Wall clock time and date at job start Tue Mar 31 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47284 * 2 1 4 4 C 1.52992 * 109.47092 * 239.99408 * 2 1 3 5 5 C 1.50699 * 109.47475 * 63.08662 * 4 2 1 6 6 C 1.38268 * 119.98911 * 84.09140 * 5 4 2 7 7 C 1.38222 * 120.05538 * 180.02562 * 6 5 4 8 8 C 1.38221 * 120.02450 * 359.96113 * 7 6 5 9 9 C 1.38439 * 119.97127 * 0.02562 * 8 7 6 10 10 F 1.35100 * 120.02423 * 179.97438 * 9 8 7 11 11 C 1.38177 * 119.98606 * 263.82453 * 5 4 2 12 12 N 1.46907 * 109.47163 * 119.99365 * 2 1 3 13 13 C 1.46897 * 110.99927 * 174.49833 * 12 2 1 14 14 C 1.46902 * 111.00082 * 298.45289 * 12 2 1 15 15 C 1.52995 * 109.47159 * 170.00027 * 14 12 2 16 16 H 1.08996 * 109.47388 * 59.99801 * 15 14 12 17 17 O 1.42898 * 109.47001 * 299.99814 * 15 14 12 18 18 C 1.50699 * 109.47171 * 179.97438 * 15 14 12 19 19 H 1.07999 * 120.00046 * 359.97438 * 18 15 14 20 20 C 1.37878 * 120.00159 * 179.97438 * 18 15 14 21 21 N 1.31515 * 119.99795 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 120.00148 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.46960 * 60.00383 * 22 20 18 24 24 H 1.48499 * 109.47243 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47548 * 300.00541 * 22 20 18 26 26 H 1.08993 * 109.47083 * 60.00561 * 1 2 3 27 27 H 1.09004 * 109.46916 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47227 * 299.99898 * 1 2 3 29 29 H 1.09007 * 109.47114 * 183.08561 * 4 2 1 30 30 H 1.08997 * 109.47778 * 303.08182 * 4 2 1 31 31 H 1.08007 * 119.97408 * 0.02562 * 6 5 4 32 32 H 1.07994 * 119.98779 * 179.97438 * 7 6 5 33 33 H 1.07995 * 120.01428 * 180.02562 * 8 7 6 34 34 H 1.07993 * 120.01541 * 359.97224 * 11 5 4 35 35 H 1.08997 * 109.47214 * 177.02134 * 13 12 2 36 36 H 1.09002 * 109.46938 * 297.01639 * 13 12 2 37 37 H 1.09000 * 109.47288 * 57.01905 * 13 12 2 38 38 H 1.08998 * 109.46712 * 290.00038 * 14 12 2 39 39 H 1.08996 * 109.47133 * 49.99672 * 14 12 2 40 40 H 0.96702 * 114.00781 * 300.00007 * 17 15 14 41 41 H 0.97002 * 120.00266 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6011 0.0317 -2.4785 6 6 2.3450 1.1044 -2.9341 7 6 1.9435 1.7964 -4.0613 8 6 0.7979 1.4161 -4.7348 9 6 0.0525 0.3420 -4.2797 10 9 -1.0677 -0.0304 -4.9369 11 6 0.4585 -0.3537 -3.1531 12 7 2.0197 -0.6924 1.1996 13 6 3.4822 -0.8269 1.1696 14 6 1.5792 -0.0051 2.4209 15 6 1.8893 -0.8788 3.6379 16 1 2.9627 -1.0608 3.6905 17 8 1.2003 -2.1249 3.5177 18 6 1.4380 -0.1735 4.8908 19 1 0.9765 0.8007 4.8256 20 6 1.6142 -0.7719 6.1204 21 7 2.1767 -1.9580 6.1998 22 14 1.0554 0.1027 7.6735 23 1 -0.4068 0.3521 7.6022 24 1 1.3564 -0.7454 8.8547 25 1 1.7727 1.3969 7.7982 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.1286 -0.7695 -1.2219 30 1 1.6323 -1.7318 -1.2772 31 1 3.2406 1.4020 -2.4089 32 1 2.5251 2.6343 -4.4160 33 1 0.4846 1.9566 -5.6157 34 1 -0.1198 -1.1945 -2.7999 35 1 3.8230 -1.2953 2.0929 36 1 3.7729 -1.4448 0.3200 37 1 3.9359 0.1595 1.0736 38 1 2.1047 0.9454 2.5125 39 1 0.5058 0.1769 2.3683 40 1 0.2385 -2.0392 3.4657 41 1 2.3011 -2.3789 7.0649 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930701894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:59 Heat of formation + Delta-G solvation = -71.277549 kcal Electronic energy + Delta-G solvation = -21913.566716 eV Core-core repulsion = 18514.774286 eV Total energy + Delta-G solvation = -3398.792430 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.04559 -39.64281 -37.86689 -35.31396 -33.05289 -32.04732 -30.74792 -30.19476 -28.67735 -26.88443 -25.22719 -23.91955 -22.89642 -22.04507 -20.35819 -19.46601 -17.43881 -16.94030 -16.50788 -16.34295 -15.81165 -15.50757 -14.93498 -14.55650 -14.44714 -14.21117 -13.79717 -13.62809 -13.40087 -13.13095 -12.72913 -12.53248 -12.35800 -12.11386 -11.97647 -11.72865 -11.29154 -11.19608 -11.10944 -10.90957 -10.87773 -10.76994 -10.59762 -10.20116 -10.02833 -9.11041 -8.94256 -8.81024 -8.54079 -8.07206 -7.62000 -5.98804 -4.17204 0.97049 1.01850 3.29303 3.34777 3.36129 3.38341 4.02924 4.28072 4.43559 4.57120 4.67524 4.88869 5.01457 5.08123 5.16765 5.22138 5.28659 5.51773 5.66155 5.69294 5.72745 5.86909 5.89576 5.95565 5.97153 6.02906 6.11730 6.18870 6.20028 6.32294 6.37824 6.45547 6.51399 6.63718 6.72058 6.87897 7.56308 7.64921 7.80198 7.91109 8.22691 8.86700 9.48523 9.65160 11.05221 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034599 B = 0.003181 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.073270 B = 8801.187657 C = 8938.712859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.087 3.913 3 H 0.033 0.967 4 C -0.081 4.081 5 C -0.040 4.040 6 C -0.129 4.129 7 C -0.090 4.090 8 C -0.164 4.164 9 C 0.097 3.903 10 F -0.142 7.142 11 C -0.148 4.148 12 N -0.525 5.525 13 C 0.022 3.978 14 C 0.028 3.972 15 C 0.238 3.762 16 H 0.054 0.946 17 O -0.554 6.554 18 C -0.575 4.575 19 H 0.053 0.947 20 C 0.080 3.920 21 N -0.859 5.859 22 Si 0.889 3.111 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.014 0.986 38 H 0.024 0.976 39 H 0.068 0.932 40 H 0.342 0.658 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.522 5.781 -19.910 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 H 0.051 0.949 4 C -0.118 4.118 5 C -0.040 4.040 6 C -0.147 4.147 7 C -0.108 4.108 8 C -0.183 4.183 9 C 0.078 3.922 10 F -0.121 7.121 11 C -0.167 4.167 12 N -0.249 5.249 13 C -0.126 4.126 14 C -0.100 4.100 15 C 0.180 3.820 16 H 0.072 0.928 17 O -0.355 6.355 18 C -0.614 4.614 19 H 0.071 0.929 20 C -0.126 4.126 21 N -0.494 5.494 22 Si 0.716 3.284 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.033 0.967 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.185 0.815 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.074 4.902 -19.785 20.383 hybrid contribution -0.693 1.641 0.764 1.939 sum -0.767 6.543 -19.021 20.129 Atomic orbital electron populations 1.21923 0.94545 1.02613 1.01326 1.21532 0.95839 0.94900 0.89879 0.94916 1.20821 1.01529 0.99288 0.90200 1.19813 0.93359 0.95121 0.95747 1.21158 1.00666 0.95937 0.96971 1.20982 0.95549 0.99298 0.94945 1.21102 0.96925 0.97976 1.02320 1.17727 0.84771 0.96504 0.93187 1.91495 1.49522 1.90969 1.80107 1.21121 0.98419 1.01833 0.95311 1.62063 1.10631 1.50947 1.01290 1.22438 0.88073 0.99076 1.03000 1.23156 0.99850 0.96216 0.90749 1.19312 0.93643 0.81252 0.87835 0.92827 1.86556 1.20162 1.32505 1.96281 1.21633 1.43213 1.04490 0.92057 0.92865 1.25015 0.94151 0.94516 0.98911 1.70070 1.40766 1.13990 1.24586 0.86748 0.79310 0.79616 0.82744 1.20138 1.21196 1.20250 0.92854 0.91679 0.92188 0.90226 0.89714 0.85447 0.85168 0.85071 0.84573 0.90324 0.92106 0.96716 0.95801 0.91376 0.81527 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.64 37.16 0.32 -1.69 16 2 C 0.09 1.24 2.16 -67.71 -0.15 1.09 16 3 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.08 -0.96 4.54 -27.89 -0.13 -1.08 16 5 C -0.04 -0.43 4.47 -104.63 -0.47 -0.90 16 6 C -0.13 -1.25 9.72 -39.58 -0.38 -1.64 16 7 C -0.09 -0.77 10.04 -39.59 -0.40 -1.17 16 8 C -0.16 -1.54 10.03 -39.51 -0.40 -1.93 16 9 C 0.10 1.06 7.30 -39.42 -0.29 0.78 16 10 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 11 C -0.15 -1.62 8.40 -39.51 -0.33 -1.95 16 12 N -0.53 -9.18 4.50 -234.89 -1.06 -10.24 16 13 C 0.02 0.37 8.82 60.06 0.53 0.89 16 14 C 0.03 0.56 4.39 -3.83 -0.02 0.54 16 15 C 0.24 5.96 2.71 -27.89 -0.08 5.89 16 16 H 0.05 1.48 6.42 -51.93 -0.33 1.14 16 17 O -0.55 -14.35 12.60 -35.23 -0.44 -14.80 16 18 C -0.58 -15.74 8.76 -34.44 -0.30 -16.04 16 19 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 20 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 21 N -0.86 -25.37 12.84 55.43 0.71 -24.66 16 22 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H 0.05 0.66 6.52 -51.93 -0.34 0.32 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.88 6.23 -51.93 -0.32 0.56 16 29 H 0.08 0.89 6.20 -51.92 -0.32 0.57 16 30 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 31 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 32 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.08 1.49 6.19 -51.93 -0.32 1.17 16 36 H 0.06 0.85 6.33 -51.93 -0.33 0.52 16 37 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.02 0.49 8.12 -51.93 -0.42 0.07 16 39 H 0.07 1.36 5.89 -51.93 -0.31 1.05 16 40 H 0.34 8.02 9.04 45.56 0.41 8.43 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 335.12 15.07 5.05 5.05 Total: -1.00 -30.31 335.12 -8.10 -38.41 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.20 Total: 6.82 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -2.18 Total: -15.06 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: -0.34 Total: -34.90 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.44 Total: -14.80 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.31 -8.10 -38.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930701894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.869 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds