Wall clock time and date at job start Tue Mar 31 2020 05:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46871 * 2 1 4 4 C 1.53004 * 109.46871 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47228 * 60.00522 * 3 2 1 6 6 C 1.46901 * 110.99957 * 59.99376 * 5 3 2 7 7 C 1.53000 * 109.47114 * 180.02562 * 6 5 3 8 8 H 1.09003 * 109.47076 * 60.00052 * 7 6 5 9 9 O 1.42903 * 109.47140 * 300.00087 * 7 6 5 10 10 C 1.50701 * 109.47071 * 180.02562 * 7 6 5 11 11 H 1.07991 * 120.00227 * 359.97438 * 10 7 6 12 12 C 1.37882 * 119.99539 * 179.97438 * 10 7 6 13 13 N 1.31509 * 120.00418 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99723 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.46928 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47071 * 119.99773 * 14 12 10 17 17 H 1.48498 * 109.47069 * 240.00240 * 14 12 10 18 18 C 1.50696 * 109.47403 * 299.99955 * 3 2 1 19 19 C 1.38249 * 119.97160 * 149.99715 * 18 3 2 20 20 C 1.38196 * 120.02483 * 179.97438 * 19 18 3 21 21 C 1.38458 * 119.97492 * 0.02940 * 20 19 18 22 22 F 1.35104 * 120.02786 * 179.97438 * 21 20 19 23 23 C 1.38465 * 119.94675 * 0.24873 * 21 20 19 24 24 C 1.38197 * 119.97511 * 359.47283 * 23 21 20 25 25 H 1.09004 * 109.47396 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47080 * 299.99216 * 1 2 3 27 27 H 1.08992 * 109.47634 * 59.99581 * 1 2 3 28 28 H 1.08998 * 109.46642 * 240.00628 * 2 1 3 29 29 H 1.09002 * 109.47105 * 120.00406 * 2 1 3 30 30 H 1.08999 * 109.46955 * 180.02562 * 4 3 2 31 31 H 1.08992 * 109.47108 * 300.00414 * 4 3 2 32 32 H 1.08998 * 109.46642 * 60.00628 * 4 3 2 33 33 H 1.00897 * 111.00481 * 183.95130 * 5 3 2 34 34 H 1.09003 * 109.47134 * 300.00216 * 6 5 3 35 35 H 1.09003 * 109.47106 * 60.00287 * 6 5 3 36 36 H 0.96700 * 114.00177 * 300.00248 * 9 7 6 37 37 H 0.97000 * 120.00363 * 179.97438 * 13 12 10 38 38 H 1.08001 * 119.98900 * 359.97438 * 19 18 3 39 39 H 1.07996 * 120.01603 * 180.02562 * 20 19 18 40 40 H 1.08007 * 120.01049 * 179.72700 * 23 21 20 41 41 H 1.07994 * 119.98812 * 180.27364 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 1.5504 2.1350 1.1995 6 6 2.0214 1.4687 2.4211 7 6 1.4919 2.2165 3.6464 8 1 0.4020 2.2160 3.6294 9 8 1.9680 3.5638 3.6247 10 6 1.9757 1.5334 4.8996 11 1 2.5981 0.6537 4.8292 12 6 1.6235 2.0317 6.1360 13 7 0.8652 3.1027 6.2218 14 14 2.2225 1.1846 7.6895 15 1 3.0538 0.0098 7.3234 16 1 3.0353 2.1354 8.4898 17 1 1.0552 0.7355 8.4899 18 6 1.5377 2.1529 -1.2304 19 6 1.3074 3.5156 -1.1955 20 6 0.8472 4.1683 -2.3233 21 6 0.6163 3.4569 -3.4885 22 9 0.1659 4.0938 -4.5916 23 6 0.8418 2.0911 -3.5206 24 6 1.3074 1.4415 -2.3932 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8898 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.9333 2.4702 -0.0002 31 1 3.9337 0.9285 0.8890 32 1 3.9329 0.9289 -0.8909 33 1 1.8198 3.1073 1.1911 34 1 1.6579 0.4412 2.4378 35 1 3.1113 1.4689 2.4379 36 1 2.9318 3.6406 3.6380 37 1 0.6171 3.4530 7.0917 38 1 1.4871 4.0704 -0.2864 39 1 0.6678 5.2329 -2.2960 40 1 0.6578 1.5343 -4.4276 41 1 1.4876 0.3770 -2.4193 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931380657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:11 Heat of formation + Delta-G solvation = -75.767370 kcal Electronic energy + Delta-G solvation = -22453.694303 eV Core-core repulsion = 19054.707180 eV Total energy + Delta-G solvation = -3398.987123 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.90351 -40.04113 -37.33148 -35.48628 -32.28434 -32.04448 -30.97862 -30.38991 -28.85037 -27.54309 -24.59528 -23.69016 -22.71877 -22.43624 -20.59612 -19.04771 -17.86644 -16.92788 -16.43221 -16.15421 -15.60933 -14.91882 -14.59826 -14.54950 -14.25626 -14.09536 -13.95022 -13.73188 -13.06373 -13.00889 -12.91686 -12.72076 -12.41797 -12.23774 -11.96485 -11.61809 -11.14393 -11.12053 -11.03960 -10.97802 -10.81725 -10.67786 -10.45698 -10.27741 -10.07184 -9.09666 -9.01956 -8.60016 -8.54295 -8.19961 -7.76572 -6.01823 -4.20082 1.14647 1.23112 3.25454 3.34008 3.36672 3.57830 4.23775 4.34006 4.53390 4.70778 4.76960 4.84876 5.03577 5.17568 5.25521 5.30187 5.40651 5.53683 5.70618 5.72192 5.79413 5.88078 5.99112 6.00636 6.07597 6.12123 6.18294 6.22446 6.23581 6.37140 6.41832 6.48756 6.57785 6.71395 6.88005 6.92683 7.52194 7.75155 7.83002 7.97507 8.21514 8.83705 9.36257 9.57143 11.02399 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030033 B = 0.003851 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.076033 B = 7269.191050 C = 7687.556792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C 0.148 3.852 4 C -0.177 4.177 5 N -0.670 5.670 6 C 0.032 3.968 7 C 0.232 3.768 8 H 0.063 0.937 9 O -0.565 6.565 10 C -0.572 4.572 11 H 0.055 0.945 12 C 0.080 3.920 13 N -0.857 5.857 14 Si 0.887 3.113 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.061 4.061 19 C -0.077 4.077 20 C -0.151 4.151 21 C 0.084 3.916 22 F -0.146 7.146 23 C -0.156 4.156 24 C -0.089 4.089 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.342 0.658 34 H 0.069 0.931 35 H 0.022 0.978 36 H 0.340 0.660 37 H 0.260 0.740 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.534 -2.857 -17.321 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C 0.057 3.943 4 C -0.236 4.236 5 N -0.302 5.302 6 C -0.097 4.097 7 C 0.174 3.826 8 H 0.080 0.920 9 O -0.367 6.367 10 C -0.611 4.611 11 H 0.073 0.927 12 C -0.126 4.126 13 N -0.493 5.493 14 Si 0.715 3.285 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.062 4.062 19 C -0.095 4.095 20 C -0.170 4.170 21 C 0.065 3.935 22 F -0.125 7.125 23 C -0.175 4.175 24 C -0.107 4.107 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.163 0.837 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.183 0.817 37 H 0.069 0.931 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.146 -2.895 -17.243 17.522 hybrid contribution 1.736 -0.248 0.757 1.910 sum 2.881 -3.142 -16.486 17.028 Atomic orbital electron populations 1.21721 0.94893 1.00456 1.03266 1.21615 0.97286 0.94235 1.01564 1.19812 0.91717 0.94075 0.88728 1.22543 0.96531 1.02192 1.02363 1.60751 1.62841 1.06253 1.00399 1.22943 0.96739 0.99436 0.90540 1.19425 0.95650 0.79068 0.88418 0.91954 1.86592 1.23224 1.30095 1.96834 1.21659 1.34244 1.13625 0.91551 0.92712 1.25024 0.94151 0.94401 0.99035 1.70087 1.34145 1.20972 1.24117 0.86643 0.78713 0.79656 0.83507 1.19760 1.20937 1.20864 1.19861 0.98149 0.93577 0.94621 1.20934 0.96841 0.94162 0.97576 1.21134 1.02858 1.00842 0.92148 1.17721 1.01227 0.91024 0.83507 1.91474 1.86968 1.82266 1.51774 1.21058 1.03555 0.92723 1.00125 1.20929 0.98076 1.00215 0.91518 0.93884 0.90757 0.93048 0.92320 0.91196 0.92587 0.91425 0.92556 0.83735 0.91273 0.96012 0.81689 0.93060 0.84604 0.84929 0.85147 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.43 37.16 0.35 -1.60 16 2 C -0.11 -1.38 4.11 -26.73 -0.11 -1.49 16 3 C 0.15 1.96 0.53 -132.75 -0.07 1.89 16 4 C -0.18 -2.20 8.21 37.16 0.31 -1.89 16 5 N -0.67 -10.86 5.08 -101.14 -0.51 -11.37 16 6 C 0.03 0.61 4.54 -3.82 -0.02 0.59 16 7 C 0.23 5.63 3.10 -27.88 -0.09 5.54 16 8 H 0.06 1.72 8.14 -51.93 -0.42 1.30 16 9 O -0.57 -13.77 12.07 -35.23 -0.43 -14.19 16 10 C -0.57 -15.28 8.76 -34.44 -0.30 -15.58 16 11 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 12 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 13 N -0.86 -25.07 12.84 55.43 0.71 -24.36 16 14 Si 0.89 20.86 29.54 -169.99 -5.02 15.83 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C -0.06 -0.77 4.08 -104.62 -0.43 -1.19 16 19 C -0.08 -0.97 9.28 -39.59 -0.37 -1.34 16 20 C -0.15 -1.81 10.03 -39.52 -0.40 -2.21 16 21 C 0.08 1.02 7.30 -39.42 -0.29 0.74 16 22 F -0.15 -1.84 17.27 2.25 0.04 -1.80 16 23 C -0.16 -1.70 10.03 -39.51 -0.40 -2.10 16 24 C -0.09 -0.99 7.77 -39.59 -0.31 -1.29 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 1.19 7.60 -51.93 -0.39 0.79 16 27 H 0.05 0.66 6.17 -51.93 -0.32 0.34 16 28 H 0.06 0.62 6.51 -51.93 -0.34 0.28 16 29 H 0.07 0.96 6.40 -51.93 -0.33 0.63 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.90 6.41 -51.93 -0.33 0.56 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.34 5.61 6.14 -39.29 -0.24 5.37 16 34 H 0.07 1.33 6.30 -51.93 -0.33 1.00 16 35 H 0.02 0.40 6.31 -51.93 -0.33 0.08 16 36 H 0.34 7.34 9.04 45.56 0.41 7.76 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.14 1.72 6.27 -52.49 -0.33 1.39 16 39 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 41 H 0.13 1.25 6.16 -52.49 -0.32 0.92 16 LS Contribution 328.72 15.07 4.95 4.95 Total: -1.00 -29.17 328.72 -7.40 -36.56 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -4.93 Total: 12.19 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -2.21 Total: -17.83 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.20 Total: -35.72 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.43 Total: -14.19 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.17 -7.40 -36.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931380657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.203 kcal (2) G-P(sol) polarization free energy of solvation -29.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds