Wall clock time and date at job start Tue Mar 31 2020 05:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46871 * 2 1 4 4 C 1.53004 * 109.46871 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47228 * 60.00522 * 3 2 1 6 6 C 1.46901 * 110.99957 * 59.99376 * 5 3 2 7 7 C 1.53000 * 109.47114 * 180.02562 * 6 5 3 8 8 H 1.09003 * 109.47076 * 60.00052 * 7 6 5 9 9 O 1.42903 * 109.47140 * 300.00087 * 7 6 5 10 10 C 1.50701 * 109.47071 * 180.02562 * 7 6 5 11 11 H 1.07991 * 120.00227 * 359.97438 * 10 7 6 12 12 C 1.37882 * 119.99539 * 179.97438 * 10 7 6 13 13 N 1.31509 * 120.00418 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99723 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.46928 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47071 * 119.99773 * 14 12 10 17 17 H 1.48498 * 109.47069 * 240.00240 * 14 12 10 18 18 C 1.50696 * 109.47403 * 299.99955 * 3 2 1 19 19 C 1.38249 * 119.97160 * 149.99715 * 18 3 2 20 20 C 1.38196 * 120.02483 * 179.97438 * 19 18 3 21 21 C 1.38458 * 119.97492 * 0.02940 * 20 19 18 22 22 F 1.35104 * 120.02786 * 179.97438 * 21 20 19 23 23 C 1.38465 * 119.94675 * 0.24873 * 21 20 19 24 24 C 1.38197 * 119.97511 * 359.47283 * 23 21 20 25 25 H 1.09004 * 109.47396 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47080 * 299.99216 * 1 2 3 27 27 H 1.08992 * 109.47634 * 59.99581 * 1 2 3 28 28 H 1.08998 * 109.46642 * 240.00628 * 2 1 3 29 29 H 1.09002 * 109.47105 * 120.00406 * 2 1 3 30 30 H 1.08999 * 109.46955 * 180.02562 * 4 3 2 31 31 H 1.08992 * 109.47108 * 300.00414 * 4 3 2 32 32 H 1.08998 * 109.46642 * 60.00628 * 4 3 2 33 33 H 1.00897 * 111.00481 * 183.95130 * 5 3 2 34 34 H 1.09003 * 109.47134 * 300.00216 * 6 5 3 35 35 H 1.09003 * 109.47106 * 60.00287 * 6 5 3 36 36 H 0.96700 * 114.00177 * 300.00248 * 9 7 6 37 37 H 0.97000 * 120.00363 * 179.97438 * 13 12 10 38 38 H 1.08001 * 119.98900 * 359.97438 * 19 18 3 39 39 H 1.07996 * 120.01603 * 180.02562 * 20 19 18 40 40 H 1.08007 * 120.01049 * 179.72700 * 23 21 20 41 41 H 1.07994 * 119.98812 * 180.27364 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 1.5504 2.1350 1.1995 6 6 2.0214 1.4687 2.4211 7 6 1.4919 2.2165 3.6464 8 1 0.4020 2.2160 3.6294 9 8 1.9680 3.5638 3.6247 10 6 1.9757 1.5334 4.8996 11 1 2.5981 0.6537 4.8292 12 6 1.6235 2.0317 6.1360 13 7 0.8652 3.1027 6.2218 14 14 2.2225 1.1846 7.6895 15 1 3.0538 0.0098 7.3234 16 1 3.0353 2.1354 8.4898 17 1 1.0552 0.7355 8.4899 18 6 1.5377 2.1529 -1.2304 19 6 1.3074 3.5156 -1.1955 20 6 0.8472 4.1683 -2.3233 21 6 0.6163 3.4569 -3.4885 22 9 0.1659 4.0938 -4.5916 23 6 0.8418 2.0911 -3.5206 24 6 1.3074 1.4415 -2.3932 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8898 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.9333 2.4702 -0.0002 31 1 3.9337 0.9285 0.8890 32 1 3.9329 0.9289 -0.8909 33 1 1.8198 3.1073 1.1911 34 1 1.6579 0.4412 2.4378 35 1 3.1113 1.4689 2.4379 36 1 2.9318 3.6406 3.6380 37 1 0.6171 3.4530 7.0917 38 1 1.4871 4.0704 -0.2864 39 1 0.6678 5.2329 -2.2960 40 1 0.6578 1.5343 -4.4276 41 1 1.4876 0.3770 -2.4193 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931380657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:11 Heat of formation + Delta-G solvation = -94.482205 kcal Electronic energy + Delta-G solvation = -22454.505839 eV Core-core repulsion = 19054.707180 eV Total energy + Delta-G solvation = -3399.798660 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.84891 -41.06116 -38.61607 -37.14295 -34.24852 -33.40403 -32.08175 -31.38420 -30.00590 -29.17575 -26.27032 -24.74256 -23.87530 -23.40964 -22.25394 -20.18514 -18.94482 -18.78596 -17.57723 -17.19940 -16.63892 -16.55464 -16.22420 -15.99939 -15.58196 -15.25170 -15.17371 -14.79303 -14.43226 -14.25848 -13.97773 -13.94394 -13.72972 -13.48384 -13.01608 -12.98949 -12.89493 -12.79986 -12.57771 -12.21840 -12.10229 -12.01797 -11.90120 -11.48831 -11.36086 -10.95206 -10.69253 -10.12331 -9.98858 -9.52995 -9.06698 -8.11665 -6.36976 0.21144 0.33841 1.40218 1.42030 1.53483 2.39700 2.65310 3.14616 3.30523 3.36849 3.69066 3.79729 4.00247 4.04406 4.17312 4.33182 4.39366 4.47836 4.53541 4.55060 4.63290 4.73251 4.79320 4.82952 4.97511 5.01262 5.05993 5.17740 5.20469 5.25071 5.27981 5.29555 5.45797 5.60793 5.62350 5.66257 5.80505 5.97161 6.07748 6.33177 6.61204 6.78473 7.36191 7.58574 8.92978 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030033 B = 0.003851 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.076033 B = 7269.191050 C = 7687.556792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C 0.150 3.850 4 C -0.173 4.173 5 N -0.676 5.676 6 C 0.057 3.943 7 C 0.233 3.767 8 H 0.018 0.982 9 O -0.578 6.578 10 C -0.584 4.584 11 H 0.059 0.941 12 C 0.026 3.974 13 N -0.900 5.900 14 Si 0.957 3.043 15 H -0.262 1.262 16 H -0.280 1.280 17 H -0.281 1.281 18 C -0.069 4.069 19 C -0.091 4.091 20 C -0.156 4.156 21 C 0.071 3.929 22 F -0.150 7.150 23 C -0.150 4.150 24 C -0.085 4.085 25 H 0.056 0.944 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.340 0.660 34 H 0.067 0.933 35 H 0.029 0.971 36 H 0.352 0.648 37 H 0.260 0.740 38 H 0.128 0.872 39 H 0.141 0.859 40 H 0.155 0.845 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.625 -4.463 -18.643 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.147 4.147 3 C 0.059 3.941 4 C -0.232 4.232 5 N -0.309 5.309 6 C -0.072 4.072 7 C 0.176 3.824 8 H 0.036 0.964 9 O -0.381 6.381 10 C -0.622 4.622 11 H 0.078 0.922 12 C -0.176 4.176 13 N -0.537 5.537 14 Si 0.782 3.218 15 H -0.186 1.186 16 H -0.206 1.206 17 H -0.207 1.207 18 C -0.070 4.070 19 C -0.109 4.109 20 C -0.175 4.175 21 C 0.052 3.948 22 F -0.129 7.129 23 C -0.168 4.168 24 C -0.103 4.103 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.160 0.840 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.197 0.803 37 H 0.069 0.931 38 H 0.146 0.854 39 H 0.159 0.841 40 H 0.173 0.827 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.251 -4.512 -18.582 19.254 hybrid contribution 1.363 0.286 1.091 1.769 sum 3.614 -4.226 -17.491 18.354 Atomic orbital electron populations 1.21654 0.95516 1.00911 1.01772 1.21655 0.96655 0.93815 1.02537 1.19875 0.92475 0.94225 0.87564 1.22485 0.95549 1.02228 1.02919 1.60658 1.63372 1.06203 1.00636 1.22451 0.96688 0.98401 0.89687 1.19223 0.93350 0.79438 0.90424 0.96370 1.86525 1.24363 1.30262 1.96995 1.22075 1.33771 1.13670 0.92696 0.92230 1.25879 0.94254 0.94986 1.02509 1.70227 1.35828 1.22803 1.24864 0.85545 0.78181 0.78763 0.79275 1.18615 1.20599 1.20711 1.19844 0.98792 0.93496 0.94823 1.20936 0.97793 0.94581 0.97607 1.21249 1.02706 1.01486 0.92076 1.17922 1.01708 0.91759 0.83369 1.91463 1.87089 1.82467 1.51907 1.21334 1.02266 0.92237 1.00992 1.21132 0.97274 1.01176 0.90733 0.92477 0.94177 0.92542 0.89185 0.92312 0.92869 0.92372 0.90394 0.84000 0.91512 0.95263 0.80314 0.93122 0.85422 0.84073 0.82700 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.43 71.98 0.68 -2.89 16 2 C -0.11 -2.52 4.11 30.59 0.13 -2.40 16 3 C 0.15 3.74 0.53 2.78 0.00 3.74 16 4 C -0.17 -3.93 8.21 71.98 0.59 -3.34 16 5 N -0.68 -22.01 5.08 -473.88 -2.41 -24.42 16 6 C 0.06 2.17 4.54 86.30 0.39 2.56 16 7 C 0.23 11.63 3.10 29.85 0.09 11.73 16 8 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 9 O -0.58 -28.85 12.07 -148.98 -1.80 -30.65 16 10 C -0.58 -31.45 8.76 25.60 0.22 -31.23 16 11 H 0.06 3.09 7.74 -2.92 -0.02 3.06 16 12 C 0.03 1.44 5.40 84.66 0.46 1.90 16 13 N -0.90 -53.76 12.84 21.45 0.28 -53.48 16 14 Si 0.96 42.94 29.54 68.60 2.03 44.96 16 15 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 C -0.07 -1.60 4.08 -19.86 -0.08 -1.68 16 19 C -0.09 -2.24 9.28 22.26 0.21 -2.04 16 20 C -0.16 -3.63 10.03 22.31 0.22 -3.40 16 21 C 0.07 1.62 7.30 22.38 0.16 1.78 16 22 F -0.15 -3.57 17.27 44.97 0.78 -2.79 16 23 C -0.15 -2.85 10.03 22.31 0.22 -2.62 16 24 C -0.09 -1.62 7.77 22.26 0.17 -1.45 16 25 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.04 1.28 7.60 -2.39 -0.02 1.26 16 27 H 0.06 1.35 6.17 -2.39 -0.01 1.33 16 28 H 0.09 1.54 6.51 -2.39 -0.02 1.52 16 29 H 0.06 1.51 6.40 -2.39 -0.02 1.49 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.43 6.41 -2.39 -0.02 1.42 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.34 11.34 6.14 -89.70 -0.55 10.79 16 34 H 0.07 2.57 6.30 -2.39 -0.02 2.56 16 35 H 0.03 1.07 6.31 -2.39 -0.02 1.06 16 36 H 0.35 15.42 9.04 -74.06 -0.67 14.75 16 37 H 0.26 14.70 8.31 -92.71 -0.77 13.92 16 38 H 0.13 3.30 6.27 -2.91 -0.02 3.28 16 39 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 40 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 41 H 0.16 2.23 6.16 -2.91 -0.02 2.21 16 Total: -1.00 -63.21 328.72 2.18 -61.03 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: -0.16 Total: 34.70 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 3.47 Total: -29.35 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -2.13 Total: -77.90 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -1.80 Total: -30.65 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.78 Total: -2.79 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -63.21 2.18 -61.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931380657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.457 kcal (2) G-P(sol) polarization free energy of solvation -63.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds