Wall clock time and date at job start Tue Mar 31 2020 05:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47263 * 2 1 4 4 N 1.46897 * 109.46887 * 120.00098 * 2 1 3 5 5 C 1.46894 * 111.00020 * 293.29141 * 4 2 1 6 6 C 1.50700 * 109.47145 * 160.17719 * 5 4 2 7 7 C 1.38267 * 119.98717 * 274.64598 * 6 5 4 8 8 C 1.38229 * 120.04878 * 179.72135 * 7 6 5 9 9 C 1.38218 * 120.02677 * 0.55316 * 8 7 6 10 10 C 1.38435 * 119.97423 * 359.72596 * 9 8 7 11 11 F 1.35106 * 120.02574 * 180.02562 * 10 9 8 12 12 C 1.38184 * 119.98939 * 94.92260 * 6 5 4 13 13 C 1.46903 * 110.99619 * 169.33881 * 4 2 1 14 14 C 1.53001 * 109.47211 * 293.95210 * 13 4 2 15 15 H 1.08999 * 109.46783 * 60.00250 * 14 13 4 16 16 O 1.42897 * 109.47153 * 300.00080 * 14 13 4 17 17 C 1.50704 * 109.47030 * 180.02562 * 14 13 4 18 18 H 1.08002 * 120.00057 * 0.02562 * 17 14 13 19 19 C 1.37879 * 119.99889 * 179.97438 * 17 14 13 20 20 N 1.31513 * 119.99871 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00065 * 179.97438 * 19 17 14 22 22 H 1.48499 * 109.47164 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47083 * 300.00081 * 21 19 17 24 24 H 1.48502 * 109.46918 * 59.99910 * 21 19 17 25 25 H 1.09005 * 109.46999 * 300.29246 * 1 2 3 26 26 H 1.09004 * 109.47088 * 60.29071 * 1 2 3 27 27 H 1.08993 * 109.47770 * 180.29290 * 1 2 3 28 28 H 1.09005 * 109.46944 * 240.00048 * 2 1 3 29 29 H 1.09000 * 109.47042 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47185 * 300.00124 * 3 2 1 31 31 H 1.08993 * 109.47391 * 59.99854 * 3 2 1 32 32 H 1.09001 * 109.47362 * 280.17282 * 5 4 2 33 33 H 1.08996 * 109.47576 * 40.17447 * 5 4 2 34 34 H 1.07998 * 119.97571 * 359.97438 * 7 6 5 35 35 H 1.08005 * 119.98275 * 180.27638 * 8 7 6 36 36 H 1.07996 * 120.01308 * 179.73943 * 9 8 7 37 37 H 1.08002 * 120.00868 * 359.97438 * 12 6 5 38 38 H 1.09003 * 109.46827 * 173.95143 * 13 4 2 39 39 H 1.09001 * 109.47419 * 53.95304 * 13 4 2 40 40 H 0.96701 * 114.00392 * 299.99924 * 16 14 13 41 41 H 0.97005 * 120.00014 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.6838 0.0598 2.4156 6 6 1.7462 -0.8594 3.6082 7 6 0.6473 -1.6270 3.9473 8 6 0.7051 -2.4748 5.0375 9 6 1.8578 -2.5477 5.7967 10 6 2.9567 -1.7754 5.4615 11 9 4.0842 -1.8462 6.2026 12 6 2.8997 -0.9306 4.3657 13 6 3.4658 -0.9358 1.1133 14 6 3.7501 -1.9243 -0.0193 15 1 3.3949 -1.5085 -0.9622 16 8 3.0747 -3.1560 0.2427 17 6 5.2337 -2.1743 -0.1072 18 1 5.9064 -1.6781 0.5766 19 6 5.7321 -3.0374 -1.0601 20 7 4.9129 -3.6420 -1.8924 21 14 7.5710 -3.3467 -1.1695 22 1 7.8470 -4.3063 -2.2687 23 1 8.2729 -2.0669 -1.4425 24 1 8.0551 -3.9125 0.1153 25 1 -0.3633 0.5184 0.8874 26 1 -0.3633 0.5093 -0.8926 27 1 -0.3634 -1.0275 0.0053 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8899 32 1 2.3960 0.8744 2.5472 33 1 0.6775 0.4683 2.3240 34 1 -0.2555 -1.5671 3.3576 35 1 -0.1525 -3.0772 5.2988 36 1 1.9012 -3.2071 6.6509 37 1 3.7565 -0.3279 4.1030 38 1 3.8210 -1.3515 2.0562 39 1 3.9810 0.0037 0.9134 40 1 3.3418 -3.5833 1.0680 41 1 3.9579 -3.4810 -1.8358 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929341599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:09 Heat of formation + Delta-G solvation = -76.891026 kcal Electronic energy + Delta-G solvation = -22801.642243 eV Core-core repulsion = 19402.606395 eV Total energy + Delta-G solvation = -3399.035849 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.78744 -39.50308 -37.95243 -35.50296 -32.59430 -32.02491 -30.67083 -30.46407 -28.07979 -26.95994 -25.53559 -23.57204 -22.68703 -21.69784 -21.22926 -18.92937 -17.39854 -17.06619 -16.28879 -16.12444 -15.64628 -15.47004 -15.15262 -14.75025 -14.02475 -13.86527 -13.74297 -13.60055 -13.32969 -12.94605 -12.77946 -12.59357 -12.27230 -12.20206 -11.79329 -11.69145 -11.54350 -11.28573 -11.05077 -10.92395 -10.78941 -10.55894 -10.41626 -10.09734 -9.93962 -9.13565 -8.90838 -8.57073 -8.43365 -7.99104 -7.72353 -6.32222 -4.15345 1.24372 1.28029 3.43077 3.44601 3.60654 3.63609 4.27447 4.42474 4.56782 4.77878 4.81208 5.07027 5.13954 5.26400 5.34127 5.37854 5.39981 5.49135 5.57658 5.61177 5.73831 5.87247 5.91483 5.99291 6.01808 6.12373 6.13467 6.16566 6.21075 6.32767 6.34942 6.45922 6.55729 6.63739 6.73783 6.96772 7.40567 7.53209 7.66477 8.06559 8.38508 8.89278 9.26253 9.70732 11.07865 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.006168 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.661490 B = 4538.267610 C = 5882.219575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.073 3.927 3 C -0.186 4.186 4 N -0.513 5.513 5 C 0.084 3.916 6 C -0.035 4.035 7 C -0.108 4.108 8 C -0.093 4.093 9 C -0.160 4.160 10 C 0.096 3.904 11 F -0.143 7.143 12 C -0.146 4.146 13 C 0.033 3.967 14 C 0.223 3.777 15 H 0.047 0.953 16 O -0.570 6.570 17 C -0.651 4.651 18 H 0.046 0.954 19 C 0.036 3.964 20 N -0.892 5.892 21 Si 1.064 2.936 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.288 1.288 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.066 0.934 39 H 0.030 0.970 40 H 0.350 0.650 41 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.512 7.462 11.552 16.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.035 4.035 3 C -0.244 4.244 4 N -0.237 5.237 5 C -0.043 4.043 6 C -0.036 4.036 7 C -0.126 4.126 8 C -0.111 4.111 9 C -0.180 4.180 10 C 0.077 3.923 11 F -0.122 7.122 12 C -0.166 4.166 13 C -0.094 4.094 14 C 0.165 3.835 15 H 0.064 0.936 16 O -0.373 6.373 17 C -0.690 4.690 18 H 0.064 0.936 19 C -0.173 4.173 20 N -0.527 5.527 21 Si 0.892 3.108 22 H -0.207 1.207 23 H -0.215 1.215 24 H -0.214 1.214 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.195 0.805 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.861 6.323 10.170 14.897 hybrid contribution -0.016 1.594 1.545 2.220 sum -8.876 7.917 11.715 16.695 Atomic orbital electron populations 1.21834 0.94955 1.02289 1.00650 1.21737 0.95125 0.92002 0.94647 1.22493 1.02033 0.98370 1.01554 1.62245 1.16466 1.45160 0.99790 1.21123 1.01393 0.93086 0.88745 1.19662 0.92488 0.96708 0.94713 1.21038 0.98851 0.96056 0.96678 1.20961 0.97236 0.98123 0.94810 1.21069 0.93135 1.01368 1.02378 1.17662 0.83117 0.99287 0.92223 1.91488 1.49666 1.95397 1.75658 1.21074 0.99412 1.00811 0.95288 1.23010 0.84823 0.99499 1.02064 1.19460 0.91409 0.81160 0.91433 0.93576 1.86450 1.67977 1.38782 1.44128 1.22442 0.92425 1.32482 1.21601 0.93550 1.25726 1.06420 0.92839 0.92317 1.70630 1.06700 1.39601 1.35755 0.83642 0.74479 0.76351 0.76297 1.20716 1.21540 1.21439 0.93239 0.92760 0.91742 0.89037 0.92254 0.92433 0.92971 0.94153 0.89864 0.85463 0.85281 0.85189 0.85206 0.91538 0.95194 0.80528 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.17 37.16 0.34 -1.47 16 2 C 0.07 1.16 2.79 -67.72 -0.19 0.97 16 3 C -0.19 -2.58 8.52 37.16 0.32 -2.27 16 4 N -0.51 -8.68 4.23 -228.09 -0.97 -9.65 16 5 C 0.08 1.17 3.70 -4.98 -0.02 1.16 16 6 C -0.03 -0.49 5.05 -104.63 -0.53 -1.02 16 7 C -0.11 -1.35 9.72 -39.57 -0.38 -1.74 16 8 C -0.09 -1.07 10.04 -39.59 -0.40 -1.47 16 9 C -0.16 -1.98 10.03 -39.52 -0.40 -2.38 16 10 C 0.10 1.38 7.30 -39.42 -0.29 1.09 16 11 F -0.14 -2.17 17.27 2.25 0.04 -2.13 16 12 C -0.15 -2.14 8.36 -39.51 -0.33 -2.47 16 13 C 0.03 0.68 4.27 -3.82 -0.02 0.66 16 14 C 0.22 5.55 2.32 -27.88 -0.06 5.49 16 15 H 0.05 1.24 6.22 -51.93 -0.32 0.92 16 16 O -0.57 -14.56 11.88 -35.23 -0.42 -14.98 16 17 C -0.65 -18.15 8.76 -34.44 -0.30 -18.45 16 18 H 0.05 1.28 7.74 -52.49 -0.41 0.88 16 19 C 0.04 1.03 5.40 -17.82 -0.10 0.93 16 20 N -0.89 -27.34 13.53 55.43 0.75 -26.59 16 21 Si 1.06 25.27 29.90 -169.99 -5.08 20.19 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 25 H 0.05 0.56 6.29 -51.93 -0.33 0.24 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.09 1.73 6.06 -51.93 -0.31 1.41 16 29 H 0.06 0.92 6.60 -51.93 -0.34 0.58 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.64 6.74 -51.93 -0.35 0.29 16 32 H 0.04 0.56 7.24 -51.93 -0.38 0.18 16 33 H 0.08 1.01 5.86 -51.93 -0.30 0.71 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.13 1.88 7.95 -52.49 -0.42 1.46 16 38 H 0.07 1.38 6.28 -51.93 -0.33 1.05 16 39 H 0.03 0.61 6.43 -51.93 -0.33 0.28 16 40 H 0.35 8.42 9.04 45.56 0.41 8.83 16 41 H 0.28 8.86 6.47 -40.82 -0.26 8.60 16 LS Contribution 331.10 15.07 4.99 4.99 Total: -1.00 -30.71 331.10 -8.05 -38.76 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -5.01 Total: 10.38 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -2.35 Total: -20.97 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.22 Total: -36.24 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.42 Total: -14.98 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.08 Total: 20.19 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.71 -8.05 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929341599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.128 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds