Wall clock time and date at job start Tue Mar 31 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47284 * 2 1 4 4 C 1.52992 * 109.47092 * 239.99408 * 2 1 3 5 5 C 1.50699 * 109.47475 * 63.08662 * 4 2 1 6 6 C 1.38268 * 119.98911 * 84.09140 * 5 4 2 7 7 C 1.38222 * 120.05538 * 180.02562 * 6 5 4 8 8 C 1.38221 * 120.02450 * 359.96113 * 7 6 5 9 9 C 1.38439 * 119.97127 * 0.02562 * 8 7 6 10 10 F 1.35100 * 120.02423 * 179.97438 * 9 8 7 11 11 C 1.38177 * 119.98606 * 263.82453 * 5 4 2 12 12 N 1.46907 * 109.47163 * 119.99365 * 2 1 3 13 13 C 1.46897 * 110.99927 * 174.49833 * 12 2 1 14 14 C 1.46902 * 111.00082 * 298.45289 * 12 2 1 15 15 C 1.52995 * 109.47159 * 170.00027 * 14 12 2 16 16 H 1.08996 * 109.47388 * 59.99801 * 15 14 12 17 17 O 1.42898 * 109.47001 * 299.99814 * 15 14 12 18 18 C 1.50699 * 109.47171 * 179.97438 * 15 14 12 19 19 H 1.07999 * 120.00046 * 359.97438 * 18 15 14 20 20 C 1.37878 * 120.00159 * 179.97438 * 18 15 14 21 21 N 1.31515 * 119.99795 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 120.00148 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.46960 * 60.00383 * 22 20 18 24 24 H 1.48499 * 109.47243 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47548 * 300.00541 * 22 20 18 26 26 H 1.08993 * 109.47083 * 60.00561 * 1 2 3 27 27 H 1.09004 * 109.46916 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47227 * 299.99898 * 1 2 3 29 29 H 1.09007 * 109.47114 * 183.08561 * 4 2 1 30 30 H 1.08997 * 109.47778 * 303.08182 * 4 2 1 31 31 H 1.08007 * 119.97408 * 0.02562 * 6 5 4 32 32 H 1.07994 * 119.98779 * 179.97438 * 7 6 5 33 33 H 1.07995 * 120.01428 * 180.02562 * 8 7 6 34 34 H 1.07993 * 120.01541 * 359.97224 * 11 5 4 35 35 H 1.08997 * 109.47214 * 177.02134 * 13 12 2 36 36 H 1.09002 * 109.46938 * 297.01639 * 13 12 2 37 37 H 1.09000 * 109.47288 * 57.01905 * 13 12 2 38 38 H 1.08998 * 109.46712 * 290.00038 * 14 12 2 39 39 H 1.08996 * 109.47133 * 49.99672 * 14 12 2 40 40 H 0.96702 * 114.00781 * 300.00007 * 17 15 14 41 41 H 0.97002 * 120.00266 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6011 0.0317 -2.4785 6 6 2.3450 1.1044 -2.9341 7 6 1.9435 1.7964 -4.0613 8 6 0.7979 1.4161 -4.7348 9 6 0.0525 0.3420 -4.2797 10 9 -1.0677 -0.0304 -4.9369 11 6 0.4585 -0.3537 -3.1531 12 7 2.0197 -0.6924 1.1996 13 6 3.4822 -0.8269 1.1696 14 6 1.5792 -0.0051 2.4209 15 6 1.8893 -0.8788 3.6379 16 1 2.9627 -1.0608 3.6905 17 8 1.2003 -2.1249 3.5177 18 6 1.4380 -0.1735 4.8908 19 1 0.9765 0.8007 4.8256 20 6 1.6142 -0.7719 6.1204 21 7 2.1767 -1.9580 6.1998 22 14 1.0554 0.1027 7.6735 23 1 -0.4068 0.3521 7.6022 24 1 1.3564 -0.7454 8.8547 25 1 1.7727 1.3969 7.7982 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.1286 -0.7695 -1.2219 30 1 1.6323 -1.7318 -1.2772 31 1 3.2406 1.4020 -2.4089 32 1 2.5251 2.6343 -4.4160 33 1 0.4846 1.9566 -5.6157 34 1 -0.1198 -1.1945 -2.7999 35 1 3.8230 -1.2953 2.0929 36 1 3.7729 -1.4448 0.3200 37 1 3.9359 0.1595 1.0736 38 1 2.1047 0.9454 2.5125 39 1 0.5058 0.1769 2.3683 40 1 0.2385 -2.0392 3.4657 41 1 2.3011 -2.3789 7.0649 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930701894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:58 Heat of formation + Delta-G solvation = -90.936939 kcal Electronic energy + Delta-G solvation = -21914.419211 eV Core-core repulsion = 18514.774286 eV Total energy + Delta-G solvation = -3399.644925 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.88052 -40.53368 -39.17683 -37.08597 -34.28361 -34.09802 -31.52283 -31.25410 -30.34342 -28.21980 -26.67994 -25.48928 -23.64402 -23.15121 -21.89209 -20.74455 -19.01335 -18.21088 -17.32504 -17.09976 -16.96598 -16.65061 -16.55881 -16.40665 -15.82914 -15.50513 -15.24797 -14.75438 -14.60309 -14.24386 -14.13553 -13.79697 -13.49068 -13.17248 -13.07472 -13.04787 -12.83955 -12.77063 -12.58041 -12.48853 -12.31872 -12.03029 -11.82635 -11.80079 -11.52793 -10.93182 -10.65601 -10.08343 -9.84924 -9.59164 -9.05534 -8.11490 -6.37474 0.20385 0.27762 1.41233 1.42704 1.50865 2.39238 2.61866 3.04018 3.14666 3.31452 3.80482 3.84138 4.02310 4.07998 4.18894 4.28562 4.31690 4.36032 4.41349 4.49302 4.56557 4.66212 4.72544 4.82968 4.88725 4.92110 4.96144 5.02701 5.13368 5.14667 5.19886 5.27323 5.35748 5.40860 5.61368 5.62659 5.79604 5.97279 6.04852 6.25017 6.37601 6.76304 7.36712 7.65430 8.92580 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034599 B = 0.003181 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.073270 B = 8801.187657 C = 8938.712859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.089 3.911 3 H 0.036 0.964 4 C -0.071 4.071 5 C -0.050 4.050 6 C -0.131 4.131 7 C -0.085 4.085 8 C -0.162 4.162 9 C 0.077 3.923 10 F -0.152 7.152 11 C -0.156 4.156 12 N -0.536 5.536 13 C 0.025 3.975 14 C 0.046 3.954 15 C 0.238 3.762 16 H 0.022 0.978 17 O -0.569 6.569 18 C -0.591 4.591 19 H 0.057 0.943 20 C 0.027 3.973 21 N -0.899 5.899 22 Si 0.958 3.042 23 H -0.267 1.267 24 H -0.285 1.285 25 H -0.269 1.269 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.151 0.849 34 H 0.135 0.865 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.027 0.973 38 H 0.020 0.980 39 H 0.073 0.927 40 H 0.351 0.649 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.591 7.477 -21.103 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.019 4.019 3 H 0.053 0.947 4 C -0.109 4.109 5 C -0.050 4.050 6 C -0.149 4.149 7 C -0.103 4.103 8 C -0.181 4.181 9 C 0.058 3.942 10 F -0.130 7.130 11 C -0.175 4.175 12 N -0.261 5.261 13 C -0.123 4.123 14 C -0.082 4.082 15 C 0.180 3.820 16 H 0.040 0.960 17 O -0.372 6.372 18 C -0.629 4.629 19 H 0.076 0.924 20 C -0.176 4.176 21 N -0.536 5.536 22 Si 0.783 3.217 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.194 1.194 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.159 0.841 32 H 0.178 0.822 33 H 0.168 0.832 34 H 0.153 0.847 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.046 0.954 38 H 0.038 0.962 39 H 0.091 0.909 40 H 0.195 0.805 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.150 6.611 -20.997 22.013 hybrid contribution -0.651 1.115 1.047 1.662 sum -0.801 7.726 -19.950 21.409 Atomic orbital electron populations 1.21873 0.94290 1.02305 1.01412 1.21586 0.96010 0.94986 0.89279 0.94656 1.20681 1.01862 0.98807 0.89502 1.19705 0.93826 0.95893 0.95620 1.21406 1.00860 0.95371 0.97304 1.21322 0.95234 0.99631 0.94136 1.21408 0.96689 0.97225 1.02757 1.17958 0.85084 0.97511 0.93622 1.91470 1.50081 1.91190 1.80294 1.21164 0.98663 1.02047 0.95642 1.61981 1.11383 1.51309 1.01414 1.22409 0.87523 0.99990 1.02378 1.22726 1.00091 0.94919 0.90417 1.19180 0.91786 0.81473 0.89599 0.96042 1.86501 1.20981 1.33257 1.96440 1.22053 1.42811 1.04746 0.93268 0.92450 1.25880 0.94150 0.95161 1.02396 1.70214 1.42283 1.15723 1.25352 0.85636 0.79162 0.78495 0.78414 1.19202 1.21036 1.19376 0.91360 0.92200 0.93392 0.89418 0.90290 0.84086 0.82216 0.83157 0.84748 0.93626 0.89499 0.95423 0.96168 0.90903 0.80522 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 8.64 71.98 0.62 -3.11 16 2 C 0.09 2.41 2.16 44.91 0.10 2.51 16 3 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.07 -1.56 4.54 29.84 0.14 -1.43 16 5 C -0.05 -0.98 4.47 -19.87 -0.09 -1.07 16 6 C -0.13 -2.17 9.72 22.27 0.22 -1.96 16 7 C -0.09 -1.19 10.04 22.26 0.22 -0.97 16 8 C -0.16 -2.61 10.03 22.31 0.22 -2.38 16 9 C 0.08 1.58 7.30 22.38 0.16 1.74 16 10 F -0.15 -3.42 17.27 44.97 0.78 -2.65 16 11 C -0.16 -3.22 8.40 22.31 0.19 -3.04 16 12 N -0.54 -18.52 4.50 -897.06 -4.03 -22.55 16 13 C 0.02 0.81 8.82 127.69 1.13 1.93 16 14 C 0.05 1.89 4.39 86.30 0.38 2.27 16 15 C 0.24 12.19 2.71 29.85 0.08 12.27 16 16 H 0.02 1.25 6.42 -2.39 -0.02 1.23 16 17 O -0.57 -30.16 12.60 -148.98 -1.88 -32.03 16 18 C -0.59 -32.57 8.76 25.60 0.22 -32.34 16 19 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 20 C 0.03 1.49 5.40 84.65 0.46 1.95 16 21 N -0.90 -54.10 12.84 21.45 0.28 -53.82 16 22 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 26 H 0.07 1.59 6.52 -2.39 -0.02 1.57 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 1.37 6.23 -2.39 -0.01 1.35 16 29 H 0.09 1.77 6.20 -2.38 -0.01 1.75 16 30 H 0.08 1.83 8.04 -2.39 -0.02 1.81 16 31 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 34 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.04 1.77 6.19 -2.39 -0.01 1.76 16 36 H 0.09 2.32 6.33 -2.39 -0.02 2.30 16 37 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.02 0.83 8.12 -2.39 -0.02 0.81 16 39 H 0.07 2.88 5.89 -2.39 -0.01 2.87 16 40 H 0.35 16.74 9.04 -74.06 -0.67 16.07 16 41 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -65.23 335.12 1.58 -63.65 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.36 Total: 25.62 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 4.05 Total: -23.62 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -3.76 Total: -76.37 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -1.88 Total: -32.03 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.65 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -65.23 1.58 -63.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930701894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.286 kcal (2) G-P(sol) polarization free energy of solvation -65.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds