Wall clock time and date at job start Tue Mar 31 2020 05:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46706 * 2 1 4 4 C 1.52997 * 109.47192 * 119.99994 * 2 1 3 5 5 C 1.50699 * 109.47337 * 185.00246 * 4 2 1 6 6 C 1.38263 * 119.98974 * 89.99449 * 5 4 2 7 7 C 1.38227 * 120.05156 * 179.97438 * 6 5 4 8 8 C 1.38219 * 120.02402 * 0.30685 * 7 6 5 9 9 C 1.38438 * 119.97316 * 359.46494 * 8 7 6 10 10 F 1.35104 * 120.02417 * 180.25968 * 9 8 7 11 11 C 1.38176 * 119.98501 * 270.02535 * 5 4 2 12 12 N 1.46902 * 109.46964 * 239.99978 * 2 1 3 13 13 C 1.46898 * 111.00083 * 306.04534 * 12 2 1 14 14 C 1.46896 * 110.99893 * 70.00070 * 12 2 1 15 15 C 1.53001 * 109.47217 * 170.00280 * 14 12 2 16 16 H 1.08996 * 109.47258 * 59.99546 * 15 14 12 17 17 O 1.42912 * 109.46536 * 299.99772 * 15 14 12 18 18 C 1.50694 * 109.47414 * 179.97438 * 15 14 12 19 19 H 1.07999 * 120.00037 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99924 * 179.97438 * 18 15 14 21 21 N 1.31507 * 120.00191 * 0.02562 * 20 18 15 22 22 Si 1.86805 * 119.99811 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.46702 * 60.00555 * 22 20 18 24 24 H 1.48501 * 109.47023 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47136 * 300.00385 * 22 20 18 26 26 H 1.09004 * 109.46966 * 300.00157 * 1 2 3 27 27 H 1.09003 * 109.47079 * 59.99661 * 1 2 3 28 28 H 1.08996 * 109.47216 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47330 * 64.99627 * 4 2 1 30 30 H 1.09005 * 109.46892 * 304.99696 * 4 2 1 31 31 H 1.07999 * 119.97831 * 0.02562 * 6 5 4 32 32 H 1.08002 * 119.98464 * 180.02562 * 7 6 5 33 33 H 1.08004 * 120.01020 * 179.72204 * 8 7 6 34 34 H 1.08000 * 120.01275 * 359.97066 * 11 5 4 35 35 H 1.08997 * 109.46928 * 59.99827 * 13 12 2 36 36 H 1.08996 * 109.47346 * 180.02562 * 13 12 2 37 37 H 1.09006 * 109.47030 * 300.00344 * 13 12 2 38 38 H 1.09000 * 109.47110 * 289.99876 * 14 12 2 39 39 H 1.08996 * 109.47376 * 49.99899 * 14 12 2 40 40 H 0.96696 * 113.99903 * 299.99577 * 17 15 14 41 41 H 0.96998 * 120.00466 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.6149 1.3127 6 6 4.1323 0.4497 1.9684 7 6 5.5098 0.5483 2.0279 8 6 6.2986 -0.4142 1.4264 9 6 5.7087 -1.4831 0.7737 10 9 6.4788 -2.4272 0.1900 11 6 4.3286 -1.5810 0.7152 12 7 2.0197 -0.6925 -1.1995 13 6 1.4344 -2.0355 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4884 -0.5257 -3.5973 16 1 2.1388 -1.5473 -3.7460 17 8 3.8933 -0.5362 -3.3355 18 6 2.2143 0.2841 -4.8383 19 1 1.5793 1.1561 -4.7848 20 6 2.7749 -0.0877 -6.0418 21 7 3.5484 -1.1492 -6.1069 22 14 2.4345 0.9157 -7.5803 23 1 2.9095 2.3081 -7.3782 24 1 3.1494 0.3119 -8.7334 25 1 0.9746 0.9252 -7.8522 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.7517 -1.7715 1.2056 30 1 1.6055 -0.2616 2.1370 31 1 3.5167 1.2044 2.4352 32 1 5.9697 1.3801 2.5407 33 1 7.3749 -0.3346 1.4692 34 1 3.8673 -2.4124 0.2030 35 1 0.3491 -1.9549 -1.3693 36 1 1.8140 -2.5261 -2.2040 37 1 1.7060 -2.6221 -0.4301 38 1 0.6814 0.1053 -2.6087 39 1 2.1025 1.1188 -2.2604 40 1 4.2734 0.3414 -3.1929 41 1 3.9425 -1.4110 -6.9537 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930701895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:01 Heat of formation + Delta-G solvation = -70.655191 kcal Electronic energy + Delta-G solvation = -22701.059331 eV Core-core repulsion = 19302.293888 eV Total energy + Delta-G solvation = -3398.765443 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.55145 -39.35432 -37.84340 -35.29759 -32.63006 -32.01571 -30.53705 -30.02861 -28.14552 -26.53545 -26.03803 -23.94514 -22.50197 -21.69178 -20.33732 -19.18294 -17.08079 -16.99709 -16.17689 -15.95799 -15.32774 -15.24416 -14.78032 -14.60141 -14.44094 -14.03896 -13.62810 -13.41005 -13.14985 -13.10731 -12.66415 -12.55523 -12.15387 -11.97939 -11.66174 -11.51772 -11.38037 -11.15720 -10.97098 -10.88871 -10.77856 -10.63078 -10.47265 -10.41979 -9.98518 -8.94146 -8.65522 -8.52248 -8.43044 -8.02515 -7.53318 -5.96198 -4.14587 1.38424 1.47612 3.30408 3.36012 3.37273 3.79196 4.33735 4.50377 4.51628 4.82454 4.96063 5.09946 5.21732 5.30934 5.33331 5.37097 5.52968 5.54205 5.60281 5.73345 5.80634 5.91215 5.98865 6.02776 6.08735 6.21504 6.26344 6.29022 6.39683 6.40845 6.47573 6.54547 6.63651 6.74923 6.88063 7.14223 7.59614 7.68567 7.82447 7.94056 8.25544 8.89213 9.51395 9.68407 11.07758 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017008 B = 0.005161 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.915891 B = 5424.500392 C = 6330.750431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.082 3.918 3 H 0.078 0.922 4 C -0.074 4.074 5 C -0.034 4.034 6 C -0.136 4.136 7 C -0.097 4.097 8 C -0.165 4.165 9 C 0.101 3.899 10 F -0.142 7.142 11 C -0.116 4.116 12 N -0.517 5.517 13 C 0.019 3.981 14 C 0.032 3.968 15 C 0.238 3.762 16 H 0.053 0.947 17 O -0.552 6.552 18 C -0.575 4.575 19 H 0.052 0.948 20 C 0.081 3.919 21 N -0.858 5.858 22 Si 0.887 3.113 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.021 0.979 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.026 0.974 39 H 0.059 0.941 40 H 0.341 0.659 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.392 1.755 17.483 17.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.027 4.027 3 H 0.096 0.904 4 C -0.112 4.112 5 C -0.034 4.034 6 C -0.154 4.154 7 C -0.115 4.115 8 C -0.184 4.184 9 C 0.082 3.918 10 F -0.120 7.120 11 C -0.134 4.134 12 N -0.240 5.240 13 C -0.129 4.129 14 C -0.095 4.095 15 C 0.180 3.820 16 H 0.071 0.929 17 O -0.353 6.353 18 C -0.613 4.613 19 H 0.070 0.930 20 C -0.125 4.125 21 N -0.494 5.494 22 Si 0.715 3.285 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.203 1.203 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.152 0.848 35 H 0.040 0.960 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.044 0.956 39 H 0.078 0.922 40 H 0.184 0.816 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.825 0.872 17.311 17.353 hybrid contribution -0.932 1.179 -1.224 1.938 sum -1.757 2.051 16.087 16.312 Atomic orbital electron populations 1.22479 0.97940 1.02175 1.01933 1.21713 0.91985 0.98241 0.90793 0.90356 1.20733 0.90934 1.01844 0.97641 1.19493 0.95438 0.93409 0.95069 1.21005 0.94719 0.98336 1.01335 1.20841 0.93553 0.98084 0.98998 1.21039 1.00631 0.95132 1.01560 1.17726 0.89057 0.88197 0.96798 1.91497 1.75174 1.63126 1.82239 1.20981 0.91230 1.01282 0.99941 1.62222 1.57434 1.02441 1.01950 1.22472 0.96569 0.91495 1.02394 1.23064 0.98479 0.96972 0.91007 1.19298 0.79061 0.96050 0.87594 0.92919 1.86571 1.24090 1.31019 1.93621 1.21628 1.32364 1.13320 0.94031 0.92951 1.25008 0.94252 0.94618 0.98671 1.70066 1.29840 1.23892 1.25552 0.86769 0.78371 0.80583 0.82806 1.20190 1.21203 1.20266 0.92700 0.92239 0.92210 0.90706 0.90859 0.86077 0.85708 0.85460 0.84815 0.96012 0.90535 0.92529 0.95566 0.92202 0.81647 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.27 8.44 37.16 0.31 -1.96 16 2 C 0.08 1.11 2.30 -67.71 -0.16 0.96 16 3 H 0.08 1.11 7.93 -51.93 -0.41 0.70 16 4 C -0.07 -0.86 4.74 -27.88 -0.13 -0.99 16 5 C -0.03 -0.44 4.95 -104.64 -0.52 -0.96 16 6 C -0.14 -1.59 9.70 -39.58 -0.38 -1.97 16 7 C -0.10 -1.11 10.04 -39.59 -0.40 -1.51 16 8 C -0.16 -2.16 10.03 -39.51 -0.40 -2.56 16 9 C 0.10 1.57 7.30 -39.42 -0.29 1.28 16 10 F -0.14 -2.41 17.27 2.25 0.04 -2.37 16 11 C -0.12 -1.75 9.29 -39.52 -0.37 -2.11 16 12 N -0.52 -8.84 3.96 -234.89 -0.93 -9.77 16 13 C 0.02 0.31 8.55 60.06 0.51 0.82 16 14 C 0.03 0.65 4.13 -3.83 -0.02 0.64 16 15 C 0.24 6.01 2.70 -27.89 -0.08 5.94 16 16 H 0.05 1.47 6.47 -51.93 -0.34 1.13 16 17 O -0.55 -14.59 12.60 -35.23 -0.44 -15.03 16 18 C -0.57 -15.85 8.76 -34.44 -0.30 -16.15 16 19 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 20 C 0.08 2.28 5.40 -17.82 -0.10 2.18 16 21 N -0.86 -25.69 12.84 55.43 0.71 -24.98 16 22 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.80 6.91 -51.93 -0.36 0.45 16 28 H 0.06 0.72 6.33 -51.93 -0.33 0.39 16 29 H 0.07 0.85 6.28 -51.93 -0.33 0.53 16 30 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 31 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.13 2.10 7.51 -52.49 -0.39 1.71 16 35 H 0.02 0.33 6.21 -51.93 -0.32 0.01 16 36 H 0.08 1.46 6.30 -51.93 -0.33 1.13 16 37 H 0.06 0.79 5.85 -51.93 -0.30 0.49 16 38 H 0.03 0.53 7.06 -51.93 -0.37 0.16 16 39 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 40 H 0.34 8.32 9.04 45.56 0.41 8.73 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 334.13 15.07 5.04 5.04 Total: -1.00 -30.82 334.13 -8.04 -38.85 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.13 Total: 8.32 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -2.30 Total: -16.38 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: -0.22 Total: -34.75 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.44 Total: -15.03 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.82 -8.04 -38.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930701895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.801 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds