Wall clock time and date at job start Tue Mar 31 2020 05:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 H 1.08999 * 109.47501 * 177.77838 * 3 2 1 5 5 N 1.46900 * 109.47318 * 57.77159 * 3 2 1 6 6 C 1.46903 * 110.99351 * 81.60577 * 5 3 2 7 7 C 1.53007 * 109.46578 * 178.56301 * 6 5 3 8 8 C 1.50702 * 109.46819 * 179.97438 * 7 6 5 9 9 H 1.07998 * 119.99841 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99876 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99666 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99953 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47265 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47008 * 119.99931 * 12 10 8 15 15 H 1.48500 * 109.46987 * 240.00002 * 12 10 8 16 16 C 1.50707 * 109.46630 * 297.77509 * 3 2 1 17 17 C 1.38172 * 120.01360 * 99.99988 * 16 3 2 18 18 C 1.38437 * 120.02751 * 179.97438 * 17 16 3 19 19 F 1.35098 * 119.96366 * 180.02562 * 18 17 16 20 20 C 1.38468 * 120.06273 * 0.02562 * 18 17 16 21 21 C 1.38132 * 120.03169 * 359.97438 * 20 18 17 22 22 C 1.38685 * 120.01537 * 279.72625 * 16 3 2 23 23 O 1.35947 * 120.03168 * 359.97438 * 22 16 3 24 24 C 1.42902 * 116.99993 * 179.97438 * 23 22 16 25 25 H 1.08999 * 109.46857 * 65.51924 * 1 2 3 26 26 H 1.08998 * 109.47067 * 305.51727 * 1 2 3 27 27 H 1.09000 * 109.47026 * 185.52108 * 1 2 3 28 28 H 1.09005 * 109.46871 * 119.99319 * 2 1 3 29 29 H 1.08994 * 109.47731 * 239.99399 * 2 1 3 30 30 H 1.00900 * 111.00036 * 205.55527 * 5 3 2 31 31 H 1.08994 * 109.46864 * 298.55631 * 6 5 3 32 32 H 1.08994 * 109.47486 * 58.56318 * 6 5 3 33 33 H 1.09004 * 109.46869 * 299.99833 * 7 6 5 34 34 H 1.08994 * 109.47198 * 59.99841 * 7 6 5 35 35 H 0.96999 * 119.99453 * 180.02562 * 11 10 8 36 36 H 1.08001 * 119.98536 * 0.02562 * 17 16 3 37 37 H 1.07998 * 119.98909 * 179.97438 * 20 18 17 38 38 H 1.07997 * 120.02032 * 180.02562 * 21 20 18 39 39 H 1.08998 * 109.46521 * 180.02562 * 24 23 22 40 40 H 1.09001 * 109.47101 * 299.99788 * 24 23 22 41 41 H 1.09001 * 109.46949 * 59.99894 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4428 0.0398 5 7 1.5069 2.1504 1.1716 6 6 2.3016 1.8553 2.3714 7 6 1.7389 2.6366 3.5605 8 6 2.5537 2.3335 4.7915 9 1 3.3894 1.6521 4.7316 10 6 2.2328 2.9268 5.9940 11 7 1.2160 3.7578 6.0665 12 14 3.2431 2.5516 7.5197 13 1 4.3240 1.5936 7.1744 14 1 3.8415 3.8078 8.0384 15 1 2.3667 1.9547 8.5593 16 6 1.5832 2.1367 -1.2572 17 6 0.4865 2.9765 -1.2234 18 6 0.0669 3.6148 -2.3780 19 9 -1.0052 4.4361 -2.3434 20 6 0.7450 3.4123 -3.5681 21 6 1.8417 2.5732 -3.6048 22 6 2.2667 1.9374 -2.4473 23 8 3.3496 1.1161 -2.4807 24 6 4.0046 0.9570 -3.7407 25 1 -0.3633 0.4259 -0.9353 26 1 -0.3633 0.5970 0.8364 27 1 -0.3633 -1.0229 0.0989 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8898 30 1 1.4611 3.1443 1.0036 31 1 2.2556 0.7873 2.5839 32 1 3.3378 2.1478 2.2020 33 1 1.7848 3.7047 3.3479 34 1 0.7027 2.3441 3.7299 35 1 0.9905 4.1755 6.9124 36 1 -0.0431 3.1357 -0.2957 37 1 0.4164 3.9105 -4.4682 38 1 2.3707 2.4157 -4.5330 39 1 4.8495 0.2777 -3.6277 40 1 3.3024 0.5454 -4.4658 41 1 4.3611 1.9261 -4.0898 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932467317.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:08 Heat of formation + Delta-G solvation = -87.182293 kcal Electronic energy + Delta-G solvation = -22082.961047 eV Core-core repulsion = 18683.478935 eV Total energy + Delta-G solvation = -3399.482112 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.80053 -41.42241 -38.92824 -37.59620 -35.54018 -33.74159 -31.99383 -30.74919 -30.56237 -28.04869 -27.11068 -25.66237 -23.84241 -23.18285 -22.27851 -20.92036 -19.04189 -18.51341 -18.11515 -17.89906 -16.91973 -16.77133 -16.45591 -16.33615 -15.67468 -15.62928 -15.41258 -15.25546 -14.83096 -14.47808 -14.19218 -13.87659 -13.64735 -13.48811 -13.23518 -13.12946 -12.90488 -12.71109 -12.45644 -12.43599 -12.14199 -11.91026 -11.86079 -11.73453 -11.48118 -11.36012 -11.17572 -10.56272 -10.00635 -9.31892 -9.03372 -8.19599 -6.30778 0.13989 0.20234 1.40605 1.41100 1.54446 2.34764 2.41025 2.52665 3.14089 3.22127 3.29259 3.59408 3.83384 4.03546 4.16074 4.17768 4.32580 4.43856 4.45882 4.50814 4.55723 4.62896 4.66098 4.78767 4.82582 4.85317 5.01219 5.08280 5.12534 5.14011 5.18964 5.23961 5.34985 5.46215 5.59832 5.68939 5.72787 5.81482 6.14961 6.28465 6.37953 6.50611 6.86540 7.38462 8.92779 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019980 B = 0.003856 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.050763 B = 7258.964143 C = 7927.216228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 C 0.137 3.863 4 H 0.046 0.954 5 N -0.683 5.683 6 C 0.087 3.913 7 C 0.033 3.967 8 C -0.543 4.543 9 H 0.060 0.940 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.966 3.034 13 H -0.262 1.262 14 H -0.278 1.278 15 H -0.278 1.278 16 C -0.094 4.094 17 C -0.111 4.111 18 C 0.042 3.958 19 F -0.151 7.151 20 C -0.110 4.110 21 C -0.173 4.173 22 C 0.120 3.880 23 O -0.327 6.327 24 C 0.015 3.985 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.336 0.664 31 H 0.061 0.939 32 H 0.016 0.984 33 H -0.011 1.011 34 H -0.004 1.004 35 H 0.263 0.737 36 H 0.138 0.862 37 H 0.163 0.837 38 H 0.171 0.829 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.161 -5.192 -24.511 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.136 4.136 3 C 0.028 3.972 4 H 0.064 0.936 5 N -0.315 5.315 6 C -0.042 4.042 7 C -0.004 4.004 8 C -0.581 4.581 9 H 0.078 0.922 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.791 3.209 13 H -0.186 1.186 14 H -0.204 1.204 15 H -0.203 1.203 16 C -0.096 4.096 17 C -0.130 4.130 18 C 0.022 3.978 19 F -0.130 7.130 20 C -0.128 4.128 21 C -0.191 4.191 22 C 0.073 3.927 23 O -0.241 6.241 24 C -0.079 4.079 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.155 0.845 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.008 0.992 34 H 0.015 0.985 35 H 0.072 0.928 36 H 0.156 0.844 37 H 0.181 0.819 38 H 0.189 0.811 39 H 0.133 0.867 40 H 0.090 0.910 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.663 -5.663 -24.113 24.912 hybrid contribution 0.722 0.919 0.828 1.432 sum 3.386 -4.744 -23.286 24.004 Atomic orbital electron populations 1.21583 0.95232 1.00998 1.01542 1.21392 0.96963 0.93774 1.01476 1.20234 0.96325 0.94426 0.86218 0.93608 1.60680 1.54415 1.13604 1.02809 1.21793 0.93234 0.99733 0.89423 1.18911 0.95418 0.93857 0.92257 1.21634 1.14724 1.26840 0.94905 0.92202 1.25962 0.96369 0.94763 1.02586 1.70118 1.29359 1.30818 1.26890 0.85380 0.78696 0.78225 0.78621 1.18551 1.20359 1.20347 1.19045 0.96415 1.00169 0.93934 1.20917 0.96958 0.96746 0.98404 1.17773 0.88398 0.95944 0.95648 1.91464 1.53681 1.70536 1.97308 1.21193 0.95415 0.99109 0.97128 1.21339 0.99284 1.00061 0.98418 1.18907 0.88148 0.92100 0.93523 1.86126 1.40069 1.61728 1.36155 1.23413 0.97859 1.03268 0.83385 0.93339 0.92956 0.92724 0.92670 0.90811 0.84489 0.92102 0.96616 0.99220 0.98542 0.92786 0.84408 0.81948 0.81132 0.86708 0.90957 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.31 71.98 0.67 -3.17 16 2 C -0.10 -2.78 5.71 30.59 0.17 -2.61 16 3 C 0.14 4.20 2.18 44.17 0.10 4.30 16 4 H 0.05 1.48 7.53 -2.39 -0.02 1.47 16 5 N -0.68 -24.94 4.57 -495.44 -2.26 -27.20 16 6 C 0.09 3.76 5.43 86.30 0.47 4.23 16 7 C 0.03 1.80 5.22 29.85 0.16 1.95 16 8 C -0.54 -31.51 9.11 25.60 0.23 -31.27 16 9 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 10 C 0.00 0.06 5.46 84.66 0.46 0.53 16 11 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 12 Si 0.97 44.90 29.54 68.60 2.03 46.92 16 13 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 16 C -0.09 -2.55 4.19 -19.77 -0.08 -2.63 16 17 C -0.11 -3.09 8.09 22.30 0.18 -2.91 16 18 C 0.04 1.04 7.30 22.37 0.16 1.20 16 19 F -0.15 -4.12 17.27 44.97 0.78 -3.35 16 20 C -0.11 -2.04 10.02 22.30 0.22 -1.81 16 21 C -0.17 -2.90 9.04 22.36 0.20 -2.70 16 22 C 0.12 2.66 6.66 22.49 0.15 2.81 16 23 O -0.33 -6.70 9.65 -92.95 -0.90 -7.60 16 24 C 0.01 0.15 9.81 113.37 1.11 1.27 16 25 H 0.05 1.30 7.05 -2.39 -0.02 1.28 16 26 H 0.05 1.73 7.37 -2.39 -0.02 1.71 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.67 7.34 -2.38 -0.02 1.65 16 29 H 0.07 1.85 8.07 -2.39 -0.02 1.84 16 30 H 0.34 12.33 7.17 -89.69 -0.64 11.69 16 31 H 0.06 2.62 7.30 -2.39 -0.02 2.60 16 32 H 0.02 0.67 8.03 -2.39 -0.02 0.66 16 33 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 34 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 35 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.14 4.23 6.77 -2.91 -0.02 4.21 16 37 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 38 H 0.17 1.60 6.30 -2.91 -0.02 1.58 16 39 H 0.11 0.85 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.52 7.65 -2.39 -0.02 0.50 16 41 H 0.07 0.54 7.67 -2.39 -0.02 0.52 16 Total: -1.00 -67.74 338.07 4.52 -63.22 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.38 Total: 16.26 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: 4.21 Total: -30.82 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -1.98 Total: -84.64 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.90 Total: -7.60 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.78 Total: -3.35 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.74 4.52 -63.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932467317.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.967 kcal (2) G-P(sol) polarization free energy of solvation -67.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds