Wall clock time and date at job start Tue Mar 31 2020 05:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47227 * 2 1 4 4 N 1.46897 * 109.47356 * 120.00788 * 2 1 3 5 5 C 1.46894 * 111.00491 * 169.70134 * 4 2 1 6 6 C 1.50703 * 109.46887 * 293.95316 * 5 4 2 7 7 C 1.38220 * 120.01441 * 104.99761 * 6 5 4 8 8 C 1.38225 * 120.02543 * 180.27181 * 7 6 5 9 9 C 1.38269 * 120.04905 * 359.49460 * 8 7 6 10 10 C 1.38181 * 120.02484 * 0.50704 * 9 8 7 11 11 C 1.38433 * 120.00828 * 285.01753 * 6 5 4 12 12 F 1.35096 * 120.02902 * 359.95865 * 11 6 5 13 13 C 1.46903 * 110.99429 * 293.65207 * 4 2 1 14 14 C 1.53008 * 109.47007 * 160.18535 * 13 4 2 15 15 H 1.09001 * 109.47297 * 54.85252 * 14 13 4 16 16 O 1.42902 * 109.47031 * 294.85425 * 14 13 4 17 17 C 1.50703 * 109.47074 * 174.85467 * 14 13 4 18 18 H 1.07999 * 120.00080 * 359.97438 * 17 14 13 19 19 C 1.37875 * 119.99677 * 180.02562 * 17 14 13 20 20 N 1.31518 * 119.99976 * 179.97438 * 19 17 14 21 21 Si 1.86803 * 120.00205 * 359.97438 * 19 17 14 22 22 H 1.48492 * 109.47148 * 89.99962 * 21 19 17 23 23 H 1.48496 * 109.47096 * 210.00009 * 21 19 17 24 24 H 1.48499 * 109.47163 * 329.99637 * 21 19 17 25 25 H 1.09000 * 109.46950 * 306.47686 * 1 2 3 26 26 H 1.08997 * 109.47249 * 66.47667 * 1 2 3 27 27 H 1.08994 * 109.46996 * 186.48061 * 1 2 3 28 28 H 1.09011 * 109.46953 * 240.00268 * 2 1 3 29 29 H 1.09001 * 109.46866 * 179.97438 * 3 2 1 30 30 H 1.08991 * 109.47523 * 300.00200 * 3 2 1 31 31 H 1.08996 * 109.46682 * 60.00665 * 3 2 1 32 32 H 1.09000 * 109.47700 * 173.95030 * 5 4 2 33 33 H 1.09005 * 109.47442 * 53.94930 * 5 4 2 34 34 H 1.07998 * 119.99027 * 0.02562 * 7 6 5 35 35 H 1.07995 * 119.97498 * 179.72260 * 8 7 6 36 36 H 1.08006 * 119.98858 * 180.24866 * 9 8 7 37 37 H 1.08000 * 120.01034 * 179.77079 * 10 9 8 38 38 H 1.08997 * 109.47345 * 280.18069 * 13 4 2 39 39 H 1.09001 * 109.47387 * 40.18408 * 13 4 2 40 40 H 0.96701 * 113.99819 * 295.08779 * 16 14 13 41 41 H 0.96995 * 120.00158 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 3.4673 -0.9283 1.1171 6 6 3.7557 -1.8980 0.0001 7 6 4.2924 -1.4427 -1.1895 8 6 4.5518 -2.3312 -2.2161 9 6 4.2845 -3.6777 -2.0506 10 6 3.7479 -4.1351 -0.8622 11 6 3.4828 -3.2451 0.1651 12 9 2.9587 -3.6913 1.3276 13 6 1.6764 0.0554 2.4161 14 6 1.7413 -0.8801 3.6252 15 1 2.7221 -1.3538 3.6659 16 8 0.7319 -1.8845 3.5049 17 6 1.5134 -0.0874 4.8865 18 1 1.3402 0.9772 4.8313 19 6 1.5272 -0.7211 6.1109 20 7 1.3289 -0.0293 7.2117 21 14 1.8276 -2.5624 6.2063 22 1 3.2843 -2.8202 6.3351 23 1 1.1201 -3.1188 7.3874 24 1 1.3171 -3.2118 4.9723 25 1 -0.3633 0.6110 0.8264 26 1 -0.3633 0.4101 -0.9422 27 1 -0.3633 -1.0210 0.1160 28 1 1.8934 -0.5138 -0.8901 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9564 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 3.8220 -1.3442 2.0601 33 1 3.9784 0.0144 0.9208 34 1 4.5055 -0.3919 -1.3184 35 1 4.9669 -1.9739 -3.1469 36 1 4.4913 -4.3716 -2.8520 37 1 3.5358 -5.1863 -0.7345 38 1 2.3839 0.8735 2.5515 39 1 0.6681 0.4587 2.3224 40 1 -0.1712 -1.5405 3.5385 41 1 1.3383 -0.4752 8.0730 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929379475.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:11 Heat of formation + Delta-G solvation = -64.048367 kcal Electronic energy + Delta-G solvation = -23164.176722 eV Core-core repulsion = 19765.697773 eV Total energy + Delta-G solvation = -3398.478949 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.46271 -39.44022 -37.98521 -35.51246 -32.64278 -32.16115 -30.94631 -30.33827 -28.22766 -27.03545 -25.69609 -24.04480 -22.67769 -21.55289 -20.81729 -19.01998 -17.33196 -17.09212 -16.29647 -15.99190 -15.60674 -15.14700 -14.79414 -14.57093 -14.42300 -14.08482 -13.66167 -13.53300 -13.40262 -13.05401 -12.66846 -12.62257 -12.29093 -12.19395 -12.00793 -11.65653 -11.52035 -11.31592 -11.02579 -10.92419 -10.88462 -10.69352 -10.42496 -10.13163 -9.82088 -9.02008 -8.89378 -8.56823 -8.52680 -8.19414 -7.65420 -6.08740 -4.19636 1.19093 1.23474 3.45033 3.54614 3.57565 3.85169 4.37692 4.44451 4.60224 4.73885 4.79999 4.93356 5.11211 5.18175 5.27397 5.29099 5.35885 5.51937 5.55940 5.72112 5.78389 5.86042 5.90975 5.95807 6.05272 6.10147 6.11930 6.20245 6.22365 6.34107 6.35077 6.40877 6.42386 6.55118 6.74708 6.95072 7.34664 7.44801 7.65951 7.76532 8.33842 8.88924 9.22209 9.57164 11.01821 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018652 B = 0.006122 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.793562 B = 4572.382676 C = 5497.052862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.073 3.927 3 C -0.186 4.186 4 N -0.515 5.515 5 C 0.089 3.911 6 C -0.107 4.107 7 C -0.089 4.089 8 C -0.139 4.139 9 C -0.097 4.097 10 C -0.163 4.163 11 C 0.129 3.871 12 F -0.120 7.120 13 C 0.040 3.960 14 C 0.205 3.795 15 H 0.050 0.950 16 O -0.568 6.568 17 C -0.566 4.566 18 H 0.070 0.930 19 C 0.084 3.916 20 N -0.895 5.895 21 Si 0.866 3.134 22 H -0.289 1.289 23 H -0.297 1.297 24 H -0.212 1.212 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.035 0.965 39 H 0.073 0.927 40 H 0.352 0.648 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.566 -3.134 -20.037 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.036 4.036 3 C -0.245 4.245 4 N -0.238 5.238 5 C -0.038 4.038 6 C -0.108 4.108 7 C -0.108 4.108 8 C -0.157 4.157 9 C -0.115 4.115 10 C -0.182 4.182 11 C 0.109 3.891 12 F -0.098 7.098 13 C -0.087 4.087 14 C 0.147 3.853 15 H 0.067 0.933 16 O -0.372 6.372 17 C -0.603 4.603 18 H 0.088 0.912 19 C -0.120 4.120 20 N -0.532 5.532 21 Si 0.693 3.307 22 H -0.215 1.215 23 H -0.224 1.224 24 H -0.134 1.134 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.197 0.803 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.807 -3.997 -19.816 20.779 hybrid contribution 0.135 0.408 0.506 0.664 sum 4.942 -3.589 -19.310 20.253 Atomic orbital electron populations 1.21809 0.94521 1.02644 1.00827 1.21709 0.95870 0.91932 0.94053 1.22492 1.01054 0.98668 1.02257 1.62299 1.11293 1.48103 1.02129 1.21014 0.90117 0.95868 0.96811 1.19988 1.00765 0.93122 0.96920 1.20949 0.98009 0.99842 0.92000 1.21086 1.02078 0.93398 0.99174 1.20929 0.98202 0.95795 0.96589 1.21177 1.03303 1.00035 0.93687 1.17598 0.96522 0.92058 0.82927 1.91614 1.83328 1.89417 1.45444 1.22888 1.00296 0.95813 0.89736 1.19662 0.88945 0.86120 0.90606 0.93266 1.86682 1.17001 1.37429 1.96100 1.21549 1.52150 0.96512 0.90139 0.91202 1.24970 0.92685 0.99067 0.95250 1.69961 1.48390 1.36769 0.98109 0.87093 0.77959 0.86165 0.79503 1.21548 1.22405 1.13379 0.92436 0.93125 0.91711 0.90707 0.92993 0.92693 0.91938 0.89260 0.93743 0.85629 0.85809 0.85542 0.85059 0.94705 0.90906 0.80305 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.02 37.16 0.34 -1.57 16 2 C 0.07 1.03 2.79 -67.71 -0.19 0.84 16 3 C -0.19 -2.37 8.53 37.16 0.32 -2.05 16 4 N -0.51 -8.76 4.32 -228.07 -0.99 -9.74 16 5 C 0.09 1.43 4.49 -4.98 -0.02 1.41 16 6 C -0.11 -1.53 4.45 -104.56 -0.47 -1.99 16 7 C -0.09 -1.02 8.82 -39.59 -0.35 -1.37 16 8 C -0.14 -1.37 10.04 -39.57 -0.40 -1.76 16 9 C -0.10 -0.97 10.04 -39.59 -0.40 -1.37 16 10 C -0.16 -2.00 10.03 -39.51 -0.40 -2.40 16 11 C 0.13 1.98 7.25 -39.42 -0.29 1.69 16 12 F -0.12 -2.25 16.76 2.25 0.04 -2.21 16 13 C 0.04 0.77 3.17 -3.82 -0.01 0.76 16 14 C 0.20 4.84 2.41 -27.88 -0.07 4.77 16 15 H 0.05 1.24 6.09 -51.93 -0.32 0.92 16 16 O -0.57 -13.38 10.10 -35.23 -0.36 -13.74 16 17 C -0.57 -15.75 9.30 -34.44 -0.32 -16.07 16 18 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 19 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 20 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 21 Si 0.87 22.41 26.99 -169.99 -4.59 17.82 16 22 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 23 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 24 H -0.21 -5.43 5.31 56.52 0.30 -5.13 16 25 H 0.06 0.82 6.52 -51.93 -0.34 0.48 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.03 6.35 -51.92 -0.33 0.70 16 29 H 0.05 0.64 6.59 -51.93 -0.34 0.29 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.88 6.76 -51.93 -0.35 0.53 16 32 H 0.09 1.63 6.51 -51.93 -0.34 1.30 16 33 H 0.04 0.65 6.22 -51.93 -0.32 0.32 16 34 H 0.13 1.22 8.00 -52.49 -0.42 0.80 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.03 0.69 7.33 -51.93 -0.38 0.31 16 39 H 0.07 1.40 5.98 -51.93 -0.31 1.09 16 40 H 0.35 7.50 9.02 45.56 0.41 7.91 16 41 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 327.73 15.07 4.94 4.94 Total: -1.00 -31.81 327.73 -7.76 -39.57 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.23 Total: 6.90 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -2.35 Total: -16.73 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: -0.21 Total: -36.54 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.36 Total: -13.74 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.59 Total: 17.82 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.81 -7.76 -39.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929379475.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.482 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds