Wall clock time and date at job start Tue Mar 31 2020 05:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52997 * 109.47504 * 185.00270 * 3 2 1 5 5 N 1.46905 * 109.47150 * 305.00569 * 3 2 1 6 6 C 1.46901 * 110.99640 * 299.99691 * 5 3 2 7 7 C 1.52998 * 109.47195 * 180.02562 * 6 5 3 8 8 H 1.08997 * 109.46967 * 59.99724 * 7 6 5 9 9 O 1.42903 * 109.47023 * 299.99935 * 7 6 5 10 10 C 1.50699 * 109.47460 * 180.02562 * 7 6 5 11 11 H 1.08005 * 119.99503 * 359.97438 * 10 7 6 12 12 C 1.37878 * 120.00132 * 180.02562 * 10 7 6 13 13 N 1.31510 * 119.99813 * 359.97438 * 12 10 7 14 14 Si 1.86804 * 119.99570 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.46914 * 89.99787 * 14 12 10 16 16 H 1.48498 * 109.46738 * 209.99450 * 14 12 10 17 17 H 1.48489 * 109.47326 * 329.99560 * 14 12 10 18 18 C 1.50705 * 109.47390 * 64.99953 * 3 2 1 19 19 C 1.38253 * 119.96768 * 29.72698 * 18 3 2 20 20 C 1.38193 * 120.01997 * 179.72517 * 19 18 3 21 21 C 1.38463 * 119.97672 * 0.52690 * 20 19 18 22 22 F 1.35098 * 120.02441 * 179.72345 * 21 20 19 23 23 C 1.38454 * 119.94767 * 359.74840 * 21 20 19 24 24 C 1.38198 * 119.97676 * 0.02562 * 23 21 20 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 1.09002 * 109.47016 * 59.99741 * 4 3 2 31 31 H 1.09000 * 109.47400 * 180.02562 * 4 3 2 32 32 H 1.09004 * 109.46881 * 300.00361 * 4 3 2 33 33 H 1.00894 * 111.00356 * 63.94898 * 5 3 2 34 34 H 1.08999 * 109.46945 * 300.00272 * 6 5 3 35 35 H 1.08997 * 109.47389 * 60.00129 * 6 5 3 36 36 H 0.96698 * 114.00279 * 300.00000 * 9 7 6 37 37 H 0.97003 * 119.99307 * 180.02562 * 13 12 10 38 38 H 1.07997 * 119.99112 * 359.97438 * 19 18 3 39 39 H 1.08004 * 120.01228 * 180.29570 * 20 19 18 40 40 H 1.08004 * 120.01467 * 179.97438 * 23 21 20 41 41 H 1.07998 * 119.99230 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 -0.1258 5 7 1.4541 2.1690 -1.1345 6 6 1.8223 1.5392 -2.4095 7 6 1.1958 2.3224 -3.5649 8 1 1.5609 3.3493 -3.5480 9 8 -0.2265 2.3203 -3.4258 10 6 1.5730 1.6761 -4.8729 11 1 2.1976 0.7950 -4.8795 12 6 1.1216 2.2101 -6.0613 13 7 0.3615 3.2832 -6.0532 14 14 1.5899 1.4092 -7.6826 15 1 0.5731 0.3883 -8.0422 16 1 1.6504 2.4436 -8.7463 17 1 2.9181 0.7590 -7.5482 18 6 1.6413 2.1163 1.2877 19 6 1.5011 1.3700 2.4430 20 6 1.1411 1.9877 3.6257 21 6 0.9102 3.3527 3.6509 22 9 0.5528 3.9566 4.8053 23 6 1.0454 4.0981 2.4920 24 6 1.4100 3.4791 1.3114 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.8531 0.9571 -1.0572 31 1 3.9281 2.4721 -0.1253 32 1 3.9994 0.9053 0.7160 33 1 0.4518 2.2376 -1.0413 34 1 2.9071 1.5412 -2.5158 35 1 1.4576 0.5123 -2.4263 36 1 -0.6210 1.4375 -3.4324 37 1 0.0436 3.6586 -6.8892 38 1 1.6768 0.3047 2.4222 39 1 1.0362 1.4053 4.5292 40 1 0.8651 5.1628 2.5103 41 1 1.5160 4.0603 0.4074 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931380666.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:13 Heat of formation + Delta-G solvation = -95.553591 kcal Electronic energy + Delta-G solvation = -22491.330667 eV Core-core repulsion = 19091.485549 eV Total energy + Delta-G solvation = -3399.845118 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.85225 -41.05690 -38.67328 -37.14986 -34.23490 -33.16689 -32.08001 -31.44749 -29.93818 -29.37126 -26.31526 -24.72141 -23.86143 -23.37592 -22.23078 -20.11817 -18.86782 -18.69504 -17.62443 -17.07742 -16.63255 -16.56640 -16.48564 -16.02621 -15.56760 -15.35924 -15.26023 -14.78596 -14.39767 -14.30347 -13.94804 -13.84505 -13.76638 -13.11541 -13.07054 -12.91926 -12.88457 -12.78112 -12.66193 -12.42005 -12.06093 -11.97229 -11.87687 -11.54511 -11.48358 -10.96322 -10.69021 -10.12684 -9.98091 -9.46773 -9.12022 -8.11268 -6.36610 0.20932 0.35739 1.41203 1.42253 1.52655 2.40006 2.67460 3.14911 3.30862 3.34717 3.69501 3.87715 4.01733 4.04451 4.16596 4.32171 4.34831 4.44012 4.52061 4.63076 4.64880 4.70275 4.77951 4.87017 4.97973 5.00451 5.07473 5.13089 5.22198 5.23803 5.27320 5.35872 5.41795 5.43071 5.64585 5.66049 5.81415 5.99209 6.07969 6.34502 6.62674 6.78707 7.36332 7.58323 8.93165 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030509 B = 0.003837 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.528995 B = 7296.466545 C = 7623.424811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.148 4.148 3 C 0.151 3.849 4 C -0.134 4.134 5 N -0.678 5.678 6 C 0.057 3.943 7 C 0.233 3.767 8 H 0.019 0.981 9 O -0.577 6.577 10 C -0.585 4.585 11 H 0.059 0.941 12 C 0.026 3.974 13 N -0.900 5.900 14 Si 0.957 3.043 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.264 1.264 18 C -0.077 4.077 19 C -0.085 4.085 20 C -0.152 4.152 21 C 0.074 3.926 22 F -0.151 7.151 23 C -0.161 4.161 24 C -0.080 4.080 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.342 0.658 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.351 0.649 37 H 0.260 0.740 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.139 0.861 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.926 -6.521 18.210 19.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.187 4.187 3 C 0.060 3.940 4 C -0.192 4.192 5 N -0.310 5.310 6 C -0.072 4.072 7 C 0.176 3.824 8 H 0.037 0.963 9 O -0.381 6.381 10 C -0.623 4.623 11 H 0.078 0.922 12 C -0.176 4.176 13 N -0.537 5.537 14 Si 0.782 3.218 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.189 1.189 18 C -0.078 4.078 19 C -0.103 4.103 20 C -0.171 4.171 21 C 0.055 3.945 22 F -0.129 7.129 23 C -0.180 4.180 24 C -0.098 4.098 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.162 0.838 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.196 0.804 37 H 0.069 0.931 38 H 0.173 0.827 39 H 0.173 0.827 40 H 0.157 0.843 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.433 -5.229 18.144 19.192 hybrid contribution -0.596 -1.055 -1.053 1.605 sum 2.837 -6.283 17.091 18.429 Atomic orbital electron populations 1.21798 0.95617 1.02172 1.01530 1.22246 0.96536 0.96808 1.03114 1.19854 0.95312 0.91126 0.87729 1.21865 0.92933 1.02190 1.02178 1.60617 1.16761 1.52852 1.00816 1.22438 1.00048 0.95631 0.89121 1.19226 0.78213 0.94504 0.90504 0.96287 1.86531 1.23471 1.31982 1.96070 1.22050 1.33581 1.13723 0.92961 0.92250 1.25874 0.94079 0.94844 1.02797 1.70225 1.33934 1.22062 1.27467 0.85599 0.79003 0.78185 0.79014 1.19867 1.21142 1.18862 1.19875 0.99496 0.93634 0.94807 1.21172 0.97498 1.01125 0.90462 1.21319 1.02802 0.92416 1.00534 1.17941 1.02616 0.92179 0.81752 1.91461 1.89714 1.84013 1.47755 1.21298 1.03509 1.01337 0.91859 1.21032 0.96492 0.94942 0.97346 0.92178 0.94182 0.91553 0.89124 0.92106 0.92619 0.92895 0.90415 0.83788 0.91586 0.95184 0.80444 0.93125 0.82683 0.82734 0.84264 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.19 71.98 0.66 -2.78 16 2 C -0.15 -3.21 4.02 30.59 0.12 -3.09 16 3 C 0.15 3.78 0.56 2.78 0.00 3.78 16 4 C -0.13 -3.24 8.22 71.98 0.59 -2.65 16 5 N -0.68 -22.11 4.79 -473.89 -2.27 -24.38 16 6 C 0.06 2.17 4.41 86.30 0.38 2.55 16 7 C 0.23 11.63 3.10 29.85 0.09 11.72 16 8 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 9 O -0.58 -28.94 12.07 -148.98 -1.80 -30.74 16 10 C -0.58 -31.52 8.76 25.60 0.22 -31.29 16 11 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 12 C 0.03 1.46 5.40 84.66 0.46 1.92 16 13 N -0.90 -53.74 12.84 21.45 0.28 -53.46 16 14 Si 0.96 42.92 29.54 68.60 2.03 44.95 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 17 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 18 C -0.08 -1.80 4.05 -19.86 -0.08 -1.88 16 19 C -0.08 -1.58 8.17 22.26 0.18 -1.40 16 20 C -0.15 -2.86 10.03 22.31 0.22 -2.64 16 21 C 0.07 1.68 7.30 22.37 0.16 1.85 16 22 F -0.15 -3.58 17.27 44.97 0.78 -2.81 16 23 C -0.16 -3.82 10.03 22.31 0.22 -3.60 16 24 C -0.08 -2.05 9.30 22.26 0.21 -1.84 16 25 H 0.06 1.28 6.63 -2.39 -0.02 1.27 16 26 H 0.04 1.07 6.51 -2.39 -0.02 1.06 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.09 1.49 6.21 -2.39 -0.01 1.47 16 29 H 0.06 1.47 6.68 -2.39 -0.02 1.46 16 30 H 0.05 1.44 6.40 -2.39 -0.02 1.42 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.34 11.73 6.31 -89.70 -0.57 11.16 16 34 H 0.07 2.54 6.30 -2.39 -0.02 2.53 16 35 H 0.03 1.10 6.34 -2.39 -0.02 1.09 16 36 H 0.35 15.56 9.04 -74.06 -0.67 14.89 16 37 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 38 H 0.16 2.14 6.04 -2.91 -0.02 2.13 16 39 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 41 H 0.13 3.76 7.40 -2.91 -0.02 3.74 16 Total: -1.00 -62.45 328.97 2.28 -60.17 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: -0.18 Total: 35.63 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 3.45 Total: -29.36 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -2.00 Total: -77.84 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -1.80 Total: -30.74 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.78 Total: -2.81 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -62.45 2.28 -60.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931380666.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.388 kcal (2) G-P(sol) polarization free energy of solvation -62.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds