Wall clock time and date at job start Tue Mar 31 2020 05:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47479 * 2 1 4 4 N 1.46905 * 109.47044 * 119.99726 * 2 1 3 5 5 C 1.46900 * 110.99854 * 295.58988 * 4 2 1 6 6 C 1.50697 * 109.46723 * 279.18440 * 5 4 2 7 7 C 1.38251 * 119.97800 * 317.40251 * 6 5 4 8 8 C 1.38195 * 120.02934 * 179.72624 * 7 6 5 9 9 C 1.38463 * 119.97324 * 0.57190 * 8 7 6 10 10 F 1.35096 * 120.02589 * 179.68439 * 9 8 7 11 11 C 1.38463 * 119.94691 * 359.70417 * 9 8 7 12 12 C 1.38197 * 119.97284 * 0.02562 * 11 9 8 13 13 C 1.46903 * 110.99559 * 59.53719 * 4 2 1 14 14 C 1.52999 * 109.47016 * 77.87924 * 13 4 2 15 15 H 1.08995 * 109.47387 * 52.61408 * 14 13 4 16 16 O 1.42906 * 109.46965 * 292.61652 * 14 13 4 17 17 C 1.50704 * 109.47333 * 172.61820 * 14 13 4 18 18 H 1.07994 * 119.99945 * 359.97438 * 17 14 13 19 19 C 1.37874 * 119.99863 * 179.97438 * 17 14 13 20 20 N 1.31510 * 120.00328 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99723 * 179.97438 * 19 17 14 22 22 H 1.48507 * 109.47313 * 270.00125 * 21 19 17 23 23 H 1.48499 * 109.47255 * 30.00128 * 21 19 17 24 24 H 1.48500 * 109.47288 * 149.99873 * 21 19 17 25 25 H 1.08999 * 109.47241 * 291.92465 * 1 2 3 26 26 H 1.09007 * 109.46673 * 51.92100 * 1 2 3 27 27 H 1.08992 * 109.47351 * 171.92332 * 1 2 3 28 28 H 1.08997 * 109.47365 * 239.99681 * 2 1 3 29 29 H 1.09000 * 109.46965 * 167.92393 * 3 2 1 30 30 H 1.09000 * 109.46737 * 287.92344 * 3 2 1 31 31 H 1.08998 * 109.47157 * 47.91958 * 3 2 1 32 32 H 1.08991 * 109.47238 * 39.18429 * 5 4 2 33 33 H 1.09003 * 109.46806 * 159.18709 * 5 4 2 34 34 H 1.08002 * 119.98455 * 359.97438 * 7 6 5 35 35 H 1.08001 * 120.01486 * 180.25364 * 8 7 6 36 36 H 1.07993 * 120.01133 * 179.97438 * 11 9 8 37 37 H 1.08001 * 119.98565 * 180.02562 * 12 11 9 38 38 H 1.08993 * 109.47582 * 317.87692 * 13 4 2 39 39 H 1.08997 * 109.46932 * 197.87361 * 13 4 2 40 40 H 0.96697 * 113.99889 * 294.34891 * 16 14 13 41 41 H 0.97004 * 120.00279 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.6366 0.0319 2.4187 6 6 2.5947 1.1725 2.6472 7 6 3.9515 0.9825 2.4623 8 6 4.8305 2.0292 2.6660 9 6 4.3530 3.2655 3.0669 10 9 5.2120 4.2877 3.2726 11 6 2.9944 3.4531 3.2573 12 6 2.1168 2.4064 3.0476 13 6 1.5396 -2.0803 1.2390 14 6 2.3729 -2.9356 0.2825 15 1 3.4317 -2.8011 0.5035 16 8 2.1128 -2.5348 -1.0644 17 6 2.0040 -4.3866 0.4550 18 1 1.2509 -4.6703 1.1751 19 6 2.6281 -5.3517 -0.3066 20 7 3.5448 -5.0061 -1.1838 21 14 2.1713 -7.1503 -0.0922 22 1 3.0399 -7.7613 0.9459 23 1 0.7507 -7.2536 0.3275 24 1 2.3603 -7.8658 -1.3797 25 1 -0.3634 0.3837 0.9533 26 1 -0.3633 0.6339 -0.8090 27 1 -0.3633 -1.0174 -0.1444 28 1 1.8934 -0.5139 -0.8899 29 1 3.1087 1.4500 0.2150 30 1 1.8630 1.8904 -0.9778 31 1 1.5119 2.0147 0.7627 32 1 0.6258 0.4235 2.3063 33 1 1.6705 -0.6473 3.2706 34 1 4.3243 0.0167 2.1546 35 1 5.8901 1.8816 2.5175 36 1 2.6209 4.4168 3.5704 37 1 1.0571 2.5526 3.1956 38 1 0.4930 -2.1115 0.9362 39 1 1.6364 -2.4695 2.2525 40 1 1.2080 -2.7078 -1.3584 41 1 3.7823 -4.0722 -1.2949 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929379725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:13 Heat of formation + Delta-G solvation = -89.642502 kcal Electronic energy + Delta-G solvation = -22693.567076 eV Core-core repulsion = 19293.978282 eV Total energy + Delta-G solvation = -3399.588794 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.86290 -40.88217 -39.17467 -37.27102 -34.21363 -33.06825 -32.40859 -32.00902 -29.41220 -28.02439 -26.75206 -25.21190 -23.90220 -23.05496 -22.37649 -20.34222 -19.36726 -18.58884 -17.59482 -17.23015 -16.72543 -16.55043 -16.50827 -15.88603 -15.66812 -15.39686 -15.15243 -14.74947 -14.58138 -14.39092 -14.11707 -13.99950 -13.93053 -13.37430 -13.28688 -12.94723 -12.64739 -12.48624 -12.31504 -12.22730 -12.12521 -11.98865 -11.91443 -11.83912 -11.43572 -11.06387 -10.59180 -10.04569 -9.97386 -9.36195 -9.02035 -8.56515 -6.42217 0.19949 0.34424 1.54763 1.62465 1.79919 2.56116 2.63925 3.10016 3.20725 3.33663 3.84442 3.86629 4.00955 4.04257 4.08874 4.22627 4.31792 4.39023 4.41486 4.48471 4.54924 4.64211 4.74178 4.77451 4.89729 4.95233 4.98046 5.04488 5.10310 5.20780 5.21576 5.34346 5.40502 5.47896 5.62736 5.66632 5.84953 5.98054 6.16046 6.33013 6.39595 6.60964 7.24290 7.53760 8.80420 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026547 B = 0.004071 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.474373 B = 6876.701788 C = 7267.086406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.069 3.931 3 C -0.138 4.138 4 N -0.534 5.534 5 C 0.082 3.918 6 C -0.073 4.073 7 C -0.075 4.075 8 C -0.163 4.163 9 C 0.072 3.928 10 F -0.151 7.151 11 C -0.149 4.149 12 C -0.089 4.089 13 C 0.053 3.947 14 C 0.225 3.775 15 H 0.015 0.985 16 O -0.582 6.582 17 C -0.658 4.658 18 H 0.050 0.950 19 C -0.016 4.016 20 N -0.923 5.923 21 Si 1.116 2.884 22 H -0.276 1.276 23 H -0.269 1.269 24 H -0.287 1.287 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.135 0.865 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.041 0.959 39 H 0.063 0.937 40 H 0.357 0.643 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 15.812 8.398 18.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.039 4.039 3 C -0.195 4.195 4 N -0.257 5.257 5 C -0.045 4.045 6 C -0.074 4.074 7 C -0.093 4.093 8 C -0.182 4.182 9 C 0.053 3.947 10 F -0.130 7.130 11 C -0.168 4.168 12 C -0.107 4.107 13 C -0.074 4.074 14 C 0.168 3.832 15 H 0.033 0.967 16 O -0.387 6.387 17 C -0.696 4.696 18 H 0.068 0.932 19 C -0.218 4.218 20 N -0.559 5.559 21 Si 0.938 3.062 22 H -0.202 1.202 23 H -0.193 1.193 24 H -0.213 1.213 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.138 0.862 35 H 0.153 0.847 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.203 0.797 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.545 14.530 7.885 17.145 hybrid contribution -1.044 1.303 0.444 1.728 sum -5.588 15.833 8.330 18.743 Atomic orbital electron populations 1.22356 0.96965 1.01558 1.02554 1.21897 0.93209 0.95020 0.93804 1.22042 1.01014 0.94723 1.01739 1.62173 1.60025 1.01447 1.02050 1.21186 0.96232 0.94163 0.92903 1.19954 0.94071 0.95072 0.98296 1.20859 0.93076 0.98500 0.96882 1.21256 1.01474 0.92184 1.03243 1.17896 0.88270 0.84841 1.03674 1.91456 1.70276 1.58336 1.92941 1.21281 0.90690 1.01609 1.03209 1.21082 1.00904 0.90748 0.97961 1.22603 0.97241 0.87771 0.99817 1.19310 0.93741 0.90938 0.79258 0.96667 1.86418 1.34238 1.85262 1.32776 1.22869 1.26505 0.94194 1.26054 0.93160 1.27193 0.92862 1.09517 0.92210 1.70744 1.30154 1.21381 1.33621 0.82966 0.76597 0.70241 0.76415 1.20214 1.19345 1.21272 0.91640 0.91170 0.93586 0.90212 0.93365 0.92403 0.91328 0.91385 0.90195 0.86246 0.84687 0.82719 0.82652 0.94081 0.91885 0.79712 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.46 8.50 71.98 0.61 -3.85 16 2 C 0.07 2.08 2.77 44.92 0.12 2.20 16 3 C -0.14 -3.60 7.76 71.98 0.56 -3.04 16 4 N -0.53 -17.26 3.77 -875.53 -3.30 -20.57 16 5 C 0.08 2.09 4.85 85.56 0.42 2.50 16 6 C -0.07 -1.73 3.25 -19.86 -0.06 -1.79 16 7 C -0.07 -2.01 7.89 22.26 0.18 -1.83 16 8 C -0.16 -4.07 10.03 22.31 0.22 -3.84 16 9 C 0.07 1.70 7.30 22.38 0.16 1.86 16 10 F -0.15 -3.72 17.27 44.97 0.78 -2.95 16 11 C -0.15 -2.85 10.03 22.31 0.22 -2.63 16 12 C -0.09 -1.65 8.34 22.26 0.19 -1.47 16 13 C 0.05 2.05 4.63 86.30 0.40 2.45 16 14 C 0.23 11.06 2.65 29.85 0.08 11.14 16 15 H 0.02 0.88 8.01 -2.39 -0.02 0.86 16 16 O -0.58 -28.20 9.35 -148.98 -1.39 -29.60 16 17 C -0.66 -35.59 8.71 25.60 0.22 -35.37 16 18 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 19 C -0.02 -0.88 5.40 84.65 0.46 -0.42 16 20 N -0.92 -56.57 13.53 21.45 0.29 -56.28 16 21 Si 1.12 49.12 29.90 68.60 2.05 51.17 16 22 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 25 H 0.06 1.44 5.91 -2.39 -0.01 1.43 16 26 H 0.07 1.57 8.13 -2.38 -0.02 1.55 16 27 H 0.05 1.30 6.48 -2.39 -0.02 1.28 16 28 H 0.08 2.99 5.64 -2.39 -0.01 2.97 16 29 H 0.05 1.41 6.33 -2.39 -0.02 1.40 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.53 5.53 -2.39 -0.01 1.52 16 32 H 0.07 1.47 5.51 -2.39 -0.01 1.46 16 33 H 0.08 2.04 7.47 -2.39 -0.02 2.03 16 34 H 0.12 3.73 7.80 -2.91 -0.02 3.71 16 35 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 37 H 0.16 2.01 8.02 -2.91 -0.02 1.99 16 38 H 0.04 1.52 5.71 -2.39 -0.01 1.50 16 39 H 0.06 2.42 7.49 -2.39 -0.02 2.40 16 40 H 0.36 15.83 9.01 -74.06 -0.67 15.17 16 41 H 0.27 17.03 6.47 -92.71 -0.60 16.43 16 Total: -1.00 -63.13 322.76 2.75 -60.39 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.55 Total: 31.92 kcal Atomic # 6 Polarization: -37.86 SS G_CDS: 3.78 Total: -34.08 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -3.01 Total: -76.85 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -1.39 Total: -29.60 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.78 Total: -2.95 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 2.05 Total: 51.17 kcal Total: -63.13 2.75 -60.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929379725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.257 kcal (2) G-P(sol) polarization free energy of solvation -63.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds