Wall clock time and date at job start Tue Mar 31 2020 05:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 H 1.08999 * 109.47501 * 177.77838 * 3 2 1 5 5 N 1.46900 * 109.47318 * 57.77159 * 3 2 1 6 6 C 1.46903 * 110.99351 * 81.60577 * 5 3 2 7 7 C 1.53007 * 109.46578 * 178.56301 * 6 5 3 8 8 C 1.50702 * 109.46819 * 179.97438 * 7 6 5 9 9 H 1.07998 * 119.99841 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99876 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99666 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99953 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47265 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47008 * 119.99931 * 12 10 8 15 15 H 1.48500 * 109.46987 * 240.00002 * 12 10 8 16 16 C 1.50707 * 109.46630 * 297.77509 * 3 2 1 17 17 C 1.38172 * 120.01360 * 99.99988 * 16 3 2 18 18 C 1.38437 * 120.02751 * 179.97438 * 17 16 3 19 19 F 1.35098 * 119.96366 * 180.02562 * 18 17 16 20 20 C 1.38468 * 120.06273 * 0.02562 * 18 17 16 21 21 C 1.38132 * 120.03169 * 359.97438 * 20 18 17 22 22 C 1.38685 * 120.01537 * 279.72625 * 16 3 2 23 23 O 1.35947 * 120.03168 * 359.97438 * 22 16 3 24 24 C 1.42902 * 116.99993 * 179.97438 * 23 22 16 25 25 H 1.08999 * 109.46857 * 65.51924 * 1 2 3 26 26 H 1.08998 * 109.47067 * 305.51727 * 1 2 3 27 27 H 1.09000 * 109.47026 * 185.52108 * 1 2 3 28 28 H 1.09005 * 109.46871 * 119.99319 * 2 1 3 29 29 H 1.08994 * 109.47731 * 239.99399 * 2 1 3 30 30 H 1.00900 * 111.00036 * 205.55527 * 5 3 2 31 31 H 1.08994 * 109.46864 * 298.55631 * 6 5 3 32 32 H 1.08994 * 109.47486 * 58.56318 * 6 5 3 33 33 H 1.09004 * 109.46869 * 299.99833 * 7 6 5 34 34 H 1.08994 * 109.47198 * 59.99841 * 7 6 5 35 35 H 0.96999 * 119.99453 * 180.02562 * 11 10 8 36 36 H 1.08001 * 119.98536 * 0.02562 * 17 16 3 37 37 H 1.07998 * 119.98909 * 179.97438 * 20 18 17 38 38 H 1.07997 * 120.02032 * 180.02562 * 21 20 18 39 39 H 1.08998 * 109.46521 * 180.02562 * 24 23 22 40 40 H 1.09001 * 109.47101 * 299.99788 * 24 23 22 41 41 H 1.09001 * 109.46949 * 59.99894 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4428 0.0398 5 7 1.5069 2.1504 1.1716 6 6 2.3016 1.8553 2.3714 7 6 1.7389 2.6366 3.5605 8 6 2.5537 2.3335 4.7915 9 1 3.3894 1.6521 4.7316 10 6 2.2328 2.9268 5.9940 11 7 1.2160 3.7578 6.0665 12 14 3.2431 2.5516 7.5197 13 1 4.3240 1.5936 7.1744 14 1 3.8415 3.8078 8.0384 15 1 2.3667 1.9547 8.5593 16 6 1.5832 2.1367 -1.2572 17 6 0.4865 2.9765 -1.2234 18 6 0.0669 3.6148 -2.3780 19 9 -1.0052 4.4361 -2.3434 20 6 0.7450 3.4123 -3.5681 21 6 1.8417 2.5732 -3.6048 22 6 2.2667 1.9374 -2.4473 23 8 3.3496 1.1161 -2.4807 24 6 4.0046 0.9570 -3.7407 25 1 -0.3633 0.4259 -0.9353 26 1 -0.3633 0.5970 0.8364 27 1 -0.3633 -1.0229 0.0989 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8898 30 1 1.4611 3.1443 1.0036 31 1 2.2556 0.7873 2.5839 32 1 3.3378 2.1478 2.2020 33 1 1.7848 3.7047 3.3479 34 1 0.7027 2.3441 3.7299 35 1 0.9905 4.1755 6.9124 36 1 -0.0431 3.1357 -0.2957 37 1 0.4164 3.9105 -4.4682 38 1 2.3707 2.4157 -4.5330 39 1 4.8495 0.2777 -3.6277 40 1 3.3024 0.5454 -4.4658 41 1 4.3611 1.9261 -4.0898 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932467317.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:09 Heat of formation + Delta-G solvation = -69.237609 kcal Electronic energy + Delta-G solvation = -22082.182907 eV Core-core repulsion = 18683.478935 eV Total energy + Delta-G solvation = -3398.703972 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.79362 -40.51417 -37.89142 -36.45243 -33.64649 -31.98295 -30.97933 -29.86581 -28.80769 -27.37553 -25.70156 -23.91856 -22.74580 -22.16381 -20.56980 -19.69538 -18.18258 -17.11228 -17.02387 -16.21223 -16.06398 -15.46193 -15.38410 -14.80542 -14.64408 -14.50576 -14.28238 -13.92445 -13.25167 -13.12839 -13.02267 -12.73655 -12.46223 -12.25159 -11.99848 -11.94300 -11.30064 -11.28842 -11.08736 -10.92444 -10.91036 -10.64903 -10.49669 -10.36718 -9.93596 -9.37161 -9.11614 -9.03296 -8.33447 -8.14629 -7.81135 -5.97595 -3.99806 1.05390 1.13114 3.07646 3.32878 3.40261 3.44257 3.45036 4.22501 4.39059 4.48153 4.55918 4.79919 4.86813 4.89337 5.02194 5.13056 5.22391 5.28379 5.38680 5.51948 5.61768 5.68352 5.77307 5.94370 5.99803 6.06852 6.18970 6.21059 6.33386 6.39563 6.49208 6.50954 6.65793 6.80660 7.02203 7.17431 7.50460 7.75052 7.84287 7.96566 8.10337 8.46180 9.07688 9.63968 11.13884 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019980 B = 0.003856 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.050763 B = 7258.964143 C = 7927.216228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C 0.132 3.868 4 H 0.055 0.945 5 N -0.685 5.685 6 C 0.067 3.933 7 C 0.025 3.975 8 C -0.520 4.520 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.893 5.893 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.284 1.284 16 C -0.076 4.076 17 C -0.101 4.101 18 C 0.061 3.939 19 F -0.141 7.141 20 C -0.122 4.122 21 C -0.184 4.184 22 C 0.119 3.881 23 O -0.308 6.308 24 C 0.026 3.974 25 H 0.042 0.958 26 H 0.076 0.924 27 H 0.041 0.959 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.337 0.663 31 H 0.060 0.940 32 H 0.016 0.984 33 H 0.013 0.987 34 H 0.026 0.974 35 H 0.260 0.740 36 H 0.157 0.843 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.100 0.900 40 H 0.054 0.946 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.694 -4.304 -22.568 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C 0.022 3.978 4 H 0.072 0.928 5 N -0.317 5.317 6 C -0.061 4.061 7 C -0.012 4.012 8 C -0.559 4.559 9 H 0.073 0.927 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.077 4.077 17 C -0.120 4.120 18 C 0.042 3.958 19 F -0.120 7.120 20 C -0.141 4.141 21 C -0.202 4.202 22 C 0.073 3.927 23 O -0.221 6.221 24 C -0.069 4.069 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.155 0.845 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.031 0.969 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.174 0.826 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.189 -4.762 -22.145 22.682 hybrid contribution 1.167 0.646 0.335 1.375 sum 2.355 -4.116 -21.810 22.320 Atomic orbital electron populations 1.21675 0.95356 1.00690 1.02366 1.21409 0.96949 0.94304 1.01290 1.20296 0.96949 0.94053 0.86487 0.92762 1.60769 1.54910 1.13304 1.02674 1.22198 0.93384 1.00821 0.89734 1.19076 0.97034 0.94717 0.90417 1.21212 1.14290 1.26626 0.93748 0.92726 1.24996 0.95236 0.95162 0.98955 1.69983 1.27677 1.29809 1.25771 0.86547 0.80232 0.78075 0.83206 1.19778 1.21072 1.20999 1.19236 0.95476 0.99110 0.93881 1.21067 0.96549 0.95845 0.98502 1.17584 0.87931 0.95364 0.94922 1.91492 1.53108 1.70178 1.97221 1.20853 0.96182 0.99907 0.97182 1.20978 0.99858 1.01586 0.97816 1.18833 0.88129 0.92104 0.93623 1.86145 1.40348 1.62100 1.33491 1.23072 0.97226 1.01926 0.84682 0.93853 0.90478 0.94020 0.91580 0.92434 0.84455 0.92117 0.96587 0.96863 0.95595 0.93078 0.82557 0.84826 0.84749 0.88169 0.92700 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.31 37.16 0.35 -1.68 16 2 C -0.10 -1.45 5.71 -26.73 -0.15 -1.60 16 3 C 0.13 2.00 2.18 -68.86 -0.15 1.85 16 4 H 0.05 0.88 7.53 -51.93 -0.39 0.48 16 5 N -0.68 -11.96 4.57 -107.95 -0.49 -12.45 16 6 C 0.07 1.39 5.43 -3.82 -0.02 1.37 16 7 C 0.02 0.65 5.22 -27.88 -0.15 0.50 16 8 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 9 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 12 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 C -0.08 -1.04 4.19 -104.48 -0.44 -1.47 16 17 C -0.10 -1.37 8.09 -39.53 -0.32 -1.69 16 18 C 0.06 0.79 7.30 -39.42 -0.29 0.50 16 19 F -0.14 -1.93 17.27 2.25 0.04 -1.89 16 20 C -0.12 -1.30 10.02 -39.54 -0.40 -1.70 16 21 C -0.18 -1.86 9.04 -39.44 -0.36 -2.22 16 22 C 0.12 1.45 6.66 -39.23 -0.26 1.18 16 23 O -0.31 -3.51 9.65 -19.57 -0.19 -3.70 16 24 C 0.03 0.18 9.81 101.05 0.99 1.17 16 25 H 0.04 0.59 7.05 -51.93 -0.37 0.22 16 26 H 0.08 1.23 7.37 -51.93 -0.38 0.85 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.00 7.34 -51.93 -0.38 0.62 16 29 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 30 H 0.34 5.82 7.17 -39.29 -0.28 5.53 16 31 H 0.06 1.27 7.30 -51.93 -0.38 0.90 16 32 H 0.02 0.34 8.03 -51.93 -0.42 -0.08 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.16 2.23 6.77 -52.49 -0.36 1.87 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 41 H 0.05 0.32 7.67 -51.93 -0.40 -0.07 16 LS Contribution 338.07 15.07 5.09 5.09 Total: -1.00 -30.76 338.07 -7.59 -38.35 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.15 Total: 1.45 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -1.60 Total: -17.32 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.24 Total: -38.75 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.19 Total: -3.70 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.76 -7.59 -38.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932467317.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.891 kcal (2) G-P(sol) polarization free energy of solvation -30.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds