Wall clock time and date at job start Tue Mar 31 2020 05:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46921 * 2 1 4 4 C 1.53004 * 109.47242 * 119.99663 * 2 1 3 5 5 H 1.08998 * 109.47270 * 179.25493 * 4 2 1 6 6 N 1.46899 * 109.46929 * 59.25558 * 4 2 1 7 7 C 1.46898 * 111.00150 * 83.91946 * 6 4 2 8 8 C 1.52994 * 109.47183 * 180.20954 * 7 6 4 9 9 H 1.08998 * 109.47306 * 60.00001 * 8 7 6 10 10 O 1.42905 * 109.47247 * 300.00270 * 8 7 6 11 11 C 1.50702 * 109.47297 * 180.02562 * 8 7 6 12 12 H 1.07999 * 119.99740 * 0.02562 * 11 8 7 13 13 C 1.37877 * 120.00256 * 180.02562 * 11 8 7 14 14 N 1.31513 * 119.99821 * 359.97438 * 13 11 8 15 15 Si 1.86796 * 120.00037 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47536 * 89.99730 * 15 13 11 17 17 H 1.48502 * 109.46920 * 209.99965 * 15 13 11 18 18 H 1.48503 * 109.46926 * 329.99757 * 15 13 11 19 19 C 1.50698 * 109.47082 * 299.25650 * 4 2 1 20 20 C 1.38247 * 119.97345 * 259.99732 * 19 4 2 21 21 C 1.38197 * 120.02922 * 180.02562 * 20 19 4 22 22 C 1.38459 * 119.96937 * 359.97438 * 21 20 19 23 23 F 1.35102 * 120.02548 * 179.97438 * 22 21 20 24 24 C 1.38462 * 119.95151 * 0.26098 * 22 21 20 25 25 C 1.38196 * 119.97052 * 359.46581 * 24 22 21 26 26 H 1.08995 * 109.47571 * 299.99611 * 1 2 3 27 27 H 1.09002 * 109.47372 * 60.00424 * 1 2 3 28 28 H 1.09002 * 109.46752 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47571 * 240.00389 * 2 1 3 30 30 H 1.08998 * 109.47157 * 173.77013 * 3 2 1 31 31 H 1.09001 * 109.46795 * 293.77351 * 3 2 1 32 32 H 1.09007 * 109.46854 * 53.77140 * 3 2 1 33 33 H 1.00903 * 110.99810 * 207.87963 * 6 4 2 34 34 H 1.08999 * 109.46917 * 300.21291 * 7 6 4 35 35 H 1.09002 * 109.47071 * 60.21275 * 7 6 4 36 36 H 0.96698 * 113.99533 * 300.00008 * 10 8 7 37 37 H 0.97005 * 120.00074 * 180.02562 * 14 13 11 38 38 H 1.08004 * 119.98792 * 0.02562 * 20 19 4 39 39 H 1.07998 * 120.01632 * 180.02562 * 21 20 19 40 40 H 1.08005 * 120.00979 * 179.74261 * 24 22 21 41 41 H 1.08000 * 119.98412 * 180.30052 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1299 -0.7328 1.2427 6 7 1.5357 -2.1009 1.2584 7 6 2.3910 -2.9794 0.4493 8 6 1.8321 -4.4033 0.4786 9 1 0.8210 -4.4053 0.0716 10 8 1.8037 -4.8762 1.8269 11 6 2.7099 -5.3047 -0.3509 12 1 3.5796 -4.9022 -0.8489 13 6 2.4026 -6.6431 -0.4741 14 7 1.3438 -7.1333 0.1327 15 14 3.4910 -7.7605 -1.5018 16 1 4.5565 -8.3390 -0.6443 17 1 2.6710 -8.8558 -2.0791 18 1 4.1108 -6.9750 -2.5992 19 6 1.5528 -0.0002 2.4796 20 6 2.3969 0.8618 3.1547 21 6 1.9515 1.5232 4.2834 22 6 0.6590 1.3227 4.7378 23 9 0.2226 1.9683 5.8414 24 6 -0.1839 0.4554 4.0636 25 6 0.2620 -0.2005 2.9319 26 1 -0.3634 0.5137 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5137 -0.8899 30 1 3.1242 1.4446 0.1115 31 1 1.7704 1.9232 -0.9405 32 1 1.5884 1.9875 0.8290 33 1 1.4501 -2.4483 2.2018 34 1 2.4126 -2.6186 -0.5791 35 1 3.4021 -2.9775 0.8563 36 1 2.6713 -4.9013 2.2532 37 1 1.1279 -8.0750 0.0464 38 1 3.4049 1.0184 2.7999 39 1 2.6110 2.1968 4.8104 40 1 -1.1910 0.2951 4.4196 41 1 -0.3970 -0.8733 2.4032 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929861167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:43 Heat of formation + Delta-G solvation = -102.913774 kcal Electronic energy + Delta-G solvation = -22234.948329 eV Core-core repulsion = 18834.784049 eV Total energy + Delta-G solvation = -3400.164280 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.86728 -40.85181 -38.44162 -37.17045 -34.35600 -34.05649 -32.14404 -31.60614 -29.70905 -27.95183 -26.87774 -25.05811 -23.81920 -22.99509 -22.23453 -20.31281 -18.96174 -18.55682 -17.39726 -17.31165 -16.64002 -16.61884 -16.30917 -16.06106 -15.93169 -15.42266 -15.08899 -14.74133 -14.46523 -14.40995 -14.15946 -13.98863 -13.32091 -13.13482 -13.10266 -12.92785 -12.83582 -12.77263 -12.66555 -12.45797 -12.04210 -11.88711 -11.77027 -11.69300 -11.29416 -10.99033 -10.69988 -10.14701 -9.98335 -9.48541 -9.19220 -8.12008 -6.37610 0.17174 0.32438 1.41217 1.42140 1.52677 2.39660 2.63553 3.14061 3.30444 3.32531 3.67725 3.86135 4.01007 4.11040 4.20764 4.32761 4.41588 4.43073 4.44523 4.56755 4.61681 4.69294 4.89371 4.91212 5.00556 5.05831 5.13250 5.15755 5.17746 5.19826 5.30150 5.33875 5.52761 5.58057 5.61284 5.64711 5.78548 5.95829 6.06004 6.28260 6.58334 6.77077 7.35450 7.57303 8.92418 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024577 B = 0.003843 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.982695 B = 7283.552470 C = 7824.839752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 C -0.140 4.140 4 C 0.132 3.868 5 H 0.051 0.949 6 N -0.678 5.678 7 C 0.059 3.941 8 C 0.235 3.765 9 H 0.023 0.977 10 O -0.578 6.578 11 C -0.587 4.587 12 H 0.059 0.941 13 C 0.027 3.973 14 N -0.899 5.899 15 Si 0.958 3.042 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.265 1.265 19 C -0.090 4.090 20 C -0.083 4.083 21 C -0.153 4.153 22 C 0.077 3.923 23 F -0.150 7.150 24 C -0.160 4.160 25 C -0.076 4.076 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.342 0.658 34 H 0.063 0.937 35 H 0.023 0.977 36 H 0.353 0.647 37 H 0.260 0.740 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.143 0.857 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.942 18.968 4.981 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C -0.197 4.197 4 C 0.023 3.977 5 H 0.068 0.932 6 N -0.310 5.310 7 C -0.071 4.071 8 C 0.177 3.823 9 H 0.040 0.960 10 O -0.381 6.381 11 C -0.625 4.625 12 H 0.077 0.923 13 C -0.176 4.176 14 N -0.536 5.536 15 Si 0.783 3.217 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.189 1.189 19 C -0.091 4.091 20 C -0.101 4.101 21 C -0.171 4.171 22 C 0.058 3.942 23 F -0.129 7.129 24 C -0.179 4.179 25 C -0.094 4.094 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.161 0.839 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.197 0.803 37 H 0.069 0.931 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.161 0.839 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.712 18.903 4.410 19.424 hybrid contribution 1.460 -0.948 0.285 1.764 sum 2.172 17.955 4.695 18.686 Atomic orbital electron populations 1.21803 0.94938 1.01600 1.01179 1.21036 0.96771 0.96031 0.96144 1.21809 1.01118 0.94707 1.02097 1.20528 0.96629 0.87932 0.92614 0.93158 1.60489 1.51754 1.01027 1.17757 1.22437 0.93291 0.93945 0.97408 1.19204 0.94997 0.87928 0.80184 0.95957 1.86529 1.33134 1.89537 1.28911 1.22050 1.12445 0.95006 1.33011 0.92293 1.25878 0.95982 0.99931 0.95801 1.70222 1.26888 1.13919 1.42598 0.85588 0.78706 0.78346 0.79096 1.19854 1.21042 1.18890 1.19964 0.94431 0.98246 0.96455 1.21095 1.00364 0.94923 0.93760 1.21290 0.94443 1.02834 0.98553 1.17938 0.94494 0.96094 0.85655 1.91468 1.90153 1.80057 1.51188 1.21313 1.01193 0.98391 0.96985 1.21045 0.95804 0.97942 0.94619 0.92250 0.93051 0.93220 0.92327 0.92107 0.92076 0.92425 0.83871 0.91806 0.95923 0.80309 0.93068 0.83295 0.82876 0.83899 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 7.98 71.98 0.57 -2.86 16 2 C -0.08 -1.95 2.82 -10.79 -0.03 -1.98 16 3 C -0.14 -2.62 8.58 71.98 0.62 -2.00 16 4 C 0.13 3.39 2.12 44.17 0.09 3.48 16 5 H 0.05 1.27 7.68 -2.39 -0.02 1.25 16 6 N -0.68 -22.16 4.88 -495.46 -2.42 -24.58 16 7 C 0.06 2.27 5.13 86.30 0.44 2.72 16 8 C 0.23 11.72 3.10 29.85 0.09 11.82 16 9 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 10 O -0.58 -29.04 12.07 -148.98 -1.80 -30.83 16 11 C -0.59 -31.74 8.76 25.60 0.22 -31.52 16 12 H 0.06 3.07 7.74 -2.91 -0.02 3.04 16 13 C 0.03 1.47 5.40 84.65 0.46 1.93 16 14 N -0.90 -53.66 12.84 21.45 0.28 -53.38 16 15 Si 0.96 42.95 29.54 68.60 2.03 44.97 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 19 C -0.09 -2.05 3.57 -19.86 -0.07 -2.13 16 20 C -0.08 -1.58 8.87 22.26 0.20 -1.38 16 21 C -0.15 -2.87 10.03 22.31 0.22 -2.64 16 22 C 0.08 1.70 7.30 22.38 0.16 1.86 16 23 F -0.15 -3.48 17.27 44.97 0.78 -2.70 16 24 C -0.16 -3.55 10.03 22.31 0.22 -3.32 16 25 C -0.08 -1.80 6.84 22.26 0.15 -1.64 16 26 H 0.06 1.38 5.59 -2.39 -0.01 1.37 16 27 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.05 1.48 7.58 -2.39 -0.02 1.46 16 29 H 0.06 1.59 7.40 -2.39 -0.02 1.58 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.06 7.05 -2.38 -0.02 1.04 16 33 H 0.34 11.66 7.43 -89.69 -0.67 10.99 16 34 H 0.06 2.49 7.37 -2.39 -0.02 2.47 16 35 H 0.02 0.85 8.06 -2.39 -0.02 0.83 16 36 H 0.35 15.61 9.04 -74.06 -0.67 14.94 16 37 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 38 H 0.15 2.20 8.04 -2.91 -0.02 2.18 16 39 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 40 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 41 H 0.14 3.47 6.87 -2.91 -0.02 3.45 16 Total: -1.00 -61.98 335.27 1.93 -60.05 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: -0.30 Total: 34.14 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 3.36 Total: -27.67 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -2.14 Total: -77.96 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -1.80 Total: -30.83 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.78 Total: -2.70 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -61.98 1.93 -60.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929861167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.863 kcal (2) G-P(sol) polarization free energy of solvation -61.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds