Wall clock time and date at job start Tue Mar 31 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46893 * 109.46909 * 2 1 4 4 C 1.46906 * 111.00116 * 61.40594 * 3 2 1 5 5 C 1.52998 * 109.47001 * 72.84385 * 4 3 2 6 6 H 1.08998 * 109.47132 * 53.57974 * 5 4 3 7 7 O 1.42899 * 109.47466 * 293.57438 * 5 4 3 8 8 C 1.50701 * 109.46947 * 173.57266 * 5 4 3 9 9 H 1.08001 * 119.99864 * 0.02562 * 8 5 4 10 10 C 1.37873 * 120.00139 * 179.97438 * 8 5 4 11 11 N 1.31511 * 120.00023 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 120.00123 * 180.02562 * 10 8 5 13 13 H 1.48505 * 109.47241 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47096 * 119.99937 * 12 10 8 15 15 H 1.48499 * 109.47288 * 239.99998 * 12 10 8 16 16 C 1.46898 * 111.00403 * 297.45038 * 3 2 1 17 17 H 1.08998 * 109.47188 * 66.93022 * 16 3 2 18 18 C 1.53001 * 109.47612 * 186.93694 * 16 3 2 19 19 C 1.50700 * 109.46771 * 306.93527 * 16 3 2 20 20 C 1.38250 * 119.97411 * 132.92840 * 19 16 3 21 21 C 1.38199 * 120.02563 * 180.02562 * 20 19 16 22 22 C 1.38451 * 119.97467 * 0.02562 * 21 20 19 23 23 F 1.35105 * 120.02475 * 179.97438 * 22 21 20 24 24 C 1.38461 * 119.95328 * 0.25322 * 22 21 20 25 25 C 1.38202 * 119.96942 * 359.47206 * 24 22 21 26 26 H 1.09006 * 109.47014 * 300.34618 * 1 2 3 27 27 H 1.08989 * 109.47107 * 60.34748 * 1 2 3 28 28 H 1.09001 * 109.46895 * 180.35032 * 1 2 3 29 29 H 1.09002 * 109.46930 * 240.00090 * 2 1 3 30 30 H 1.09001 * 109.46744 * 120.00156 * 2 1 3 31 31 H 1.08999 * 109.46880 * 192.84459 * 4 3 2 32 32 H 1.08998 * 109.47061 * 312.84446 * 4 3 2 33 33 H 0.96700 * 113.99520 * 300.00483 * 7 5 4 34 34 H 0.97001 * 120.00454 * 180.02562 * 11 10 8 35 35 H 1.08995 * 109.47094 * 179.97438 * 18 16 3 36 36 H 1.09004 * 109.46767 * 300.00310 * 18 16 3 37 37 H 1.09007 * 109.46591 * 59.99419 * 18 16 3 38 38 H 1.08000 * 119.98488 * 0.02562 * 20 19 16 39 39 H 1.07999 * 120.00764 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.01765 * 179.74993 * 24 22 21 41 41 H 1.07996 * 119.99040 * 180.29989 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5763 2.1001 1.2042 5 6 2.3622 1.5948 2.4158 6 1 3.4305 1.6675 2.2120 7 8 2.0178 0.2319 2.6724 8 6 2.0225 2.4341 3.6205 9 1 1.3164 3.2464 3.5309 10 6 2.6124 2.1644 4.8371 11 7 3.4718 1.1750 4.9462 12 14 2.1908 3.2044 6.3305 13 1 1.2045 4.2459 5.9460 14 1 1.6093 2.3391 7.3881 15 1 3.4229 3.8545 6.8448 16 6 1.5991 2.0921 -1.2170 17 1 0.5160 2.2144 -1.2102 18 6 2.2675 3.4676 -1.2644 19 6 2.0069 1.2934 -2.4282 20 6 1.0999 1.0742 -3.4483 21 6 1.4726 0.3415 -4.5593 22 6 2.7545 -0.1734 -4.6502 23 9 3.1197 -0.8903 -5.7356 24 6 3.6603 0.0418 -3.6253 25 6 3.2872 0.7796 -2.5178 26 1 -0.3633 0.5192 0.8869 27 1 -0.3633 0.5084 -0.8930 28 1 -0.3633 -1.0277 0.0063 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7513 3.1684 1.0774 32 1 0.5124 1.9223 1.3613 33 1 1.0799 0.0923 2.8621 34 1 3.8866 0.9850 5.8023 35 1 1.9557 3.9920 -2.1677 36 1 1.9726 4.0452 -0.3883 37 1 3.3506 3.3451 -1.2712 38 1 0.0999 1.4756 -3.3770 39 1 0.7640 0.1708 -5.3562 40 1 4.6593 -0.3628 -3.6933 41 1 3.9949 0.9519 -1.7205 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929332368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:57 Heat of formation + Delta-G solvation = -83.328261 kcal Electronic energy + Delta-G solvation = -22612.503392 eV Core-core repulsion = 19213.188404 eV Total energy + Delta-G solvation = -3399.314988 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.86149 -40.88959 -38.98681 -36.84418 -34.24746 -33.33045 -32.05798 -31.71209 -29.83366 -28.67911 -26.52191 -24.56156 -23.82700 -23.57519 -22.07251 -20.35640 -18.91640 -18.58113 -17.48162 -17.10308 -16.61722 -16.57560 -16.52025 -16.18041 -15.96016 -15.27331 -15.11157 -14.53868 -14.40862 -14.30678 -14.00897 -13.78238 -13.75623 -13.29270 -13.15357 -13.02695 -12.85709 -12.68404 -12.47773 -12.43544 -12.16016 -12.05381 -11.85334 -11.57725 -11.41070 -10.94760 -10.65633 -10.01344 -9.91437 -9.46711 -8.92170 -8.08705 -6.33854 0.18686 0.33667 1.41071 1.43197 1.54226 2.40983 2.63812 3.17287 3.18221 3.32654 3.72631 3.85554 4.01417 4.23170 4.26404 4.32745 4.37079 4.44311 4.54025 4.54222 4.60232 4.65969 4.71546 4.86024 4.94566 5.04498 5.07176 5.14298 5.17221 5.20951 5.33890 5.36736 5.38827 5.53984 5.65312 5.70105 5.85633 5.97208 6.10234 6.40285 6.46503 6.80573 7.38811 7.61450 8.95261 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033566 B = 0.003827 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.987036 B = 7315.064230 C = 7399.964805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.039 3.961 3 N -0.531 5.531 4 C 0.043 3.957 5 C 0.242 3.758 6 H 0.019 0.981 7 O -0.568 6.568 8 C -0.583 4.583 9 H 0.058 0.942 10 C 0.028 3.972 11 N -0.899 5.899 12 Si 0.955 3.045 13 H -0.263 1.263 14 H -0.281 1.281 15 H -0.282 1.282 16 C 0.116 3.884 17 H 0.055 0.945 18 C -0.140 4.140 19 C -0.080 4.080 20 C -0.087 4.087 21 C -0.151 4.151 22 C 0.076 3.924 23 F -0.150 7.150 24 C -0.160 4.160 25 C -0.073 4.073 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.349 0.651 34 H 0.259 0.741 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.141 0.859 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.064 0.437 -17.481 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.088 4.088 3 N -0.255 5.255 4 C -0.084 4.084 5 C 0.184 3.816 6 H 0.037 0.963 7 O -0.372 6.372 8 C -0.621 4.621 9 H 0.077 0.923 10 C -0.175 4.175 11 N -0.536 5.536 12 Si 0.780 3.220 13 H -0.187 1.187 14 H -0.207 1.207 15 H -0.208 1.208 16 C 0.008 3.992 17 H 0.072 0.928 18 C -0.198 4.198 19 C -0.081 4.081 20 C -0.105 4.105 21 C -0.169 4.169 22 C 0.056 3.944 23 F -0.129 7.129 24 C -0.179 4.179 25 C -0.091 4.091 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.193 0.807 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.168 0.832 39 H 0.172 0.828 40 H 0.159 0.841 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.760 0.235 -17.521 18.158 hybrid contribution -1.109 0.332 0.997 1.528 sum -5.869 0.567 -16.524 17.545 Atomic orbital electron populations 1.22278 0.97725 1.02290 1.01357 1.22406 0.93465 0.90016 1.02957 1.62262 1.59824 1.02426 1.00981 1.22773 0.97249 0.98094 0.90319 1.19126 0.93499 0.79397 0.89598 0.96279 1.86506 1.28697 1.29595 1.92358 1.22083 1.27049 1.17153 0.95841 0.92338 1.25837 0.94075 0.95624 1.01932 1.70226 1.28347 1.29701 1.25324 0.85581 0.78147 0.78910 0.79324 1.18689 1.20716 1.20759 1.20599 0.97710 0.93387 0.87477 0.92765 1.21883 1.01092 0.94677 1.02108 1.19883 0.94111 0.98471 0.95625 1.21096 1.00102 0.97247 0.92074 1.21283 0.94881 1.00170 1.00591 1.17913 0.95018 0.96539 0.84884 1.91466 1.92308 1.76128 1.52969 1.21292 1.00696 1.01994 0.93885 1.20939 0.96500 0.95230 0.96477 0.93254 0.92253 0.91750 0.91688 0.89772 0.90989 0.94628 0.80652 0.93183 0.90527 0.92533 0.92664 0.83180 0.82804 0.84072 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.78 9.27 71.98 0.67 -4.11 16 2 C 0.04 1.25 5.31 86.31 0.46 1.71 16 3 N -0.53 -17.53 4.10 -875.37 -3.58 -21.11 16 4 C 0.04 1.66 4.45 86.30 0.38 2.04 16 5 C 0.24 11.94 3.02 29.85 0.09 12.03 16 6 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 7 O -0.57 -28.08 9.69 -148.98 -1.44 -29.53 16 8 C -0.58 -31.18 8.76 25.60 0.22 -30.95 16 9 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 10 C 0.03 1.52 5.40 84.65 0.46 1.98 16 11 N -0.90 -53.30 12.84 21.45 0.28 -53.03 16 12 Si 0.96 42.79 29.54 68.60 2.03 44.82 16 13 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 14 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 16 C 0.12 3.03 1.74 44.17 0.08 3.10 16 17 H 0.05 1.33 6.53 -2.39 -0.02 1.32 16 18 C -0.14 -3.50 9.02 71.98 0.65 -2.85 16 19 C -0.08 -1.90 3.50 -19.86 -0.07 -1.97 16 20 C -0.09 -1.68 9.67 22.26 0.22 -1.47 16 21 C -0.15 -2.88 10.03 22.31 0.22 -2.66 16 22 C 0.08 1.71 7.30 22.37 0.16 1.87 16 23 F -0.15 -3.54 17.27 44.97 0.78 -2.77 16 24 C -0.16 -3.72 10.03 22.31 0.22 -3.49 16 25 C -0.07 -1.84 8.17 22.26 0.18 -1.66 16 26 H 0.05 1.44 6.17 -2.38 -0.01 1.42 16 27 H 0.06 1.40 6.63 -2.39 -0.02 1.38 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 1.99 6.11 -2.39 -0.01 1.97 16 30 H 0.08 3.25 5.28 -2.39 -0.01 3.24 16 31 H 0.07 2.73 5.75 -2.39 -0.01 2.71 16 32 H 0.04 1.32 5.77 -2.39 -0.01 1.31 16 33 H 0.35 15.48 9.04 -74.06 -0.67 14.81 16 34 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.51 6.17 -2.38 -0.01 1.49 16 37 H 0.05 1.48 8.05 -2.38 -0.02 1.46 16 38 H 0.15 2.20 7.99 -2.91 -0.02 2.18 16 39 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 41 H 0.13 3.57 7.93 -2.91 -0.02 3.55 16 Total: -1.00 -61.56 328.43 2.37 -59.19 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.37 Total: 28.85 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 3.95 Total: -26.43 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -3.31 Total: -74.14 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -1.44 Total: -29.53 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.77 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -61.56 2.37 -59.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929332368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.136 kcal (2) G-P(sol) polarization free energy of solvation -61.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds