Wall clock time and date at job start Tue Mar 31 2020 05:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47343 * 2 1 4 4 C 1.53002 * 109.46891 * 120.00400 * 2 1 3 5 5 H 1.08992 * 109.47056 * 59.99654 * 4 2 1 6 6 N 1.46906 * 109.47053 * 179.97438 * 4 2 1 7 7 C 1.46903 * 110.99770 * 274.99984 * 6 4 2 8 8 C 1.52998 * 109.46854 * 180.02562 * 7 6 4 9 9 H 1.08995 * 109.47473 * 59.99227 * 8 7 6 10 10 O 1.42901 * 109.46804 * 299.99315 * 8 7 6 11 11 C 1.50702 * 109.47140 * 180.02562 * 8 7 6 12 12 H 1.08001 * 119.99638 * 359.97438 * 11 8 7 13 13 C 1.37876 * 120.00064 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00060 * 359.97438 * 13 11 8 15 15 Si 1.86799 * 119.99625 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.46999 * 90.00267 * 15 13 11 17 17 H 1.48505 * 109.46877 * 209.99713 * 15 13 11 18 18 H 1.48493 * 109.47516 * 329.99982 * 15 13 11 19 19 C 1.50701 * 109.46958 * 299.99596 * 4 2 1 20 20 C 1.38250 * 119.97311 * 279.72631 * 19 4 2 21 21 C 1.38199 * 120.02013 * 179.76893 * 20 19 4 22 22 C 1.38466 * 119.97575 * 0.50590 * 21 20 19 23 23 F 1.35102 * 120.02178 * 179.77051 * 22 21 20 24 24 C 1.38455 * 119.94598 * 359.74963 * 22 21 20 25 25 C 1.38196 * 119.97805 * 359.97438 * 24 22 21 26 26 H 1.09004 * 109.47368 * 59.99791 * 1 2 3 27 27 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47261 * 300.00175 * 1 2 3 29 29 H 1.09004 * 109.47108 * 240.00108 * 2 1 3 30 30 H 1.09002 * 109.47067 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47312 * 299.99943 * 3 2 1 32 32 H 1.09004 * 109.46930 * 59.99999 * 3 2 1 33 33 H 1.00899 * 110.99829 * 38.95133 * 6 4 2 34 34 H 1.09005 * 109.46479 * 299.99747 * 7 6 4 35 35 H 1.08996 * 109.47267 * 59.99984 * 7 6 4 36 36 H 0.96704 * 114.00649 * 300.00519 * 10 8 7 37 37 H 0.96997 * 119.99893 * 180.02562 * 14 13 11 38 38 H 1.07999 * 119.98916 * 0.02562 * 20 19 4 39 39 H 1.08001 * 120.01186 * 180.25931 * 21 20 19 40 40 H 1.08000 * 120.01077 * 179.97438 * 24 22 21 41 41 H 1.07993 * 119.98742 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7214 1.2492 5 1 1.6765 -1.7489 1.2492 6 7 3.5090 -0.7219 1.2490 7 6 4.0348 -1.8456 0.4623 8 6 5.5642 -1.8131 0.4860 9 1 5.9136 -1.8951 1.5152 10 8 6.0232 -0.5821 -0.0763 11 6 6.1037 -2.9655 -0.3215 12 1 5.4237 -3.6526 -0.8031 13 6 7.4654 -3.1427 -0.4456 14 7 8.2935 -2.3057 0.1404 15 14 8.1340 -4.5715 -1.4459 16 1 8.3112 -4.1472 -2.8580 17 1 9.4434 -4.9961 -0.8887 18 1 7.1791 -5.7072 -1.3865 19 6 1.5376 -0.0109 2.4797 20 6 2.1759 1.1310 2.9269 21 6 1.7132 1.7859 4.0524 22 6 0.6163 1.2922 4.7383 23 9 0.1660 1.9291 5.8414 24 6 -0.0188 0.1455 4.2924 25 6 0.4422 -0.5046 3.1634 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.8708 0.1571 0.9105 34 1 3.6850 -2.7846 0.8914 35 1 3.6851 -1.7638 -0.5668 36 1 5.7489 -0.4418 -0.9929 37 1 9.2515 -2.4301 0.0528 38 1 3.0338 1.5136 2.3941 39 1 2.2093 2.6804 4.3992 40 1 -0.8741 -0.2408 4.8268 41 1 -0.0533 -1.3988 2.8153 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929861168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:45 Heat of formation + Delta-G solvation = -102.388798 kcal Electronic energy + Delta-G solvation = -22259.410399 eV Core-core repulsion = 18859.268884 eV Total energy + Delta-G solvation = -3400.141515 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.83734 -40.88815 -38.54383 -37.24107 -34.29427 -33.95412 -32.12255 -31.56419 -29.75999 -28.13607 -26.88296 -25.03130 -23.79566 -22.88072 -22.28797 -20.51966 -19.00281 -18.59196 -17.49883 -17.15222 -16.63965 -16.56388 -16.36977 -16.07801 -15.92784 -15.35900 -15.09854 -14.97054 -14.45174 -14.40482 -14.07105 -13.77588 -13.38661 -13.22987 -13.05009 -12.95654 -12.90072 -12.78087 -12.75162 -12.45245 -12.02995 -11.99081 -11.81632 -11.66411 -11.48943 -11.01154 -10.70252 -10.14949 -9.94930 -9.45206 -9.12688 -8.12044 -6.37786 0.23829 0.36511 1.41272 1.42375 1.52885 2.39647 2.67142 3.14070 3.35720 3.36946 3.82073 3.84869 3.94583 4.04864 4.10426 4.26791 4.31359 4.42919 4.44761 4.54414 4.62592 4.72031 4.80406 4.83189 4.99019 5.02361 5.07644 5.08723 5.15193 5.22804 5.24875 5.35311 5.37843 5.47453 5.62532 5.64808 5.78968 5.99811 6.06109 6.28088 6.59901 6.77040 7.35302 7.56991 8.92440 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024561 B = 0.003792 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.758671 B = 7381.571565 C = 7772.126809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.117 4.117 3 C -0.154 4.154 4 C 0.128 3.872 5 H 0.084 0.916 6 N -0.687 5.687 7 C 0.058 3.942 8 C 0.233 3.767 9 H 0.020 0.980 10 O -0.577 6.577 11 C -0.586 4.586 12 H 0.060 0.940 13 C 0.026 3.974 14 N -0.900 5.900 15 Si 0.959 3.041 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.265 1.265 19 C -0.069 4.069 20 C -0.078 4.078 21 C -0.161 4.161 22 C 0.071 3.929 23 F -0.151 7.151 24 C -0.152 4.152 25 C -0.088 4.088 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.345 0.655 34 H 0.062 0.938 35 H 0.028 0.972 36 H 0.353 0.647 37 H 0.260 0.740 38 H 0.129 0.871 39 H 0.142 0.858 40 H 0.153 0.847 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.540 6.223 2.397 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.137 4.137 3 C -0.211 4.211 4 C 0.018 3.982 5 H 0.102 0.898 6 N -0.320 5.320 7 C -0.072 4.072 8 C 0.176 3.824 9 H 0.038 0.962 10 O -0.380 6.380 11 C -0.625 4.625 12 H 0.078 0.922 13 C -0.176 4.176 14 N -0.537 5.537 15 Si 0.783 3.217 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.189 1.189 19 C -0.070 4.070 20 C -0.096 4.096 21 C -0.180 4.180 22 C 0.052 3.948 23 F -0.130 7.130 24 C -0.171 4.171 25 C -0.106 4.106 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.167 0.833 34 H 0.080 0.920 35 H 0.046 0.954 36 H 0.197 0.803 37 H 0.069 0.931 38 H 0.147 0.853 39 H 0.160 0.840 40 H 0.170 0.830 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.039 6.023 3.688 19.372 hybrid contribution 0.422 -0.355 -1.515 1.612 sum -17.617 5.668 2.174 18.634 Atomic orbital electron populations 1.21774 0.93373 1.02267 1.02227 1.21678 0.97724 0.96881 0.97437 1.22006 1.00532 0.95876 1.02712 1.20578 0.87527 0.98627 0.91435 0.89763 1.60579 1.06131 1.07098 1.58174 1.22424 0.96555 0.93596 0.94576 1.19213 0.88089 0.82262 0.92885 0.96248 1.86525 1.80216 1.41631 1.29649 1.22046 0.92457 1.13643 1.34320 0.92177 1.25888 0.97572 0.98179 0.95994 1.70223 1.02835 1.37426 1.43181 0.85577 0.77659 0.79602 0.78830 1.19782 1.21104 1.18880 1.19880 0.95296 0.95209 0.96586 1.20929 0.98809 0.94720 0.95164 1.21282 0.97079 1.02531 0.97075 1.17908 0.96756 0.94337 0.85775 1.91458 1.88748 1.81499 1.51286 1.21280 1.02177 0.95051 0.98585 1.21073 0.95705 0.99996 0.93846 0.92112 0.92022 0.92227 0.91753 0.93394 0.91660 0.91571 0.83314 0.91964 0.95387 0.80280 0.93069 0.85327 0.84029 0.82968 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.78 71.98 0.63 -1.79 16 2 C -0.12 -2.56 2.82 -10.79 -0.03 -2.59 16 3 C -0.15 -3.29 7.85 71.98 0.57 -2.72 16 4 C 0.13 3.26 2.15 44.17 0.09 3.36 16 5 H 0.08 2.13 7.66 -2.39 -0.02 2.11 16 6 N -0.69 -22.73 5.70 -495.44 -2.82 -25.55 16 7 C 0.06 2.24 5.13 86.30 0.44 2.69 16 8 C 0.23 11.70 3.10 29.85 0.09 11.79 16 9 H 0.02 1.14 8.14 -2.39 -0.02 1.13 16 10 O -0.58 -28.78 12.06 -148.98 -1.80 -30.58 16 11 C -0.59 -31.69 8.76 25.60 0.22 -31.46 16 12 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 13 C 0.03 1.45 5.40 84.65 0.46 1.91 16 14 N -0.90 -53.72 12.84 21.45 0.28 -53.45 16 15 Si 0.96 42.90 29.54 68.60 2.03 44.92 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 19 C -0.07 -1.63 3.80 -19.86 -0.08 -1.71 16 20 C -0.08 -1.92 7.11 22.26 0.16 -1.76 16 21 C -0.16 -3.75 10.03 22.31 0.22 -3.53 16 22 C 0.07 1.66 7.30 22.38 0.16 1.82 16 23 F -0.15 -3.67 17.27 44.97 0.78 -2.89 16 24 C -0.15 -3.05 10.03 22.31 0.22 -2.83 16 25 C -0.09 -1.77 8.70 22.26 0.19 -1.58 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 1.03 6.64 -2.39 -0.02 1.02 16 29 H 0.06 1.55 7.45 -2.38 -0.02 1.53 16 30 H 0.05 1.15 6.26 -2.39 -0.01 1.14 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.37 5.62 -2.38 -0.01 1.36 16 33 H 0.34 11.49 5.01 -89.69 -0.45 11.04 16 34 H 0.06 2.43 8.06 -2.38 -0.02 2.41 16 35 H 0.03 1.03 7.43 -2.39 -0.02 1.01 16 36 H 0.35 15.41 9.04 -74.05 -0.67 14.74 16 37 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 38 H 0.13 3.26 6.43 -2.91 -0.02 3.25 16 39 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 40 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 41 H 0.15 2.33 8.04 -2.91 -0.02 2.31 16 Total: -1.00 -63.02 332.04 1.75 -61.27 By element: Atomic # 1 Polarization: 34.76 SS G_CDS: -0.08 Total: 34.68 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 3.37 Total: -28.40 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -2.55 Total: -79.00 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -1.80 Total: -30.58 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.78 Total: -2.89 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -63.02 1.75 -61.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929861168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.121 kcal (2) G-P(sol) polarization free energy of solvation -63.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds