1.09002 * 117.49656 * 145.00132 * 23 22 2 40 40 H 1.09002 * 117.49940 * 107.50487 * 24 23 22 41 41 H 1.08995 * 117.50134 * 252.52215 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1726 1.1529 0.0000 4 9 3.5196 1.1551 0.1030 5 6 1.4404 2.4260 -0.1121 6 8 1.1356 3.0425 0.8908 7 7 1.1081 2.9076 -1.3262 8 6 1.5659 2.2346 -2.5494 9 6 2.2773 3.2590 -3.4390 10 6 1.3458 4.4478 -3.6866 11 6 1.0066 5.1186 -2.3537 12 1 1.9253 5.4467 -1.8673 13 6 0.1155 6.3084 -2.6017 14 1 -0.1801 6.5609 -3.6092 15 6 -0.3233 7.0738 -1.5422 16 7 0.0362 6.7659 -0.3151 17 14 -1.4284 8.5481 -1.8495 18 1 -2.6802 8.0991 -2.5104 19 1 -1.7571 9.1987 -0.5557 20 1 -0.7261 9.5188 -2.7269 21 6 0.2762 4.1121 -1.4517 22 6 2.2605 -1.3051 -0.0006 23 6 2.0261 -2.2556 -1.1764 24 6 1.4517 -2.5887 0.2020 25 1 -0.3633 0.0885 1.0239 26 1 -0.3633 0.8424 -0.5885 27 1 -0.3633 -0.9310 -0.4353 28 1 2.2579 1.4339 -2.2888 29 1 0.7094 1.8190 -3.0802 30 1 3.1840 3.6046 -2.9425 31 1 2.5372 2.7959 -4.3910 32 1 1.8404 5.1668 -4.3396 33 1 0.4287 4.0979 -4.1606 34 1 -0.2721 7.3046 0.4302 35 1 -0.6836 3.8486 -1.8961 36 1 0.1170 4.5505 -0.4666 37 1 3.2632 -1.2693 0.4254 38 1 1.3266 -1.9371 -1.9493 39 1 2.8746 -2.8451 -1.5239 40 1 0.3744 -2.4893 0.3358 41 1 1.9223 -3.3971 0.7615 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912297583.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:08 Heat of formation + Delta-G solvation = -49.784649 kcal Electronic energy + Delta-G solvation = -22935.633120 eV Core-core repulsion = 19537.772692 eV Total energy + Delta-G solvation = -3397.860428 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.70808 -39.59985 -38.03928 -36.74094 -33.69252 -32.93517 -31.73821 -29.84191 -27.47713 -25.46710 -25.04111 -23.27549 -22.54619 -21.87241 -20.29713 -19.00515 -18.26902 -17.15813 -16.99790 -16.16586 -16.01190 -14.86143 -14.71471 -14.55478 -14.43911 -14.07837 -13.73996 -13.41366 -13.19484 -13.03327 -12.65147 -12.54744 -12.22067 -12.12815 -11.90436 -11.70334 -11.49553 -11.04251 -10.97551 -10.93002 -10.63461 -10.55359 -10.42976 -10.26915 -9.93672 -9.50451 -9.16818 -8.97812 -8.50217 -8.45973 -7.86488 -6.01588 -4.10985 1.53657 2.87536 3.30553 3.37036 3.38066 3.45326 3.73245 4.35197 4.42047 4.53006 4.67174 4.76162 4.92279 4.92546 5.27135 5.29857 5.39751 5.45592 5.54376 5.60389 5.63797 5.66334 5.79722 5.89540 5.94695 5.95634 6.14439 6.24428 6.27596 6.48165 6.56683 6.61734 6.80051 6.93069 7.05681 7.15764 7.57610 7.81867 7.93522 8.09888 8.33943 8.61368 8.92970 9.54879 11.03758 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027750 B = 0.004610 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.769559 B = 6072.301155 C = 6411.238399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.105 4.105 3 C 0.028 3.972 4 F -0.130 7.130 5 C 0.538 3.462 6 O -0.514 6.514 7 N -0.590 5.590 8 C 0.109 3.891 9 C -0.133 4.133 10 C -0.111 4.111 11 C 0.040 3.960 12 H 0.031 0.969 13 C -0.523 4.523 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.880 5.880 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.111 3.889 22 C -0.120 4.120 23 C -0.165 4.165 24 C -0.173 4.173 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.265 0.735 35 H 0.047 0.953 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 -17.362 -2.994 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.108 4.108 3 C 0.006 3.994 4 F -0.109 7.109 5 C 0.321 3.679 6 O -0.389 6.389 7 N -0.322 5.322 8 C -0.014 4.014 9 C -0.171 4.171 10 C -0.148 4.148 11 C 0.021 3.979 12 H 0.049 0.951 13 C -0.561 4.561 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.518 5.518 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.009 4.009 22 C -0.138 4.138 23 C -0.202 4.202 24 C -0.210 4.210 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.142 0.858 37 H 0.132 0.868 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.405 -16.932 -2.262 17.251 hybrid contribution -0.186 0.777 -0.111 0.807 sum 2.218 -16.155 -2.373 16.478 Atomic orbital electron populations 1.20779 0.89820 1.03202 1.03389 1.21529 0.96440 0.91517 1.01281 1.19559 0.77571 0.94819 1.07458 1.91471 1.28829 1.97161 1.93438 1.18253 0.80865 0.84035 0.84705 1.90871 1.54572 1.57698 1.35805 1.48545 1.51014 1.28797 1.03888 1.21662 0.98501 0.94980 0.86285 1.21944 0.99518 0.97318 0.98367 1.21633 0.97507 0.95420 1.00270 1.19046 0.96532 0.92389 0.89923 0.95136 1.21033 1.31019 1.10816 0.93235 0.92326 1.25060 0.96182 0.97553 0.95199 1.69879 1.44288 1.39183 0.98404 0.86640 0.81011 0.82837 0.77416 1.20228 1.21243 1.20264 1.22513 0.91009 0.81284 1.06073 1.20940 0.99979 0.88245 1.04648 1.22981 1.03592 1.01923 0.91692 1.23052 1.00325 0.97872 0.99753 0.90219 0.90770 0.90866 0.91272 0.91683 0.92013 0.91984 0.92844 0.93080 0.92516 0.93470 0.85826 0.86768 0.88354 0.88321 0.88102 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 8.98 36.00 0.32 -1.11 16 2 C -0.11 -1.44 5.82 -101.13 -0.59 -2.03 16 3 C 0.03 0.48 5.09 -37.68 -0.19 0.29 16 4 F -0.13 -2.24 16.45 2.25 0.04 -2.21 16 5 C 0.54 11.20 5.71 -12.58 -0.07 11.13 16 6 O -0.51 -12.95 16.52 5.27 0.09 -12.86 16 7 N -0.59 -11.83 2.83 -173.83 -0.49 -12.32 16 8 C 0.11 1.73 6.31 -3.71 -0.02 1.71 16 9 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 10 C -0.11 -2.17 5.10 -26.69 -0.14 -2.30 16 11 C 0.04 0.98 2.26 -91.43 -0.21 0.78 16 12 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 13 C -0.52 -13.98 8.56 -34.44 -0.29 -14.28 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 16 N -0.88 -25.57 11.41 55.43 0.63 -24.94 16 17 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 C 0.11 2.63 5.44 -3.48 -0.02 2.61 16 22 C -0.12 -1.31 5.76 -91.73 -0.53 -1.84 16 23 C -0.16 -1.42 10.10 -26.73 -0.27 -1.69 16 24 C -0.17 -1.47 9.77 -26.69 -0.26 -1.73 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.07 1.05 6.93 -51.93 -0.36 0.69 16 27 H 0.07 0.70 6.33 -51.93 -0.33 0.37 16 28 H 0.07 0.99 6.38 -51.93 -0.33 0.65 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.12 3.45 5.14 -51.93 -0.27 3.18 16 37 H 0.11 1.28 7.73 -51.93 -0.40 0.88 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 0.81 6.43 -51.93 -0.33 0.47 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 332.91 15.07 5.02 5.02 Total: -1.00 -30.61 332.91 -8.48 -39.08 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.21 Total: 1.33 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -2.52 Total: -9.15 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.14 Total: -37.26 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.61 -8.48 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912297583.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.702 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds