Wall clock time and date at job start Tue Mar 31 2020 05:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47227 * 2 1 4 4 N 1.46897 * 109.47356 * 120.00788 * 2 1 3 5 5 C 1.46894 * 111.00491 * 169.70134 * 4 2 1 6 6 C 1.50703 * 109.46887 * 293.95316 * 5 4 2 7 7 C 1.38220 * 120.01441 * 104.99761 * 6 5 4 8 8 C 1.38225 * 120.02543 * 180.27181 * 7 6 5 9 9 C 1.38269 * 120.04905 * 359.49460 * 8 7 6 10 10 C 1.38181 * 120.02484 * 0.50704 * 9 8 7 11 11 C 1.38433 * 120.00828 * 285.01753 * 6 5 4 12 12 F 1.35096 * 120.02902 * 359.95865 * 11 6 5 13 13 C 1.46903 * 110.99429 * 293.65207 * 4 2 1 14 14 C 1.53008 * 109.47007 * 160.18535 * 13 4 2 15 15 H 1.09001 * 109.47297 * 54.85252 * 14 13 4 16 16 O 1.42902 * 109.47031 * 294.85425 * 14 13 4 17 17 C 1.50703 * 109.47074 * 174.85467 * 14 13 4 18 18 H 1.07999 * 120.00080 * 359.97438 * 17 14 13 19 19 C 1.37875 * 119.99677 * 180.02562 * 17 14 13 20 20 N 1.31518 * 119.99976 * 179.97438 * 19 17 14 21 21 Si 1.86803 * 120.00205 * 359.97438 * 19 17 14 22 22 H 1.48492 * 109.47148 * 89.99962 * 21 19 17 23 23 H 1.48496 * 109.47096 * 210.00009 * 21 19 17 24 24 H 1.48499 * 109.47163 * 329.99637 * 21 19 17 25 25 H 1.09000 * 109.46950 * 306.47686 * 1 2 3 26 26 H 1.08997 * 109.47249 * 66.47667 * 1 2 3 27 27 H 1.08994 * 109.46996 * 186.48061 * 1 2 3 28 28 H 1.09011 * 109.46953 * 240.00268 * 2 1 3 29 29 H 1.09001 * 109.46866 * 179.97438 * 3 2 1 30 30 H 1.08991 * 109.47523 * 300.00200 * 3 2 1 31 31 H 1.08996 * 109.46682 * 60.00665 * 3 2 1 32 32 H 1.09000 * 109.47700 * 173.95030 * 5 4 2 33 33 H 1.09005 * 109.47442 * 53.94930 * 5 4 2 34 34 H 1.07998 * 119.99027 * 0.02562 * 7 6 5 35 35 H 1.07995 * 119.97498 * 179.72260 * 8 7 6 36 36 H 1.08006 * 119.98858 * 180.24866 * 9 8 7 37 37 H 1.08000 * 120.01034 * 179.77079 * 10 9 8 38 38 H 1.08997 * 109.47345 * 280.18069 * 13 4 2 39 39 H 1.09001 * 109.47387 * 40.18408 * 13 4 2 40 40 H 0.96701 * 113.99819 * 295.08779 * 16 14 13 41 41 H 0.96995 * 120.00158 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 3.4673 -0.9283 1.1171 6 6 3.7557 -1.8980 0.0001 7 6 4.2924 -1.4427 -1.1895 8 6 4.5518 -2.3312 -2.2161 9 6 4.2845 -3.6777 -2.0506 10 6 3.7479 -4.1351 -0.8622 11 6 3.4828 -3.2451 0.1651 12 9 2.9587 -3.6913 1.3276 13 6 1.6764 0.0554 2.4161 14 6 1.7413 -0.8801 3.6252 15 1 2.7221 -1.3538 3.6659 16 8 0.7319 -1.8845 3.5049 17 6 1.5134 -0.0874 4.8865 18 1 1.3402 0.9772 4.8313 19 6 1.5272 -0.7211 6.1109 20 7 1.3289 -0.0293 7.2117 21 14 1.8276 -2.5624 6.2063 22 1 3.2843 -2.8202 6.3351 23 1 1.1201 -3.1188 7.3874 24 1 1.3171 -3.2118 4.9723 25 1 -0.3633 0.6110 0.8264 26 1 -0.3633 0.4101 -0.9422 27 1 -0.3633 -1.0210 0.1160 28 1 1.8934 -0.5138 -0.8901 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9564 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 3.8220 -1.3442 2.0601 33 1 3.9784 0.0144 0.9208 34 1 4.5055 -0.3919 -1.3184 35 1 4.9669 -1.9739 -3.1469 36 1 4.4913 -4.3716 -2.8520 37 1 3.5358 -5.1863 -0.7345 38 1 2.3839 0.8735 2.5515 39 1 0.6681 0.4587 2.3224 40 1 -0.1712 -1.5405 3.5385 41 1 1.3383 -0.4752 8.0730 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929379475.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:11 Heat of formation + Delta-G solvation = -86.068651 kcal Electronic energy + Delta-G solvation = -23165.131593 eV Core-core repulsion = 19765.697773 eV Total energy + Delta-G solvation = -3399.433821 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.68412 -40.54289 -39.17780 -37.31941 -34.40686 -33.69078 -32.22494 -31.31942 -29.89071 -28.12786 -27.20654 -25.54415 -23.60135 -22.62717 -22.54238 -20.40419 -19.13623 -18.34320 -17.45128 -17.11785 -16.86958 -16.81962 -16.38345 -15.97225 -15.80250 -15.42447 -15.11504 -14.93534 -14.72522 -14.56646 -14.05460 -13.78333 -13.57047 -13.45778 -13.17245 -13.06775 -12.97388 -12.68530 -12.57978 -12.33875 -12.20790 -12.06655 -11.79416 -11.68956 -11.48705 -11.02718 -10.82499 -10.11481 -9.86506 -9.51299 -9.02961 -8.37861 -6.50815 0.28166 0.32804 1.35162 1.40904 1.74278 2.41956 2.65313 3.01048 3.12962 3.49398 3.71422 3.84401 4.00639 4.10437 4.15486 4.19074 4.29290 4.37593 4.44719 4.47231 4.54137 4.63093 4.68907 4.77937 4.86595 4.97100 5.01598 5.05150 5.08126 5.21996 5.32568 5.35244 5.41237 5.46667 5.47065 5.51757 5.53248 6.03667 6.07397 6.19648 6.35453 6.61943 7.23542 7.39678 8.76270 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018652 B = 0.006122 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.793562 B = 4572.382676 C = 5497.052862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.074 3.926 3 C -0.180 4.180 4 N -0.526 5.526 5 C 0.092 3.908 6 C -0.122 4.122 7 C -0.089 4.089 8 C -0.126 4.126 9 C -0.088 4.088 10 C -0.167 4.167 11 C 0.086 3.914 12 F -0.153 7.153 13 C 0.058 3.942 14 C 0.213 3.787 15 H 0.035 0.965 16 O -0.572 6.572 17 C -0.563 4.563 18 H 0.040 0.960 19 C 0.035 3.965 20 N -0.937 5.937 21 Si 0.929 3.071 22 H -0.290 1.290 23 H -0.294 1.294 24 H -0.210 1.210 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.146 0.854 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.141 0.859 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.362 0.638 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.347 -3.693 -23.761 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.034 4.034 3 C -0.238 4.238 4 N -0.249 5.249 5 C -0.036 4.036 6 C -0.123 4.123 7 C -0.107 4.107 8 C -0.144 4.144 9 C -0.106 4.106 10 C -0.186 4.186 11 C 0.067 3.933 12 F -0.132 7.132 13 C -0.070 4.070 14 C 0.154 3.846 15 H 0.052 0.948 16 O -0.378 6.378 17 C -0.601 4.601 18 H 0.058 0.942 19 C -0.165 4.165 20 N -0.576 5.576 21 Si 0.754 3.246 22 H -0.217 1.217 23 H -0.221 1.221 24 H -0.132 1.132 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.163 0.837 35 H 0.179 0.821 36 H 0.180 0.820 37 H 0.159 0.841 38 H 0.046 0.954 39 H 0.093 0.907 40 H 0.209 0.791 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.583 -4.552 -23.563 24.640 hybrid contribution -0.080 0.619 1.537 1.659 sum 5.503 -3.934 -22.026 23.042 Atomic orbital electron populations 1.21797 0.94188 1.01672 1.01856 1.21791 0.96099 0.92683 0.92818 1.22421 1.01343 0.97488 1.02570 1.62185 1.12342 1.48269 1.02110 1.20923 0.89469 0.96862 0.96313 1.19910 1.02558 0.92299 0.97549 1.21197 0.97115 1.01285 0.91107 1.21544 1.00092 0.92942 0.99797 1.21384 0.96212 0.96759 0.96232 1.21409 1.03219 1.00212 0.93766 1.18083 0.98910 0.93339 0.82979 1.91519 1.84322 1.89833 1.47475 1.22471 1.00326 0.94518 0.89702 1.19445 0.88230 0.86118 0.90763 0.94751 1.86626 1.17670 1.37411 1.96076 1.21857 1.50737 0.95551 0.91951 0.94163 1.25711 0.92808 1.02853 0.95094 1.70065 1.50380 1.38420 0.98755 0.86126 0.77518 0.81588 0.79339 1.21709 1.22095 1.13163 0.93557 0.90383 0.93186 0.89537 0.92474 0.90231 0.93724 0.92717 0.92353 0.83670 0.82081 0.81982 0.84144 0.95432 0.90728 0.79120 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.02 71.98 0.65 -2.87 16 2 C 0.07 1.96 2.79 44.92 0.13 2.09 16 3 C -0.18 -4.18 8.53 71.98 0.61 -3.56 16 4 N -0.53 -17.82 4.32 -875.49 -3.78 -21.61 16 5 C 0.09 2.95 4.49 85.56 0.38 3.34 16 6 C -0.12 -3.37 4.45 -19.82 -0.09 -3.45 16 7 C -0.09 -1.73 8.82 22.26 0.20 -1.53 16 8 C -0.13 -1.87 10.04 22.27 0.22 -1.65 16 9 C -0.09 -1.39 10.04 22.26 0.22 -1.17 16 10 C -0.17 -3.80 10.03 22.31 0.22 -3.58 16 11 C 0.09 2.64 7.25 22.37 0.16 2.80 16 12 F -0.15 -5.97 16.76 44.97 0.75 -5.21 16 13 C 0.06 2.29 3.17 86.31 0.27 2.57 16 14 C 0.21 10.32 2.41 29.85 0.07 10.39 16 15 H 0.03 1.80 6.09 -2.39 -0.01 1.78 16 16 O -0.57 -27.24 10.10 -148.98 -1.51 -28.75 16 17 C -0.56 -32.33 9.30 25.60 0.24 -32.09 16 18 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 19 C 0.04 2.10 5.47 84.65 0.46 2.56 16 20 N -0.94 -59.18 13.96 21.45 0.30 -58.88 16 21 Si 0.93 47.67 26.99 68.60 1.85 49.52 16 22 H -0.29 -14.86 7.11 99.48 0.71 -14.16 16 23 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 24 H -0.21 -10.60 5.31 99.48 0.53 -10.07 16 25 H 0.05 1.27 6.52 -2.39 -0.02 1.26 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 2.13 6.35 -2.38 -0.02 2.12 16 29 H 0.06 1.26 6.59 -2.39 -0.02 1.25 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.20 6.76 -2.39 -0.02 1.18 16 32 H 0.05 2.11 6.51 -2.39 -0.02 2.09 16 33 H 0.06 1.66 6.22 -2.38 -0.01 1.64 16 34 H 0.15 2.22 8.00 -2.91 -0.02 2.20 16 35 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 38 H 0.03 1.12 7.33 -2.39 -0.02 1.10 16 39 H 0.07 2.91 5.98 -2.39 -0.01 2.90 16 40 H 0.36 15.53 9.02 -74.06 -0.67 14.87 16 41 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -71.26 327.73 1.56 -69.70 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.19 Total: 21.40 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 3.76 Total: -26.16 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -3.49 Total: -80.49 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -1.51 Total: -28.75 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.75 Total: -5.21 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 1.85 Total: 49.52 kcal Total: -71.26 1.56 -69.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929379475.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.369 kcal (2) G-P(sol) polarization free energy of solvation -71.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds