Wall clock time and date at job start Tue Mar 31 2020 05:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47479 * 2 1 4 4 N 1.46905 * 109.47044 * 119.99726 * 2 1 3 5 5 C 1.46900 * 110.99854 * 295.58988 * 4 2 1 6 6 C 1.50697 * 109.46723 * 279.18440 * 5 4 2 7 7 C 1.38251 * 119.97800 * 317.40251 * 6 5 4 8 8 C 1.38195 * 120.02934 * 179.72624 * 7 6 5 9 9 C 1.38463 * 119.97324 * 0.57190 * 8 7 6 10 10 F 1.35096 * 120.02589 * 179.68439 * 9 8 7 11 11 C 1.38463 * 119.94691 * 359.70417 * 9 8 7 12 12 C 1.38197 * 119.97284 * 0.02562 * 11 9 8 13 13 C 1.46903 * 110.99559 * 59.53719 * 4 2 1 14 14 C 1.52999 * 109.47016 * 77.87924 * 13 4 2 15 15 H 1.08995 * 109.47387 * 52.61408 * 14 13 4 16 16 O 1.42906 * 109.46965 * 292.61652 * 14 13 4 17 17 C 1.50704 * 109.47333 * 172.61820 * 14 13 4 18 18 H 1.07994 * 119.99945 * 359.97438 * 17 14 13 19 19 C 1.37874 * 119.99863 * 179.97438 * 17 14 13 20 20 N 1.31510 * 120.00328 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99723 * 179.97438 * 19 17 14 22 22 H 1.48507 * 109.47313 * 270.00125 * 21 19 17 23 23 H 1.48499 * 109.47255 * 30.00128 * 21 19 17 24 24 H 1.48500 * 109.47288 * 149.99873 * 21 19 17 25 25 H 1.08999 * 109.47241 * 291.92465 * 1 2 3 26 26 H 1.09007 * 109.46673 * 51.92100 * 1 2 3 27 27 H 1.08992 * 109.47351 * 171.92332 * 1 2 3 28 28 H 1.08997 * 109.47365 * 239.99681 * 2 1 3 29 29 H 1.09000 * 109.46965 * 167.92393 * 3 2 1 30 30 H 1.09000 * 109.46737 * 287.92344 * 3 2 1 31 31 H 1.08998 * 109.47157 * 47.91958 * 3 2 1 32 32 H 1.08991 * 109.47238 * 39.18429 * 5 4 2 33 33 H 1.09003 * 109.46806 * 159.18709 * 5 4 2 34 34 H 1.08002 * 119.98455 * 359.97438 * 7 6 5 35 35 H 1.08001 * 120.01486 * 180.25364 * 8 7 6 36 36 H 1.07993 * 120.01133 * 179.97438 * 11 9 8 37 37 H 1.08001 * 119.98565 * 180.02562 * 12 11 9 38 38 H 1.08993 * 109.47582 * 317.87692 * 13 4 2 39 39 H 1.08997 * 109.46932 * 197.87361 * 13 4 2 40 40 H 0.96697 * 113.99889 * 294.34891 * 16 14 13 41 41 H 0.97004 * 120.00279 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.6366 0.0319 2.4187 6 6 2.5947 1.1725 2.6472 7 6 3.9515 0.9825 2.4623 8 6 4.8305 2.0292 2.6660 9 6 4.3530 3.2655 3.0669 10 9 5.2120 4.2877 3.2726 11 6 2.9944 3.4531 3.2573 12 6 2.1168 2.4064 3.0476 13 6 1.5396 -2.0803 1.2390 14 6 2.3729 -2.9356 0.2825 15 1 3.4317 -2.8011 0.5035 16 8 2.1128 -2.5348 -1.0644 17 6 2.0040 -4.3866 0.4550 18 1 1.2509 -4.6703 1.1751 19 6 2.6281 -5.3517 -0.3066 20 7 3.5448 -5.0061 -1.1838 21 14 2.1713 -7.1503 -0.0922 22 1 3.0399 -7.7613 0.9459 23 1 0.7507 -7.2536 0.3275 24 1 2.3603 -7.8658 -1.3797 25 1 -0.3634 0.3837 0.9533 26 1 -0.3633 0.6339 -0.8090 27 1 -0.3633 -1.0174 -0.1444 28 1 1.8934 -0.5139 -0.8899 29 1 3.1087 1.4500 0.2150 30 1 1.8630 1.8904 -0.9778 31 1 1.5119 2.0147 0.7627 32 1 0.6258 0.4235 2.3063 33 1 1.6705 -0.6473 3.2706 34 1 4.3243 0.0167 2.1546 35 1 5.8901 1.8816 2.5175 36 1 2.6209 4.4168 3.5704 37 1 1.0571 2.5526 3.1956 38 1 0.4930 -2.1115 0.9362 39 1 1.6364 -2.4695 2.2525 40 1 1.2080 -2.7078 -1.3584 41 1 3.7823 -4.0722 -1.2949 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929379725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:14 Heat of formation + Delta-G solvation = -72.079149 kcal Electronic energy + Delta-G solvation = -22692.805472 eV Core-core repulsion = 19293.978282 eV Total energy + Delta-G solvation = -3398.827190 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.87804 -39.76930 -37.88382 -35.52939 -32.17071 -31.86890 -31.20613 -30.96402 -27.80360 -26.89852 -25.31976 -23.55876 -22.93547 -21.67208 -20.96490 -19.08560 -17.63290 -17.33588 -16.48920 -15.92464 -15.56201 -15.52154 -14.93340 -14.56190 -14.05952 -13.92723 -13.77358 -13.53655 -13.38645 -13.08070 -12.94223 -12.72429 -12.29026 -12.20305 -11.91317 -11.66313 -11.41101 -11.06527 -10.97759 -10.86688 -10.77066 -10.61527 -10.51635 -10.14155 -9.93111 -9.20864 -9.03562 -8.47485 -8.41151 -8.12126 -7.65097 -6.36025 -4.20213 1.17081 1.27949 3.40512 3.42942 3.59038 3.60771 4.27980 4.29912 4.52568 4.78140 4.86553 4.94209 5.24165 5.32877 5.33068 5.34982 5.41915 5.55561 5.60265 5.73359 5.81742 5.84190 5.97152 6.01049 6.02506 6.07823 6.12557 6.15034 6.27764 6.33591 6.34358 6.60470 6.61863 6.67035 6.88088 6.93800 7.39995 7.60508 7.69988 8.02411 8.35221 8.84976 9.12533 9.65172 11.03965 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026547 B = 0.004071 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.474373 B = 6876.701788 C = 7267.086406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.069 3.931 3 C -0.147 4.147 4 N -0.522 5.522 5 C 0.079 3.921 6 C -0.068 4.068 7 C -0.061 4.061 8 C -0.156 4.156 9 C 0.084 3.916 10 F -0.147 7.147 11 C -0.157 4.157 12 C -0.097 4.097 13 C 0.035 3.965 14 C 0.223 3.777 15 H 0.055 0.945 16 O -0.578 6.578 17 C -0.652 4.652 18 H 0.047 0.953 19 C 0.036 3.964 20 N -0.892 5.892 21 Si 1.067 2.933 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.284 1.284 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.114 0.886 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.143 0.857 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.034 0.966 39 H 0.065 0.935 40 H 0.350 0.650 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 14.545 7.175 16.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.039 4.039 3 C -0.205 4.205 4 N -0.245 5.245 5 C -0.049 4.049 6 C -0.069 4.069 7 C -0.079 4.079 8 C -0.175 4.175 9 C 0.065 3.935 10 F -0.126 7.126 11 C -0.176 4.176 12 C -0.116 4.116 13 C -0.092 4.092 14 C 0.165 3.835 15 H 0.073 0.927 16 O -0.382 6.382 17 C -0.690 4.690 18 H 0.066 0.934 19 C -0.173 4.173 20 N -0.527 5.527 21 Si 0.896 3.104 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.210 1.210 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.132 0.868 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.161 0.839 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.195 0.805 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.411 13.238 6.647 15.008 hybrid contribution -1.736 1.614 0.813 2.506 sum -4.147 14.852 7.461 17.130 Atomic orbital electron populations 1.22452 0.98775 1.01978 1.01059 1.22001 0.91806 0.94589 0.95539 1.22134 1.01901 0.95815 1.00631 1.62348 1.59330 1.02467 1.00362 1.21173 0.95079 0.94110 0.94533 1.19995 0.94811 0.94491 0.97593 1.21015 0.92196 0.99139 0.95557 1.21210 1.01205 0.92006 1.03068 1.17719 0.87495 0.85125 1.03210 1.91466 1.69959 1.58286 1.92861 1.20981 0.91548 1.00471 1.04622 1.20831 0.99429 0.91974 0.99370 1.23033 0.98038 0.86529 1.01647 1.19507 0.95080 0.90876 0.78005 0.92697 1.86446 1.33590 1.85358 1.32785 1.22459 1.27195 0.92578 1.26785 0.93422 1.25735 0.93544 1.05185 0.92871 1.70600 1.28048 1.22583 1.31461 0.83590 0.75555 0.74935 0.76324 1.21433 1.21603 1.21006 0.93290 0.92671 0.92153 0.86794 0.91820 0.93311 0.93092 0.93357 0.90127 0.83947 0.85054 0.85330 0.85632 0.94802 0.91644 0.80544 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 8.50 37.16 0.32 -2.23 16 2 C 0.07 1.07 2.77 -67.71 -0.19 0.88 16 3 C -0.15 -2.04 7.76 37.16 0.29 -1.76 16 4 N -0.52 -8.51 3.77 -228.09 -0.86 -9.37 16 5 C 0.08 1.07 4.85 -4.98 -0.02 1.05 16 6 C -0.07 -0.87 3.25 -104.62 -0.34 -1.21 16 7 C -0.06 -0.82 7.89 -39.59 -0.31 -1.13 16 8 C -0.16 -1.97 10.03 -39.51 -0.40 -2.36 16 9 C 0.08 1.05 7.30 -39.42 -0.29 0.76 16 10 F -0.15 -1.91 17.27 2.25 0.04 -1.87 16 11 C -0.16 -1.76 10.03 -39.51 -0.40 -2.15 16 12 C -0.10 -1.08 8.34 -39.59 -0.33 -1.41 16 13 C 0.03 0.66 4.63 -3.82 -0.02 0.65 16 14 C 0.22 5.30 2.65 -27.88 -0.07 5.22 16 15 H 0.06 1.47 8.01 -51.93 -0.42 1.05 16 16 O -0.58 -13.51 9.35 -35.23 -0.33 -13.84 16 17 C -0.65 -17.42 8.71 -34.44 -0.30 -17.72 16 18 H 0.05 1.26 7.74 -52.49 -0.41 0.86 16 19 C 0.04 0.99 5.40 -17.82 -0.10 0.90 16 20 N -0.89 -26.59 13.53 55.43 0.75 -25.84 16 21 Si 1.07 24.49 29.90 -169.99 -5.08 19.41 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H 0.05 0.63 5.91 -51.93 -0.31 0.32 16 26 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 27 H 0.06 0.90 6.48 -51.93 -0.34 0.57 16 28 H 0.11 2.09 5.64 -51.93 -0.29 1.80 16 29 H 0.06 0.95 6.33 -51.93 -0.33 0.62 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.65 5.53 -51.93 -0.29 0.36 16 32 H 0.05 0.61 5.51 -51.93 -0.29 0.33 16 33 H 0.08 1.09 7.47 -51.93 -0.39 0.71 16 34 H 0.14 2.09 7.80 -52.49 -0.41 1.68 16 35 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.13 1.15 8.02 -52.49 -0.42 0.73 16 38 H 0.03 0.64 5.71 -51.93 -0.30 0.34 16 39 H 0.07 1.26 7.49 -51.93 -0.39 0.87 16 40 H 0.35 7.56 9.01 45.56 0.41 7.97 16 41 H 0.29 8.66 6.47 -40.82 -0.26 8.39 16 LS Contribution 322.76 15.07 4.86 4.86 Total: -1.00 -28.67 322.76 -7.68 -36.35 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -4.90 Total: 10.81 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -2.16 Total: -20.51 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.11 Total: -35.21 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.33 Total: -13.84 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.08 Total: 19.41 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.67 -7.68 -36.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929379725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.724 kcal (2) G-P(sol) polarization free energy of solvation -28.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds