Wall clock time and date at job start Tue Mar 31 2020 05:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46883 * 2 1 4 4 N 1.46899 * 109.46929 * 179.06134 * 3 2 1 5 5 C 1.46910 * 110.99845 * 287.60079 * 4 3 2 6 6 C 1.50701 * 109.47138 * 160.50692 * 5 4 3 7 7 C 1.38237 * 119.97408 * 275.64962 * 6 5 4 8 8 C 1.38203 * 120.02030 * 179.72437 * 7 6 5 9 9 C 1.38460 * 119.97743 * 0.57086 * 8 7 6 10 10 F 1.35093 * 120.02787 * 179.68157 * 9 8 7 11 11 C 1.38459 * 119.94404 * 359.70529 * 9 8 7 12 12 C 1.38196 * 119.97671 * 359.97438 * 11 9 8 13 13 C 1.46903 * 111.00369 * 163.65188 * 4 3 2 14 14 C 1.52997 * 109.46768 * 293.95259 * 13 4 3 15 15 H 1.08998 * 109.47167 * 59.99451 * 14 13 4 16 16 O 1.42902 * 109.46958 * 299.99599 * 14 13 4 17 17 C 1.50694 * 109.47065 * 179.97438 * 14 13 4 18 18 H 1.08000 * 120.00031 * 0.02562 * 17 14 13 19 19 C 1.37878 * 120.00370 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99734 * 0.02562 * 19 17 14 21 21 Si 1.86794 * 120.00484 * 180.02562 * 19 17 14 22 22 H 1.48508 * 109.47131 * 60.00399 * 21 19 17 23 23 H 1.48500 * 109.47222 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47381 * 300.00644 * 21 19 17 25 25 H 1.09001 * 109.47396 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47456 * 300.00190 * 1 2 3 27 27 H 1.09006 * 109.47184 * 60.00228 * 1 2 3 28 28 H 1.08994 * 109.46954 * 239.99898 * 2 1 3 29 29 H 1.09001 * 109.46728 * 119.99765 * 2 1 3 30 30 H 1.08997 * 109.47094 * 59.05847 * 3 2 1 31 31 H 1.08997 * 109.47149 * 299.05339 * 3 2 1 32 32 H 1.08996 * 109.47241 * 280.51210 * 5 4 3 33 33 H 1.09000 * 109.46727 * 40.51302 * 5 4 3 34 34 H 1.07998 * 119.99039 * 359.97438 * 7 6 5 35 35 H 1.08007 * 120.01233 * 180.24842 * 8 7 6 36 36 H 1.07997 * 120.00949 * 179.97438 * 11 9 8 37 37 H 1.08007 * 119.98737 * 180.02562 * 12 11 9 38 38 H 1.08997 * 109.47210 * 173.95145 * 13 4 3 39 39 H 1.09004 * 109.46933 * 53.95048 * 13 4 3 40 40 H 0.96693 * 114.00343 * 299.99990 * 16 14 13 41 41 H 0.97002 * 120.00094 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5088 1.4426 0.0227 5 6 4.0149 1.0350 1.3402 6 6 5.4476 0.5857 1.2110 7 6 5.7326 -0.7130 0.8325 8 6 7.0461 -1.1245 0.7082 9 6 8.0766 -0.2389 0.9742 10 9 9.3609 -0.6419 0.8592 11 6 7.7898 1.0599 1.3587 12 6 6.4757 1.4711 1.4760 13 6 4.0413 2.7565 -0.3623 14 6 3.6999 3.0356 -1.8274 15 1 2.6175 3.0304 -1.9556 16 8 4.2822 2.0251 -2.6530 17 6 4.2455 4.3837 -2.2222 18 1 4.7825 4.9814 -1.5005 19 6 4.0602 4.8537 -3.5051 20 7 3.4068 4.1256 -4.3841 21 14 4.7372 6.5243 -3.9948 22 1 6.2119 6.5315 -3.8197 23 1 4.4057 6.7953 -5.4167 24 1 4.1318 7.5746 -3.1370 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6629 1.9612 0.8814 31 1 1.6905 1.9514 -0.8983 32 1 3.9594 1.8790 2.0278 33 1 3.4097 0.2136 1.7237 34 1 4.9286 -1.4051 0.6301 35 1 7.2686 -2.1380 0.4086 36 1 8.5928 1.7514 1.5669 37 1 6.2517 2.4843 1.7755 38 1 5.1236 2.7616 -0.2341 39 1 3.5971 3.5273 0.2675 40 1 5.2457 1.9723 -2.5896 41 1 3.2760 4.4564 -5.2866 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929381168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:16 Heat of formation + Delta-G solvation = -76.767275 kcal Electronic energy + Delta-G solvation = -22317.400729 eV Core-core repulsion = 18918.370246 eV Total energy + Delta-G solvation = -3399.030483 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.79687 -39.30596 -37.45236 -35.07523 -33.07170 -32.05057 -31.06113 -30.89883 -28.31218 -26.08901 -25.38156 -22.97649 -22.90115 -21.34677 -20.88726 -19.67861 -17.56581 -16.99179 -16.23283 -15.82426 -15.52778 -15.22661 -14.72338 -14.61246 -14.45300 -13.94720 -13.67145 -13.51555 -13.49377 -13.25458 -12.95254 -12.62581 -12.21998 -12.00516 -11.69547 -11.45473 -11.27809 -11.15709 -10.90349 -10.86411 -10.82293 -10.78945 -10.29816 -10.24543 -10.01483 -9.01690 -8.90361 -8.54017 -8.46136 -8.06903 -7.65144 -5.98731 -4.17004 1.24784 1.35551 3.29124 3.34730 3.36063 3.64917 4.35607 4.36388 4.54452 4.79501 4.92858 5.00815 5.21621 5.28525 5.29598 5.37334 5.39290 5.56957 5.66140 5.68682 5.83447 5.98368 6.01454 6.05613 6.13775 6.14398 6.21281 6.21815 6.31753 6.36894 6.52926 6.56163 6.60691 6.69685 6.84544 6.99772 7.54379 7.62040 7.79288 7.90265 8.22422 8.86496 9.48661 9.65235 11.05257 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.005829 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.397765 B = 4802.375577 C = 6595.056885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.054 3.946 4 N -0.521 5.521 5 C 0.087 3.913 6 C -0.072 4.072 7 C -0.067 4.067 8 C -0.155 4.155 9 C 0.088 3.912 10 F -0.146 7.146 11 C -0.153 4.153 12 C -0.084 4.084 13 C 0.028 3.972 14 C 0.239 3.761 15 H 0.054 0.946 16 O -0.552 6.552 17 C -0.575 4.575 18 H 0.053 0.947 19 C 0.081 3.919 20 N -0.858 5.858 21 Si 0.887 3.113 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.277 1.277 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.023 0.977 31 H 0.087 0.913 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.066 0.934 39 H 0.024 0.976 40 H 0.341 0.659 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.733 -8.867 12.800 15.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.074 4.074 4 N -0.244 5.244 5 C -0.041 4.041 6 C -0.073 4.073 7 C -0.086 4.086 8 C -0.174 4.174 9 C 0.069 3.931 10 F -0.125 7.125 11 C -0.172 4.172 12 C -0.102 4.102 13 C -0.099 4.099 14 C 0.181 3.819 15 H 0.071 0.929 16 O -0.354 6.354 17 C -0.613 4.613 18 H 0.071 0.929 19 C -0.125 4.125 20 N -0.494 5.494 21 Si 0.715 3.285 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.105 0.895 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.084 0.916 39 H 0.043 0.957 40 H 0.184 0.816 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.210 -9.331 12.099 15.327 hybrid contribution 0.983 1.759 0.382 2.050 sum 2.192 -7.572 12.480 14.762 Atomic orbital electron populations 1.21737 0.96220 1.01155 1.01720 1.21505 0.94769 0.97087 1.02129 1.22182 0.87437 0.96565 1.01193 1.62010 1.07353 1.30500 1.24549 1.21099 0.91656 0.99666 0.91657 1.19862 0.95432 0.93569 0.98442 1.20829 0.95402 0.95842 0.96513 1.21096 0.92406 1.00047 1.03841 1.17698 0.78353 0.93951 1.03078 1.91469 1.35966 1.91129 1.93907 1.21061 0.97998 0.94663 1.03499 1.20948 0.91354 0.99448 0.98462 1.23142 0.99315 0.86354 1.01106 1.19303 0.94567 0.86022 0.82040 0.92865 1.86551 1.22011 1.58082 1.68733 1.21616 1.38776 1.03730 0.97191 0.92916 1.25004 0.94260 0.96707 0.96565 1.70068 1.38753 1.36381 1.04166 0.86768 0.79630 0.84597 0.77545 1.20156 1.21185 1.20247 0.93029 0.93279 0.92454 0.90956 0.92838 0.95850 0.89521 0.94434 0.90294 0.85115 0.85104 0.85102 0.85390 0.91567 0.95738 0.81560 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.41 16 2 C -0.12 -1.59 6.02 -26.73 -0.16 -1.75 16 3 C 0.05 0.87 4.83 -3.82 -0.02 0.85 16 4 N -0.52 -8.87 4.25 -236.07 -1.00 -9.88 16 5 C 0.09 1.20 4.96 -4.97 -0.02 1.18 16 6 C -0.07 -0.99 5.02 -104.62 -0.53 -1.52 16 7 C -0.07 -0.87 9.72 -39.59 -0.38 -1.25 16 8 C -0.16 -1.96 10.03 -39.51 -0.40 -2.36 16 9 C 0.09 1.20 7.30 -39.42 -0.29 0.91 16 10 F -0.15 -2.03 17.27 2.25 0.04 -1.99 16 11 C -0.15 -2.00 10.03 -39.52 -0.40 -2.40 16 12 C -0.08 -1.12 8.40 -39.59 -0.33 -1.45 16 13 C 0.03 0.56 4.39 -3.82 -0.02 0.55 16 14 C 0.24 5.94 2.73 -27.89 -0.08 5.87 16 15 H 0.05 1.46 6.28 -51.93 -0.33 1.13 16 16 O -0.55 -14.37 12.60 -35.23 -0.44 -14.81 16 17 C -0.57 -15.64 8.76 -34.44 -0.30 -15.94 16 18 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 19 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 20 N -0.86 -25.34 12.84 55.43 0.71 -24.63 16 21 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.05 0.64 6.54 -51.93 -0.34 0.30 16 30 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 31 H 0.09 1.65 5.93 -51.93 -0.31 1.34 16 32 H 0.04 0.50 7.91 -51.93 -0.41 0.09 16 33 H 0.08 0.96 6.24 -51.93 -0.32 0.64 16 34 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.13 1.59 8.01 -52.48 -0.42 1.17 16 38 H 0.07 1.31 6.34 -51.93 -0.33 0.98 16 39 H 0.02 0.49 8.12 -51.93 -0.42 0.07 16 40 H 0.34 8.24 9.04 45.56 0.41 8.65 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 340.55 15.07 5.13 5.13 Total: -1.00 -30.00 340.55 -8.62 -38.62 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.39 Total: 7.98 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -2.65 Total: -16.55 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: -0.29 Total: -34.50 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.44 Total: -14.81 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.00 -8.62 -38.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929381168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.151 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds