Wall clock time and date at job start Tue Mar 31 2020 05:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.46981 * 2 1 4 4 C 1.46901 * 110.99955 * 63.36849 * 3 2 1 5 5 C 1.52999 * 109.47277 * 77.02385 * 4 3 2 6 6 H 1.08997 * 109.47164 * 54.52686 * 5 4 3 7 7 O 1.42906 * 109.46922 * 294.53258 * 5 4 3 8 8 C 1.50697 * 109.47419 * 174.53267 * 5 4 3 9 9 H 1.08001 * 119.99889 * 359.97438 * 8 5 4 10 10 C 1.37875 * 120.00079 * 179.97438 * 8 5 4 11 11 N 1.31518 * 119.99853 * 179.97438 * 10 8 5 12 12 Si 1.86797 * 120.00155 * 0.02562 * 10 8 5 13 13 H 1.48495 * 109.47364 * 89.99847 * 12 10 8 14 14 H 1.48505 * 109.47117 * 209.99789 * 12 10 8 15 15 H 1.48511 * 109.46884 * 329.99629 * 12 10 8 16 16 C 1.46905 * 111.00071 * 299.41300 * 3 2 1 17 17 H 1.09001 * 109.46650 * 65.43506 * 16 3 2 18 18 C 1.52994 * 109.47106 * 305.43040 * 16 3 2 19 19 C 1.50700 * 109.46882 * 185.43025 * 16 3 2 20 20 C 1.38247 * 119.97369 * 45.48537 * 19 16 3 21 21 C 1.38200 * 120.02380 * 179.71923 * 20 19 16 22 22 C 1.38466 * 119.97440 * 0.53396 * 21 20 19 23 23 F 1.35096 * 120.02484 * 179.72123 * 22 21 20 24 24 C 1.38452 * 119.94720 * 359.74144 * 22 21 20 25 25 C 1.38200 * 119.97593 * 0.02562 * 24 22 21 26 26 H 1.08997 * 109.46798 * 294.43324 * 1 2 3 27 27 H 1.08995 * 109.47488 * 54.43505 * 1 2 3 28 28 H 1.09002 * 109.46985 * 174.43822 * 1 2 3 29 29 H 1.08997 * 109.47197 * 120.00111 * 2 1 3 30 30 H 1.09007 * 109.47189 * 240.00564 * 2 1 3 31 31 H 1.09002 * 109.46874 * 197.02159 * 4 3 2 32 32 H 1.08997 * 109.47026 * 317.02465 * 4 3 2 33 33 H 0.96701 * 113.99865 * 304.41691 * 7 5 4 34 34 H 0.97000 * 119.99797 * 179.97438 * 11 10 8 35 35 H 1.09006 * 109.47124 * 180.02562 * 18 16 3 36 36 H 1.08990 * 109.47323 * 300.00025 * 18 16 3 37 37 H 1.09000 * 109.46839 * 60.00009 * 18 16 3 38 38 H 1.08005 * 119.99164 * 359.97438 * 20 19 16 39 39 H 1.08003 * 120.01476 * 180.25146 * 21 20 19 40 40 H 1.08003 * 120.01592 * 179.97438 * 24 22 21 41 41 H 1.08000 * 119.98783 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6155 2.0862 1.2259 5 6 2.5100 1.6431 2.3854 6 1 3.5554 1.7931 2.1157 7 8 2.2829 0.2593 2.6604 8 6 2.1853 2.4585 3.6105 9 1 1.4180 3.2173 3.5663 10 6 2.8679 2.2359 4.7876 11 7 2.5848 2.9479 5.8565 12 14 4.1955 0.9241 4.8637 13 1 5.5060 1.5248 4.5074 14 1 4.2636 0.3680 6.2390 15 1 3.8724 -0.1634 3.9054 16 6 1.5601 2.1059 -1.1947 17 1 0.4750 2.2045 -1.1645 18 6 1.9669 1.3279 -2.4477 19 6 2.1883 3.4753 -1.2276 20 6 3.5381 3.6224 -0.9677 21 6 4.1164 4.8771 -1.0033 22 6 3.3411 5.9884 -1.2886 23 9 3.9043 7.2160 -1.3182 24 6 1.9883 5.8404 -1.5431 25 6 1.4131 4.5842 -1.5117 26 1 -0.3633 0.4251 0.9356 27 1 -0.3634 0.5977 -0.8359 28 1 -0.3633 -1.0229 -0.0996 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 1.7166 3.1616 1.0795 32 1 0.5774 1.8468 1.4560 33 1 1.3585 0.0409 2.8418 34 1 3.0647 2.7911 6.6847 35 1 1.6263 1.8630 -3.3342 36 1 3.0519 1.2293 -2.4778 37 1 1.5126 0.3374 -2.4238 38 1 4.1418 2.7561 -0.7408 39 1 5.1717 4.9914 -0.8043 40 1 1.3824 6.7064 -1.7653 41 1 0.3579 4.4685 -1.7106 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929332367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:55 Heat of formation + Delta-G solvation = -80.699643 kcal Electronic energy + Delta-G solvation = -22929.507079 eV Core-core repulsion = 19530.306076 eV Total energy + Delta-G solvation = -3399.201003 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.87915 -40.85479 -39.08319 -37.17030 -34.41512 -33.29203 -32.06189 -31.76589 -29.77136 -29.21221 -26.09445 -25.08196 -23.95617 -23.02558 -22.11054 -20.40796 -19.20814 -18.60681 -17.59742 -17.17205 -16.77999 -16.68188 -16.52147 -16.31417 -15.77293 -15.33869 -15.00416 -14.64639 -14.60634 -14.38901 -14.14471 -14.02812 -13.72657 -13.41345 -13.19745 -12.96425 -12.89361 -12.68203 -12.47728 -12.31753 -12.15644 -11.94581 -11.80012 -11.66077 -11.44318 -11.02645 -10.77223 -9.99984 -9.97445 -9.45927 -8.98457 -8.32653 -6.46307 0.19150 0.34656 1.42131 1.46638 1.76962 2.46278 2.63715 3.06084 3.11829 3.33518 3.73026 3.85320 4.00261 4.07930 4.21893 4.32399 4.35431 4.41871 4.49521 4.53163 4.59035 4.63037 4.74316 4.85844 4.94785 5.01740 5.04253 5.14908 5.19258 5.20599 5.30279 5.33462 5.38969 5.46461 5.53088 5.62696 5.71659 5.97789 6.10239 6.31135 6.43814 6.66574 7.21546 7.38316 8.81834 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013723 B = 0.006522 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.906694 B = 4291.915341 C = 5659.922539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.033 3.967 3 N -0.530 5.530 4 C 0.055 3.945 5 C 0.216 3.784 6 H 0.049 0.951 7 O -0.572 6.572 8 C -0.561 4.561 9 H 0.031 0.969 10 C 0.027 3.973 11 N -0.943 5.943 12 Si 0.940 3.060 13 H -0.290 1.290 14 H -0.301 1.301 15 H -0.198 1.198 16 C 0.117 3.883 17 H 0.055 0.945 18 C -0.136 4.136 19 C -0.088 4.088 20 C -0.069 4.069 21 C -0.165 4.165 22 C 0.071 3.929 23 F -0.152 7.152 24 C -0.157 4.157 25 C -0.092 4.092 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.035 0.965 33 H 0.362 0.638 34 H 0.265 0.735 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.151 0.849 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.778 -2.975 -19.392 19.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.094 4.094 3 N -0.254 5.254 4 C -0.074 4.074 5 C 0.158 3.842 6 H 0.066 0.934 7 O -0.379 6.379 8 C -0.599 4.599 9 H 0.049 0.951 10 C -0.172 4.172 11 N -0.583 5.583 12 Si 0.764 3.236 13 H -0.217 1.217 14 H -0.228 1.228 15 H -0.120 1.120 16 C 0.009 3.991 17 H 0.072 0.928 18 C -0.193 4.193 19 C -0.089 4.089 20 C -0.087 4.087 21 C -0.184 4.184 22 C 0.052 3.948 23 F -0.130 7.130 24 C -0.175 4.175 25 C -0.110 4.110 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.210 0.790 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.169 0.831 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.574 -2.954 -19.367 19.654 hybrid contribution -0.729 0.632 1.065 1.437 sum -2.303 -2.323 -18.302 18.592 Atomic orbital electron populations 1.22352 0.97977 1.02718 1.01283 1.22573 0.93175 0.89306 1.04361 1.62246 1.59755 1.02737 1.00645 1.22438 0.97124 0.97583 0.90206 1.19432 0.95540 0.79046 0.90214 0.93351 1.86626 1.31410 1.27631 1.92200 1.21866 1.21183 1.20368 0.96516 0.95084 1.25860 0.98875 0.97587 0.94883 1.70101 1.43397 1.42437 1.02368 0.85981 0.77690 0.82169 0.77740 1.21676 1.22784 1.12000 1.20624 0.96771 0.89917 0.91787 0.92765 1.21859 1.02317 1.00119 0.94987 1.20053 0.93946 0.95530 0.99354 1.20986 0.95218 0.96579 0.95944 1.21354 1.01369 0.92155 1.03519 1.17973 0.92831 0.79757 1.04221 1.91451 1.85715 1.41500 1.94374 1.21296 0.92907 0.99786 1.03530 1.21151 1.00822 0.90693 0.98319 0.93891 0.92284 0.90930 0.89092 0.89595 0.92662 0.94653 0.79043 0.92654 0.91062 0.92189 0.90926 0.84623 0.84258 0.83078 0.83087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.03 9.28 71.98 0.67 -3.37 16 2 C 0.03 0.82 5.36 86.30 0.46 1.29 16 3 N -0.53 -15.26 3.97 -875.36 -3.47 -18.73 16 4 C 0.05 2.00 4.36 86.30 0.38 2.37 16 5 C 0.22 9.60 2.54 29.85 0.08 9.68 16 6 H 0.05 2.30 7.57 -2.39 -0.02 2.28 16 7 O -0.57 -23.31 7.37 -148.98 -1.10 -24.41 16 8 C -0.56 -31.36 9.37 25.60 0.24 -31.12 16 9 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 10 C 0.03 1.57 5.47 84.65 0.46 2.04 16 11 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 12 Si 0.94 45.44 26.99 68.60 1.85 47.29 16 13 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 14 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 15 H -0.20 -8.94 5.31 99.48 0.53 -8.41 16 16 C 0.12 2.75 1.74 44.17 0.08 2.83 16 17 H 0.05 1.23 6.30 -2.39 -0.02 1.21 16 18 C -0.14 -2.49 8.71 71.98 0.63 -1.86 16 19 C -0.09 -2.27 3.33 -19.86 -0.07 -2.34 16 20 C -0.07 -1.93 9.04 22.26 0.20 -1.73 16 21 C -0.17 -4.65 10.03 22.32 0.22 -4.42 16 22 C 0.07 2.01 7.30 22.38 0.16 2.17 16 23 F -0.15 -4.44 17.27 44.97 0.78 -3.66 16 24 C -0.16 -3.82 10.03 22.31 0.22 -3.59 16 25 C -0.09 -2.13 9.66 22.26 0.22 -1.91 16 26 H 0.04 1.09 6.43 -2.39 -0.02 1.07 16 27 H 0.06 1.17 6.25 -2.39 -0.01 1.16 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.09 2.66 5.25 -2.39 -0.01 2.65 16 30 H 0.09 1.83 6.18 -2.38 -0.01 1.81 16 31 H 0.05 2.20 6.54 -2.39 -0.02 2.19 16 32 H 0.04 1.29 5.87 -2.39 -0.01 1.27 16 33 H 0.36 13.10 8.90 -74.06 -0.66 12.44 16 34 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 35 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.06 1.18 8.09 -2.39 -0.02 1.16 16 37 H 0.07 1.18 6.31 -2.39 -0.02 1.17 16 38 H 0.14 3.85 7.89 -2.91 -0.02 3.83 16 39 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 40 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 41 H 0.15 2.70 7.99 -2.91 -0.02 2.68 16 Total: -1.00 -65.95 323.56 2.51 -63.45 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.20 Total: 24.99 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: 3.95 Total: -29.98 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -3.17 Total: -77.68 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -1.10 Total: -24.41 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.78 Total: -3.66 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.85 Total: 47.29 kcal Total: -65.95 2.51 -63.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929332367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.254 kcal (2) G-P(sol) polarization free energy of solvation -65.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds