Wall clock time and date at job start Tue Mar 31 2020 05:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.46981 * 2 1 4 4 C 1.46901 * 110.99955 * 63.36849 * 3 2 1 5 5 C 1.52999 * 109.47277 * 77.02385 * 4 3 2 6 6 H 1.08997 * 109.47164 * 54.52686 * 5 4 3 7 7 O 1.42906 * 109.46922 * 294.53258 * 5 4 3 8 8 C 1.50697 * 109.47419 * 174.53267 * 5 4 3 9 9 H 1.08001 * 119.99889 * 359.97438 * 8 5 4 10 10 C 1.37875 * 120.00079 * 179.97438 * 8 5 4 11 11 N 1.31518 * 119.99853 * 179.97438 * 10 8 5 12 12 Si 1.86797 * 120.00155 * 0.02562 * 10 8 5 13 13 H 1.48495 * 109.47364 * 89.99847 * 12 10 8 14 14 H 1.48505 * 109.47117 * 209.99789 * 12 10 8 15 15 H 1.48511 * 109.46884 * 329.99629 * 12 10 8 16 16 C 1.46905 * 111.00071 * 299.41300 * 3 2 1 17 17 H 1.09001 * 109.46650 * 65.43506 * 16 3 2 18 18 C 1.52994 * 109.47106 * 305.43040 * 16 3 2 19 19 C 1.50700 * 109.46882 * 185.43025 * 16 3 2 20 20 C 1.38247 * 119.97369 * 45.48537 * 19 16 3 21 21 C 1.38200 * 120.02380 * 179.71923 * 20 19 16 22 22 C 1.38466 * 119.97440 * 0.53396 * 21 20 19 23 23 F 1.35096 * 120.02484 * 179.72123 * 22 21 20 24 24 C 1.38452 * 119.94720 * 359.74144 * 22 21 20 25 25 C 1.38200 * 119.97593 * 0.02562 * 24 22 21 26 26 H 1.08997 * 109.46798 * 294.43324 * 1 2 3 27 27 H 1.08995 * 109.47488 * 54.43505 * 1 2 3 28 28 H 1.09002 * 109.46985 * 174.43822 * 1 2 3 29 29 H 1.08997 * 109.47197 * 120.00111 * 2 1 3 30 30 H 1.09007 * 109.47189 * 240.00564 * 2 1 3 31 31 H 1.09002 * 109.46874 * 197.02159 * 4 3 2 32 32 H 1.08997 * 109.47026 * 317.02465 * 4 3 2 33 33 H 0.96701 * 113.99865 * 304.41691 * 7 5 4 34 34 H 0.97000 * 119.99797 * 179.97438 * 11 10 8 35 35 H 1.09006 * 109.47124 * 180.02562 * 18 16 3 36 36 H 1.08990 * 109.47323 * 300.00025 * 18 16 3 37 37 H 1.09000 * 109.46839 * 60.00009 * 18 16 3 38 38 H 1.08005 * 119.99164 * 359.97438 * 20 19 16 39 39 H 1.08003 * 120.01476 * 180.25146 * 21 20 19 40 40 H 1.08003 * 120.01592 * 179.97438 * 24 22 21 41 41 H 1.08000 * 119.98783 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6155 2.0862 1.2259 5 6 2.5100 1.6431 2.3854 6 1 3.5554 1.7931 2.1157 7 8 2.2829 0.2593 2.6604 8 6 2.1853 2.4585 3.6105 9 1 1.4180 3.2173 3.5663 10 6 2.8679 2.2359 4.7876 11 7 2.5848 2.9479 5.8565 12 14 4.1955 0.9241 4.8637 13 1 5.5060 1.5248 4.5074 14 1 4.2636 0.3680 6.2390 15 1 3.8724 -0.1634 3.9054 16 6 1.5601 2.1059 -1.1947 17 1 0.4750 2.2045 -1.1645 18 6 1.9669 1.3279 -2.4477 19 6 2.1883 3.4753 -1.2276 20 6 3.5381 3.6224 -0.9677 21 6 4.1164 4.8771 -1.0033 22 6 3.3411 5.9884 -1.2886 23 9 3.9043 7.2160 -1.3182 24 6 1.9883 5.8404 -1.5431 25 6 1.4131 4.5842 -1.5117 26 1 -0.3633 0.4251 0.9356 27 1 -0.3634 0.5977 -0.8359 28 1 -0.3633 -1.0229 -0.0996 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 1.7166 3.1616 1.0795 32 1 0.5774 1.8468 1.4560 33 1 1.3585 0.0409 2.8418 34 1 3.0647 2.7911 6.6847 35 1 1.6263 1.8630 -3.3342 36 1 3.0519 1.2293 -2.4778 37 1 1.5126 0.3374 -2.4238 38 1 4.1418 2.7561 -0.7408 39 1 5.1717 4.9914 -0.8043 40 1 1.3824 6.7064 -1.7653 41 1 0.3579 4.4685 -1.7106 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929332367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:55 Heat of formation + Delta-G solvation = -61.031406 kcal Electronic energy + Delta-G solvation = -22928.654200 eV Core-core repulsion = 19530.306076 eV Total energy + Delta-G solvation = -3398.348124 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.76097 -39.73372 -37.81276 -35.58083 -32.35237 -32.11579 -31.01497 -30.33801 -28.76615 -27.59424 -24.45116 -23.98675 -22.91388 -21.81130 -20.49436 -19.19569 -17.57239 -17.21660 -16.48465 -15.95247 -15.54338 -15.38654 -14.80273 -14.60716 -14.41927 -14.18318 -13.58676 -13.42299 -13.34460 -13.03844 -12.94696 -12.68912 -12.46581 -12.18510 -12.05771 -11.62874 -11.48474 -11.35340 -11.02847 -10.89809 -10.84411 -10.60635 -10.32475 -10.22926 -9.97808 -9.02262 -8.95671 -8.59182 -8.40683 -8.21933 -7.71327 -6.09450 -4.20190 1.26234 1.38791 3.42355 3.51136 3.70072 3.77396 4.29268 4.39424 4.56980 4.76223 4.88151 4.99942 5.23503 5.25457 5.31690 5.41858 5.44524 5.53800 5.55451 5.64817 5.72389 5.79694 5.87838 6.00001 6.03046 6.10429 6.15004 6.21924 6.22817 6.25167 6.39558 6.46925 6.59948 6.70464 6.79927 7.02513 7.28139 7.51872 7.59972 7.76953 8.31654 8.84906 9.02883 9.55873 11.01340 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013723 B = 0.006522 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.906694 B = 4291.915341 C = 5659.922539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.033 3.967 3 N -0.525 5.525 4 C 0.035 3.965 5 C 0.205 3.795 6 H 0.061 0.939 7 O -0.575 6.575 8 C -0.562 4.562 9 H 0.069 0.931 10 C 0.083 3.917 11 N -0.895 5.895 12 Si 0.873 3.127 13 H -0.288 1.288 14 H -0.298 1.298 15 H -0.216 1.216 16 C 0.115 3.885 17 H 0.047 0.953 18 C -0.142 4.142 19 C -0.081 4.081 20 C -0.056 4.056 21 C -0.155 4.155 22 C 0.091 3.909 23 F -0.145 7.145 24 C -0.157 4.157 25 C -0.091 4.091 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.349 0.651 34 H 0.264 0.736 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.141 0.859 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.278 -1.378 -17.316 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.095 4.095 3 N -0.248 5.248 4 C -0.092 4.092 5 C 0.147 3.853 6 H 0.078 0.922 7 O -0.381 6.381 8 C -0.600 4.600 9 H 0.087 0.913 10 C -0.121 4.121 11 N -0.532 5.532 12 Si 0.700 3.300 13 H -0.215 1.215 14 H -0.225 1.225 15 H -0.139 1.139 16 C 0.006 3.994 17 H 0.065 0.935 18 C -0.199 4.199 19 C -0.082 4.082 20 C -0.074 4.074 21 C -0.173 4.173 22 C 0.072 3.928 23 F -0.124 7.124 24 C -0.176 4.176 25 C -0.109 4.109 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.128 0.872 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.195 0.805 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.059 -1.344 -17.264 17.349 hybrid contribution -0.817 0.092 0.458 0.941 sum -1.876 -1.252 -16.807 16.958 Atomic orbital electron populations 1.22434 0.99288 1.01510 1.01826 1.22586 0.92111 0.90489 1.04288 1.62371 1.59163 1.02044 1.01258 1.22891 0.98166 0.98394 0.89724 1.19742 0.95438 0.79193 0.90916 0.92160 1.86702 1.30179 1.29109 1.92093 1.21494 1.22858 1.21031 0.94579 0.91301 1.24987 0.96534 0.95393 0.95146 1.69968 1.41547 1.40158 1.01538 0.86991 0.80777 0.84473 0.77763 1.21511 1.22497 1.13858 1.20548 0.96491 0.90224 0.92110 0.93521 1.21892 1.02523 0.99738 0.95763 1.19850 0.94092 0.94676 0.99535 1.20949 0.94645 0.96711 0.95110 1.21201 1.00765 0.92006 1.03365 1.17731 0.91992 0.79919 1.03164 1.91472 1.85515 1.41206 1.94208 1.21001 0.93310 0.98738 1.04548 1.20853 0.99684 0.91242 0.99135 0.92154 0.93297 0.92693 0.87241 0.91660 0.90996 0.94675 0.80478 0.92680 0.92661 0.91679 0.92040 0.84159 0.84928 0.85172 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.39 9.28 37.16 0.34 -2.05 16 2 C 0.03 0.46 5.36 -3.82 -0.02 0.44 16 3 N -0.52 -8.08 3.97 -228.03 -0.91 -8.98 16 4 C 0.04 0.66 4.36 -3.82 -0.02 0.65 16 5 C 0.20 4.61 2.54 -27.88 -0.07 4.54 16 6 H 0.06 1.45 7.57 -51.93 -0.39 1.06 16 7 O -0.57 -12.23 7.37 -35.23 -0.26 -12.49 16 8 C -0.56 -15.43 9.37 -34.44 -0.32 -15.75 16 9 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 10 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 11 N -0.89 -27.42 13.96 55.43 0.77 -26.65 16 12 Si 0.87 21.86 26.99 -169.99 -4.59 17.28 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 15 H -0.22 -5.22 5.31 56.52 0.30 -4.92 16 16 C 0.11 1.50 1.74 -68.86 -0.12 1.38 16 17 H 0.05 0.61 6.30 -51.93 -0.33 0.28 16 18 C -0.14 -1.54 8.71 37.15 0.32 -1.22 16 19 C -0.08 -1.11 3.33 -104.62 -0.35 -1.46 16 20 C -0.06 -0.80 9.04 -39.59 -0.36 -1.16 16 21 C -0.15 -2.18 10.03 -39.51 -0.40 -2.57 16 22 C 0.09 1.30 7.30 -39.42 -0.29 1.01 16 23 F -0.15 -2.14 17.27 2.25 0.04 -2.10 16 24 C -0.16 -2.03 10.03 -39.52 -0.40 -2.43 16 25 C -0.09 -1.15 9.66 -39.59 -0.38 -1.53 16 26 H 0.06 0.83 6.43 -51.93 -0.33 0.50 16 27 H 0.05 0.58 6.25 -51.93 -0.32 0.25 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.11 1.74 5.25 -51.93 -0.27 1.47 16 30 H 0.07 0.82 6.18 -51.92 -0.32 0.50 16 31 H 0.07 1.44 6.54 -51.93 -0.34 1.10 16 32 H 0.04 0.66 5.87 -51.93 -0.30 0.35 16 33 H 0.35 6.63 8.90 45.56 0.41 7.03 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 37 H 0.06 0.63 6.31 -51.93 -0.33 0.30 16 38 H 0.14 2.02 7.89 -52.48 -0.41 1.60 16 39 H 0.13 1.67 8.06 -52.48 -0.42 1.24 16 40 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 41 H 0.13 1.33 7.99 -52.49 -0.42 0.91 16 LS Contribution 323.56 15.07 4.88 4.88 Total: -1.00 -30.38 323.56 -7.35 -37.73 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.14 Total: 8.18 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -2.15 Total: -17.85 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.13 Total: -35.63 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.26 Total: -12.49 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.59 Total: 17.28 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.38 -7.35 -37.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929332367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.300 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds