Wall clock time and date at job start Tue Mar 31 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46893 * 109.46909 * 2 1 4 4 C 1.46906 * 111.00116 * 61.40594 * 3 2 1 5 5 C 1.52998 * 109.47001 * 72.84385 * 4 3 2 6 6 H 1.08998 * 109.47132 * 53.57974 * 5 4 3 7 7 O 1.42899 * 109.47466 * 293.57438 * 5 4 3 8 8 C 1.50701 * 109.46947 * 173.57266 * 5 4 3 9 9 H 1.08001 * 119.99864 * 0.02562 * 8 5 4 10 10 C 1.37873 * 120.00139 * 179.97438 * 8 5 4 11 11 N 1.31511 * 120.00023 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 120.00123 * 180.02562 * 10 8 5 13 13 H 1.48505 * 109.47241 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47096 * 119.99937 * 12 10 8 15 15 H 1.48499 * 109.47288 * 239.99998 * 12 10 8 16 16 C 1.46898 * 111.00403 * 297.45038 * 3 2 1 17 17 H 1.08998 * 109.47188 * 66.93022 * 16 3 2 18 18 C 1.53001 * 109.47612 * 186.93694 * 16 3 2 19 19 C 1.50700 * 109.46771 * 306.93527 * 16 3 2 20 20 C 1.38250 * 119.97411 * 132.92840 * 19 16 3 21 21 C 1.38199 * 120.02563 * 180.02562 * 20 19 16 22 22 C 1.38451 * 119.97467 * 0.02562 * 21 20 19 23 23 F 1.35105 * 120.02475 * 179.97438 * 22 21 20 24 24 C 1.38461 * 119.95328 * 0.25322 * 22 21 20 25 25 C 1.38202 * 119.96942 * 359.47206 * 24 22 21 26 26 H 1.09006 * 109.47014 * 300.34618 * 1 2 3 27 27 H 1.08989 * 109.47107 * 60.34748 * 1 2 3 28 28 H 1.09001 * 109.46895 * 180.35032 * 1 2 3 29 29 H 1.09002 * 109.46930 * 240.00090 * 2 1 3 30 30 H 1.09001 * 109.46744 * 120.00156 * 2 1 3 31 31 H 1.08999 * 109.46880 * 192.84459 * 4 3 2 32 32 H 1.08998 * 109.47061 * 312.84446 * 4 3 2 33 33 H 0.96700 * 113.99520 * 300.00483 * 7 5 4 34 34 H 0.97001 * 120.00454 * 180.02562 * 11 10 8 35 35 H 1.08995 * 109.47094 * 179.97438 * 18 16 3 36 36 H 1.09004 * 109.46767 * 300.00310 * 18 16 3 37 37 H 1.09007 * 109.46591 * 59.99419 * 18 16 3 38 38 H 1.08000 * 119.98488 * 0.02562 * 20 19 16 39 39 H 1.07999 * 120.00764 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.01765 * 179.74993 * 24 22 21 41 41 H 1.07996 * 119.99040 * 180.29989 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5763 2.1001 1.2042 5 6 2.3622 1.5948 2.4158 6 1 3.4305 1.6675 2.2120 7 8 2.0178 0.2319 2.6724 8 6 2.0225 2.4341 3.6205 9 1 1.3164 3.2464 3.5309 10 6 2.6124 2.1644 4.8371 11 7 3.4718 1.1750 4.9462 12 14 2.1908 3.2044 6.3305 13 1 1.2045 4.2459 5.9460 14 1 1.6093 2.3391 7.3881 15 1 3.4229 3.8545 6.8448 16 6 1.5991 2.0921 -1.2170 17 1 0.5160 2.2144 -1.2102 18 6 2.2675 3.4676 -1.2644 19 6 2.0069 1.2934 -2.4282 20 6 1.0999 1.0742 -3.4483 21 6 1.4726 0.3415 -4.5593 22 6 2.7545 -0.1734 -4.6502 23 9 3.1197 -0.8903 -5.7356 24 6 3.6603 0.0418 -3.6253 25 6 3.2872 0.7796 -2.5178 26 1 -0.3633 0.5192 0.8869 27 1 -0.3633 0.5084 -0.8930 28 1 -0.3633 -1.0277 0.0063 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7513 3.1684 1.0774 32 1 0.5124 1.9223 1.3613 33 1 1.0799 0.0923 2.8621 34 1 3.8866 0.9850 5.8023 35 1 1.9557 3.9920 -2.1677 36 1 1.9726 4.0452 -0.3883 37 1 3.3506 3.3451 -1.2712 38 1 0.0999 1.4756 -3.3770 39 1 0.7640 0.1708 -5.3562 40 1 4.6593 -0.3628 -3.6933 41 1 3.9949 0.9519 -1.7205 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929332368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:57 Heat of formation + Delta-G solvation = -65.819639 kcal Electronic energy + Delta-G solvation = -22611.744162 eV Core-core repulsion = 19213.188404 eV Total energy + Delta-G solvation = -3398.555757 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.90590 -39.79597 -37.67418 -35.14720 -32.38680 -31.95448 -31.14260 -30.32402 -28.52332 -27.23344 -24.81126 -23.49865 -22.78234 -22.18319 -20.62911 -19.03450 -17.64734 -16.98821 -16.38689 -15.91488 -15.60122 -15.23924 -14.82862 -14.60132 -14.46247 -14.04104 -13.84658 -13.47674 -13.05213 -12.94278 -12.73718 -12.64023 -12.36605 -12.20309 -11.88547 -11.47672 -11.23535 -11.14952 -11.00721 -10.97371 -10.90910 -10.71902 -10.35721 -10.19742 -9.88336 -9.08911 -9.02673 -8.56747 -8.50021 -8.11669 -7.53682 -6.00532 -4.18652 1.14072 1.24705 3.25995 3.34682 3.37214 3.58750 4.24985 4.31483 4.48405 4.74268 4.80098 4.87040 5.26374 5.30569 5.31742 5.47721 5.49142 5.57060 5.73417 5.79262 5.86896 5.91087 5.93846 6.06933 6.08612 6.14482 6.20510 6.24843 6.32308 6.39085 6.44796 6.61999 6.67795 6.79971 6.90255 7.05903 7.56149 7.72673 7.77411 7.98537 8.21874 8.85153 9.38072 9.58563 11.03384 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033566 B = 0.003827 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.987036 B = 7315.064230 C = 7399.964805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.033 3.967 3 N -0.520 5.520 4 C 0.023 3.977 5 C 0.239 3.761 6 H 0.063 0.937 7 O -0.558 6.558 8 C -0.572 4.572 9 H 0.054 0.946 10 C 0.081 3.919 11 N -0.857 5.857 12 Si 0.886 3.114 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.112 3.888 17 H 0.044 0.956 18 C -0.142 4.142 19 C -0.073 4.073 20 C -0.092 4.092 21 C -0.157 4.157 22 C 0.086 3.914 23 F -0.146 7.146 24 C -0.156 4.156 25 C -0.062 4.062 26 H 0.060 0.940 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.116 0.884 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.340 0.660 34 H 0.259 0.741 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.169 -0.288 -16.202 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.094 4.094 3 N -0.244 5.244 4 C -0.104 4.104 5 C 0.181 3.819 6 H 0.081 0.919 7 O -0.360 6.360 8 C -0.611 4.611 9 H 0.072 0.928 10 C -0.125 4.125 11 N -0.493 5.493 12 Si 0.714 3.286 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.209 1.209 16 C 0.004 3.996 17 H 0.062 0.938 18 C -0.200 4.200 19 C -0.074 4.074 20 C -0.111 4.111 21 C -0.176 4.176 22 C 0.067 3.933 23 F -0.125 7.125 24 C -0.175 4.175 25 C -0.080 4.080 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.183 0.817 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.852 -0.498 -16.227 16.484 hybrid contribution -1.734 0.599 0.684 1.958 sum -4.586 0.101 -15.544 16.207 Atomic orbital electron populations 1.22381 0.99545 1.01439 1.01191 1.22589 0.92036 0.90549 1.04264 1.62418 1.59094 1.02140 1.00702 1.23216 0.97966 0.98165 0.91015 1.19352 0.95146 0.79461 0.87949 0.91915 1.86538 1.27851 1.29668 1.91990 1.21667 1.27506 1.17027 0.94860 0.92782 1.25008 0.94220 0.94514 0.98804 1.70086 1.26860 1.27702 1.24629 0.86660 0.78335 0.80480 0.83133 1.19791 1.20964 1.20893 1.20585 0.97166 0.93293 0.88557 0.93811 1.21895 1.01772 0.94900 1.01408 1.19947 0.93870 0.98051 0.95515 1.20886 0.99489 0.97843 0.92844 1.21012 0.95093 1.01334 1.00173 1.17731 0.94366 0.96204 0.84982 1.91474 1.92190 1.75978 1.52846 1.21203 1.00034 1.02197 0.94087 1.21033 0.96323 0.94234 0.96395 0.92154 0.93867 0.92895 0.92319 0.86664 0.91117 0.95293 0.81678 0.93087 0.92882 0.91590 0.91601 0.85559 0.85222 0.84940 0.83909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.69 9.27 37.16 0.34 -2.35 16 2 C 0.03 0.54 5.31 -3.82 -0.02 0.52 16 3 N -0.52 -8.64 4.10 -228.04 -0.93 -9.58 16 4 C 0.02 0.45 4.45 -3.82 -0.02 0.43 16 5 C 0.24 5.74 3.02 -27.88 -0.08 5.65 16 6 H 0.06 1.72 8.14 -51.93 -0.42 1.30 16 7 O -0.56 -13.41 9.69 -35.23 -0.34 -13.75 16 8 C -0.57 -15.16 8.76 -34.44 -0.30 -15.46 16 9 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 10 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 11 N -0.86 -24.84 12.84 55.43 0.71 -24.12 16 12 Si 0.89 20.77 29.54 -169.99 -5.02 15.74 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 16 C 0.11 1.56 1.74 -68.86 -0.12 1.44 16 17 H 0.04 0.61 6.53 -51.93 -0.34 0.27 16 18 C -0.14 -1.87 9.02 37.16 0.33 -1.53 16 19 C -0.07 -0.94 3.50 -104.61 -0.37 -1.30 16 20 C -0.09 -1.04 9.67 -39.59 -0.38 -1.43 16 21 C -0.16 -1.75 10.03 -39.52 -0.40 -2.15 16 22 C 0.09 1.06 7.30 -39.42 -0.29 0.77 16 23 F -0.15 -1.85 17.27 2.25 0.04 -1.81 16 24 C -0.16 -1.89 10.03 -39.51 -0.40 -2.29 16 25 C -0.06 -0.80 8.17 -39.59 -0.32 -1.12 16 26 H 0.06 0.93 6.17 -51.93 -0.32 0.61 16 27 H 0.04 0.58 6.63 -51.94 -0.34 0.23 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.92 6.11 -51.93 -0.32 0.60 16 30 H 0.12 2.18 5.28 -51.93 -0.27 1.90 16 31 H 0.07 1.35 5.75 -51.93 -0.30 1.05 16 32 H 0.03 0.55 5.77 -51.93 -0.30 0.25 16 33 H 0.34 7.40 9.04 45.56 0.41 7.81 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.91 6.17 -51.93 -0.32 0.59 16 37 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 38 H 0.13 1.22 7.99 -52.49 -0.42 0.80 16 39 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.14 1.94 7.93 -52.49 -0.42 1.53 16 LS Contribution 328.43 15.07 4.95 4.95 Total: -1.00 -28.49 328.43 -7.72 -36.21 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.01 Total: 9.06 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -2.11 Total: -16.70 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: -0.22 Total: -33.70 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.34 Total: -13.75 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.49 -7.72 -36.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929332368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.607 kcal (2) G-P(sol) polarization free energy of solvation -28.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds