Wall clock time and date at job start Tue Mar 31 2020 05:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47419 * 2 1 4 4 N 1.46905 * 109.47352 * 179.51248 * 3 2 1 5 5 C 1.46903 * 110.99847 * 288.02601 * 4 3 2 6 6 C 1.50694 * 109.47205 * 160.16957 * 5 4 3 7 7 C 1.38217 * 120.01204 * 101.83794 * 6 5 4 8 8 C 1.38224 * 120.02293 * 179.97438 * 7 6 5 9 9 C 1.38263 * 120.05495 * 0.02562 * 8 7 6 10 10 C 1.38178 * 120.02420 * 359.97438 * 9 8 7 11 11 C 1.38446 * 120.01309 * 281.56536 * 6 5 4 12 12 F 1.35093 * 120.02409 * 359.97438 * 11 6 5 13 13 C 1.46900 * 111.00157 * 164.07139 * 4 3 2 14 14 C 1.52997 * 109.46869 * 293.95342 * 13 4 3 15 15 H 1.09002 * 109.47491 * 60.00579 * 14 13 4 16 16 O 1.42898 * 109.47328 * 299.99905 * 14 13 4 17 17 C 1.50703 * 109.46936 * 179.97438 * 14 13 4 18 18 H 1.08005 * 119.99912 * 0.02562 * 17 14 13 19 19 C 1.37878 * 120.00161 * 179.97438 * 17 14 13 20 20 N 1.31516 * 120.00229 * 0.02562 * 19 17 14 21 21 Si 1.86804 * 120.00118 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.46976 * 270.00078 * 21 19 17 23 23 H 1.48498 * 109.47044 * 30.00058 * 21 19 17 24 24 H 1.48498 * 109.47136 * 150.00524 * 21 19 17 25 25 H 1.09004 * 109.47037 * 300.00160 * 1 2 3 26 26 H 1.09001 * 109.47225 * 59.99600 * 1 2 3 27 27 H 1.09001 * 109.47450 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47037 * 239.99840 * 2 1 3 29 29 H 1.09001 * 109.47225 * 120.00400 * 2 1 3 30 30 H 1.08997 * 109.47501 * 59.50843 * 3 2 1 31 31 H 1.09002 * 109.47175 * 299.51127 * 3 2 1 32 32 H 1.08997 * 109.46911 * 280.17086 * 5 4 3 33 33 H 1.08999 * 109.47200 * 40.16905 * 5 4 3 34 34 H 1.07993 * 119.99149 * 0.02562 * 7 6 5 35 35 H 1.08008 * 119.96934 * 180.02562 * 8 7 6 36 36 H 1.07999 * 119.99104 * 179.97438 * 9 8 7 37 37 H 1.07997 * 120.01293 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.47221 * 173.95045 * 13 4 3 39 39 H 1.09006 * 109.47079 * 53.95063 * 13 4 3 40 40 H 0.96702 * 114.00030 * 300.00208 * 16 14 13 41 41 H 0.97004 * 119.99507 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0118 5 6 4.0250 1.0217 1.3213 6 6 5.4539 0.5660 1.1755 7 6 6.4880 1.4011 1.5545 8 6 7.7988 0.9832 1.4213 9 6 8.0772 -0.2702 0.9084 10 6 7.0451 -1.1068 0.5287 11 6 5.7313 -0.6914 0.6670 12 9 4.7212 -1.5108 0.3018 13 6 4.0385 2.7601 -0.3641 14 6 3.6863 3.0538 -1.8237 15 1 2.6029 3.0499 -1.9439 16 8 4.2624 2.0516 -2.6637 17 6 4.2289 4.4059 -2.2091 18 1 4.7712 4.9964 -1.4855 19 6 4.0340 4.8886 -3.4859 20 7 3.3741 4.1693 -4.3672 21 14 4.7073 6.5642 -3.9638 22 1 3.6876 7.6063 -3.6814 23 1 5.9350 6.8470 -3.1776 24 1 5.0344 6.5714 -5.4123 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6696 1.9588 0.8855 31 1 1.6839 1.9537 -0.8943 32 1 3.9801 1.8605 2.0160 33 1 3.4189 0.2004 1.7038 34 1 6.2718 2.3802 1.9557 35 1 8.6061 1.6363 1.7182 36 1 9.1018 -0.5956 0.8044 37 1 7.2628 -2.0857 0.1277 38 1 5.1219 2.7641 -0.2438 39 1 3.5990 3.5246 0.2767 40 1 5.2264 1.9983 -2.6080 41 1 3.0248 3.2990 -4.1191 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929384628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:18 Heat of formation + Delta-G solvation = -81.906871 kcal Electronic energy + Delta-G solvation = -22810.823677 eV Core-core repulsion = 19411.570325 eV Total energy + Delta-G solvation = -3399.253352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.60365 -39.19957 -37.64188 -35.38991 -33.22453 -32.01875 -31.34720 -30.40935 -28.31634 -26.30016 -25.04491 -22.94071 -22.65932 -21.37220 -21.09634 -19.84247 -17.46238 -17.21489 -16.28533 -15.94360 -15.58462 -15.16030 -14.94592 -14.75567 -14.11857 -13.87109 -13.73775 -13.67787 -13.29232 -13.05331 -12.93751 -12.48203 -12.19321 -12.17188 -11.85819 -11.72502 -11.37498 -11.27794 -10.99259 -10.88035 -10.75641 -10.41519 -10.28475 -10.11765 -9.94391 -9.13755 -8.90948 -8.51597 -8.42639 -7.98085 -7.71877 -6.31925 -4.15114 1.26020 1.29262 3.41810 3.45362 3.61395 3.62845 4.38082 4.44485 4.56097 4.80025 4.81809 5.01653 5.18961 5.25088 5.33629 5.38976 5.42127 5.52900 5.56302 5.66080 5.79432 5.92501 5.96086 6.03851 6.05859 6.12973 6.15758 6.22888 6.27291 6.37823 6.43600 6.45716 6.52710 6.60786 6.71608 6.98644 7.41931 7.56174 7.67663 8.06979 8.39050 8.89553 9.27894 9.71408 11.08188 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013448 B = 0.006097 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.625466 B = 4590.973988 C = 5964.960263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.056 3.944 4 N -0.521 5.521 5 C 0.089 3.911 6 C -0.101 4.101 7 C -0.086 4.086 8 C -0.133 4.133 9 C -0.096 4.096 10 C -0.160 4.160 11 C 0.124 3.876 12 F -0.133 7.133 13 C 0.038 3.962 14 C 0.222 3.778 15 H 0.047 0.953 16 O -0.569 6.569 17 C -0.651 4.651 18 H 0.047 0.953 19 C 0.035 3.965 20 N -0.893 5.893 21 Si 1.068 2.932 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.284 1.284 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.024 0.976 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.066 0.934 39 H 0.025 0.975 40 H 0.350 0.650 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.311 -8.736 13.456 16.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.072 4.072 4 N -0.245 5.245 5 C -0.039 4.039 6 C -0.103 4.103 7 C -0.104 4.104 8 C -0.151 4.151 9 C -0.115 4.115 10 C -0.179 4.179 11 C 0.104 3.896 12 F -0.111 7.111 13 C -0.090 4.090 14 C 0.164 3.836 15 H 0.064 0.936 16 O -0.372 6.372 17 C -0.689 4.689 18 H 0.065 0.935 19 C -0.174 4.174 20 N -0.527 5.527 21 Si 0.896 3.104 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.209 1.209 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.194 0.806 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.871 -8.139 11.688 14.759 hybrid contribution 0.102 -0.366 2.034 2.070 sum 3.973 -8.506 13.722 16.626 Atomic orbital electron populations 1.21736 0.96173 1.01215 1.01629 1.21492 0.94687 0.96849 1.02400 1.22162 0.87378 0.96725 1.00943 1.61997 1.07281 1.29771 1.25401 1.20995 0.91359 0.99707 0.91806 1.19874 0.96683 0.93012 1.00717 1.20969 0.91965 0.98863 0.98629 1.21124 0.96548 0.96512 1.00948 1.20932 0.98692 0.93858 0.97973 1.21110 0.91188 1.01633 1.03969 1.17470 0.84532 0.88814 0.98773 1.91493 1.59262 1.71265 1.89096 1.22956 0.99362 0.86333 1.00325 1.19485 0.94098 0.86683 0.83328 0.93557 1.86466 1.23073 1.59617 1.68038 1.22461 1.42109 1.03878 1.00471 0.93478 1.25743 0.94778 1.04039 0.92831 1.70596 1.31633 1.13917 1.36595 0.83591 0.75974 0.74732 0.76068 1.21496 1.21564 1.20950 0.93272 0.92545 0.92934 0.90969 0.92706 0.95784 0.89869 0.94093 0.90186 0.85536 0.85647 0.85439 0.85114 0.91537 0.95634 0.80602 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.76 6.01 -26.74 -0.16 -1.92 16 3 C 0.06 0.96 4.83 -3.82 -0.02 0.94 16 4 N -0.52 -9.56 4.25 -236.08 -1.00 -10.56 16 5 C 0.09 1.37 4.67 -4.98 -0.02 1.35 16 6 C -0.10 -1.52 4.90 -104.56 -0.51 -2.03 16 7 C -0.09 -1.14 8.79 -39.59 -0.35 -1.49 16 8 C -0.13 -1.55 10.04 -39.58 -0.40 -1.95 16 9 C -0.10 -1.08 10.04 -39.59 -0.40 -1.48 16 10 C -0.16 -2.04 10.03 -39.52 -0.40 -2.44 16 11 C 0.12 1.87 7.25 -39.42 -0.29 1.59 16 12 F -0.13 -2.17 16.69 2.25 0.04 -2.14 16 13 C 0.04 0.79 4.38 -3.83 -0.02 0.77 16 14 C 0.22 5.63 2.34 -27.88 -0.07 5.57 16 15 H 0.05 1.28 6.15 -51.93 -0.32 0.96 16 16 O -0.57 -14.88 11.88 -35.23 -0.42 -15.29 16 17 C -0.65 -18.20 8.76 -34.44 -0.30 -18.50 16 18 H 0.05 1.30 7.74 -52.48 -0.41 0.89 16 19 C 0.03 1.01 5.40 -17.82 -0.10 0.91 16 20 N -0.89 -27.52 13.53 55.43 0.75 -26.77 16 21 Si 1.07 25.21 29.90 -169.99 -5.08 20.12 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.05 0.78 6.52 -51.93 -0.34 0.44 16 30 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 31 H 0.08 1.65 5.94 -51.93 -0.31 1.34 16 32 H 0.04 0.59 7.84 -51.93 -0.41 0.19 16 33 H 0.08 1.17 6.09 -51.93 -0.32 0.85 16 34 H 0.13 1.55 8.02 -52.49 -0.42 1.12 16 35 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.07 1.39 6.72 -51.93 -0.35 1.04 16 39 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 40 H 0.35 8.54 9.04 45.56 0.41 8.95 16 41 H 0.29 8.98 6.47 -40.82 -0.26 8.72 16 LS Contribution 338.38 15.07 5.10 5.10 Total: -1.00 -31.32 338.38 -8.58 -39.90 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.31 Total: 9.86 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -2.65 Total: -20.23 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.25 Total: -37.33 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.42 Total: -15.29 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.12 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.32 -8.58 -39.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929384628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.005 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds