Wall clock time and date at job start Tue Mar 31 2020 05:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47343 * 2 1 4 4 C 1.53002 * 109.46891 * 120.00400 * 2 1 3 5 5 H 1.08992 * 109.47056 * 59.99654 * 4 2 1 6 6 N 1.46906 * 109.47053 * 179.97438 * 4 2 1 7 7 C 1.46903 * 110.99770 * 274.99984 * 6 4 2 8 8 C 1.52998 * 109.46854 * 180.02562 * 7 6 4 9 9 H 1.08995 * 109.47473 * 59.99227 * 8 7 6 10 10 O 1.42901 * 109.46804 * 299.99315 * 8 7 6 11 11 C 1.50702 * 109.47140 * 180.02562 * 8 7 6 12 12 H 1.08001 * 119.99638 * 359.97438 * 11 8 7 13 13 C 1.37876 * 120.00064 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00060 * 359.97438 * 13 11 8 15 15 Si 1.86799 * 119.99625 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.46999 * 90.00267 * 15 13 11 17 17 H 1.48505 * 109.46877 * 209.99713 * 15 13 11 18 18 H 1.48493 * 109.47516 * 329.99982 * 15 13 11 19 19 C 1.50701 * 109.46958 * 299.99596 * 4 2 1 20 20 C 1.38250 * 119.97311 * 279.72631 * 19 4 2 21 21 C 1.38199 * 120.02013 * 179.76893 * 20 19 4 22 22 C 1.38466 * 119.97575 * 0.50590 * 21 20 19 23 23 F 1.35102 * 120.02178 * 179.77051 * 22 21 20 24 24 C 1.38455 * 119.94598 * 359.74963 * 22 21 20 25 25 C 1.38196 * 119.97805 * 359.97438 * 24 22 21 26 26 H 1.09004 * 109.47368 * 59.99791 * 1 2 3 27 27 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47261 * 300.00175 * 1 2 3 29 29 H 1.09004 * 109.47108 * 240.00108 * 2 1 3 30 30 H 1.09002 * 109.47067 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47312 * 299.99943 * 3 2 1 32 32 H 1.09004 * 109.46930 * 59.99999 * 3 2 1 33 33 H 1.00899 * 110.99829 * 38.95133 * 6 4 2 34 34 H 1.09005 * 109.46479 * 299.99747 * 7 6 4 35 35 H 1.08996 * 109.47267 * 59.99984 * 7 6 4 36 36 H 0.96704 * 114.00649 * 300.00519 * 10 8 7 37 37 H 0.96997 * 119.99893 * 180.02562 * 14 13 11 38 38 H 1.07999 * 119.98916 * 0.02562 * 20 19 4 39 39 H 1.08001 * 120.01186 * 180.25931 * 21 20 19 40 40 H 1.08000 * 120.01077 * 179.97438 * 24 22 21 41 41 H 1.07993 * 119.98742 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7214 1.2492 5 1 1.6765 -1.7489 1.2492 6 7 3.5090 -0.7219 1.2490 7 6 4.0348 -1.8456 0.4623 8 6 5.5642 -1.8131 0.4860 9 1 5.9136 -1.8951 1.5152 10 8 6.0232 -0.5821 -0.0763 11 6 6.1037 -2.9655 -0.3215 12 1 5.4237 -3.6526 -0.8031 13 6 7.4654 -3.1427 -0.4456 14 7 8.2935 -2.3057 0.1404 15 14 8.1340 -4.5715 -1.4459 16 1 8.3112 -4.1472 -2.8580 17 1 9.4434 -4.9961 -0.8887 18 1 7.1791 -5.7072 -1.3865 19 6 1.5376 -0.0109 2.4797 20 6 2.1759 1.1310 2.9269 21 6 1.7132 1.7859 4.0524 22 6 0.6163 1.2922 4.7383 23 9 0.1660 1.9291 5.8414 24 6 -0.0188 0.1455 4.2924 25 6 0.4422 -0.5046 3.1634 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.8708 0.1571 0.9105 34 1 3.6850 -2.7846 0.8914 35 1 3.6851 -1.7638 -0.5668 36 1 5.7489 -0.4418 -0.9929 37 1 9.2515 -2.4301 0.0528 38 1 3.0338 1.5136 2.3941 39 1 2.2093 2.6804 4.3992 40 1 -0.8741 -0.2408 4.8268 41 1 -0.0533 -1.3988 2.8153 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929861168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:46 Heat of formation + Delta-G solvation = -83.546979 kcal Electronic energy + Delta-G solvation = -22258.593357 eV Core-core repulsion = 18859.268884 eV Total energy + Delta-G solvation = -3399.324473 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.87453 -39.88800 -37.23506 -35.66271 -32.71745 -32.10806 -31.21291 -30.51748 -28.05552 -27.24680 -25.38505 -23.60451 -22.78067 -21.92602 -20.52849 -19.52499 -17.63466 -17.00052 -16.34313 -16.08310 -15.59154 -15.32458 -14.74402 -14.59037 -14.36875 -14.21530 -13.92598 -13.62349 -13.50215 -13.08711 -12.84767 -12.51278 -12.19466 -12.15948 -12.06043 -11.75670 -11.47663 -11.06897 -11.00128 -10.94233 -10.83206 -10.70526 -10.66663 -10.53348 -10.10594 -9.05405 -9.03956 -8.59909 -8.48847 -8.20080 -7.79667 -6.01753 -4.20255 1.18867 1.27177 3.26321 3.33795 3.36182 3.61272 4.28275 4.34480 4.55335 4.77223 4.84118 4.88426 4.92388 5.04293 5.21547 5.25648 5.33266 5.39182 5.60386 5.65101 5.69011 5.84670 5.90293 5.95446 6.01272 6.09839 6.10914 6.13474 6.21638 6.25673 6.27494 6.38985 6.43581 6.61338 6.86027 6.92298 7.49570 7.74612 7.82489 7.97217 8.20849 8.83154 9.35457 9.56720 11.02482 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024561 B = 0.003792 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.758671 B = 7381.571565 C = 7772.126809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.157 4.157 4 C 0.125 3.875 5 H 0.083 0.917 6 N -0.679 5.679 7 C 0.036 3.964 8 C 0.232 3.768 9 H 0.064 0.936 10 O -0.565 6.565 11 C -0.574 4.574 12 H 0.054 0.946 13 C 0.080 3.920 14 N -0.858 5.858 15 Si 0.889 3.111 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.061 4.061 20 C -0.067 4.067 21 C -0.156 4.156 22 C 0.085 3.915 23 F -0.147 7.147 24 C -0.157 4.157 25 C -0.090 4.090 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.345 0.655 34 H 0.064 0.936 35 H 0.019 0.981 36 H 0.340 0.660 37 H 0.260 0.740 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.777 6.867 3.052 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.142 4.142 3 C -0.214 4.214 4 C 0.015 3.985 5 H 0.101 0.899 6 N -0.312 5.312 7 C -0.093 4.093 8 C 0.174 3.826 9 H 0.081 0.919 10 O -0.367 6.367 11 C -0.612 4.612 12 H 0.073 0.927 13 C -0.126 4.126 14 N -0.493 5.493 15 Si 0.716 3.284 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.062 4.062 20 C -0.085 4.085 21 C -0.175 4.175 22 C 0.065 3.935 23 F -0.125 7.125 24 C -0.175 4.175 25 C -0.108 4.108 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.167 0.833 34 H 0.083 0.917 35 H 0.037 0.963 36 H 0.183 0.817 37 H 0.070 0.930 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.248 6.665 4.351 18.092 hybrid contribution -0.094 -0.608 -1.766 1.870 sum -16.342 6.056 2.585 17.618 Atomic orbital electron populations 1.21824 0.95121 1.01544 1.01722 1.21747 0.96331 0.97150 0.98952 1.22038 1.01477 0.95888 1.02028 1.20560 0.89862 0.98073 0.90042 0.89881 1.60670 1.03689 1.08065 1.58740 1.22881 1.00225 0.92543 0.93604 1.19423 0.84846 0.82762 0.95542 0.91859 1.86593 1.79618 1.41856 1.28630 1.21622 0.92029 1.13011 1.34536 0.92730 1.25025 0.97131 0.95566 0.94895 1.70080 1.02626 1.35254 1.41357 0.86680 0.78488 0.82858 0.80376 1.20593 1.21090 1.19846 1.19895 0.94532 0.95111 0.96616 1.20927 0.98654 0.94246 0.94708 1.21152 0.96950 1.02121 0.97261 1.17703 0.96369 0.93711 0.85679 1.91470 1.88698 1.81321 1.51055 1.21020 1.01909 0.95796 0.98812 1.20852 0.96248 0.99517 0.94212 0.92997 0.92835 0.92371 0.90730 0.91978 0.92740 0.91886 0.83287 0.91704 0.96299 0.81683 0.92986 0.84717 0.85052 0.85214 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.78 37.16 0.33 -1.11 16 2 C -0.12 -1.42 2.82 -90.62 -0.26 -1.68 16 3 C -0.16 -1.76 7.85 37.16 0.29 -1.47 16 4 C 0.13 1.67 2.15 -68.86 -0.15 1.52 16 5 H 0.08 1.12 7.66 -51.93 -0.40 0.73 16 6 N -0.68 -11.27 5.70 -107.95 -0.62 -11.89 16 7 C 0.04 0.71 5.13 -3.82 -0.02 0.69 16 8 C 0.23 5.70 3.10 -27.88 -0.09 5.62 16 9 H 0.06 1.77 8.14 -51.93 -0.42 1.35 16 10 O -0.57 -13.84 12.06 -35.23 -0.43 -14.27 16 11 C -0.57 -15.45 8.76 -34.44 -0.30 -15.75 16 12 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 13 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 14 N -0.86 -25.17 12.84 55.43 0.71 -24.46 16 15 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 19 C -0.06 -0.76 3.80 -104.62 -0.40 -1.16 16 20 C -0.07 -0.85 7.11 -39.59 -0.28 -1.13 16 21 C -0.16 -1.88 10.03 -39.51 -0.40 -2.28 16 22 C 0.08 1.04 7.30 -39.42 -0.29 0.75 16 23 F -0.15 -1.87 17.27 2.25 0.04 -1.83 16 24 C -0.16 -1.75 10.03 -39.52 -0.40 -2.15 16 25 C -0.09 -1.01 8.70 -39.59 -0.34 -1.36 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.58 6.64 -51.93 -0.34 0.24 16 29 H 0.07 0.95 7.45 -51.93 -0.39 0.57 16 30 H 0.06 0.75 6.26 -51.93 -0.32 0.43 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.68 5.62 -51.93 -0.29 0.39 16 33 H 0.35 5.70 5.01 -39.29 -0.20 5.50 16 34 H 0.06 1.28 8.06 -51.93 -0.42 0.86 16 35 H 0.02 0.35 7.43 -51.93 -0.39 -0.03 16 36 H 0.34 7.38 9.04 45.56 0.41 7.79 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.14 1.70 6.43 -52.49 -0.34 1.36 16 39 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 41 H 0.13 1.20 8.04 -52.49 -0.42 0.78 16 LS Contribution 332.04 15.07 5.00 5.00 Total: -1.00 -29.50 332.04 -7.87 -37.37 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -5.17 Total: 11.53 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -2.39 Total: -17.37 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.10 Total: -36.35 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.43 Total: -14.27 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.50 -7.87 -37.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929861168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.178 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds