Wall clock time and date at job start Tue Mar 31 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46218 * 2 1 4 4 N 1.46498 * 109.47203 * 119.99591 * 2 1 3 5 5 C 1.34781 * 120.00157 * 275.00727 * 4 2 1 6 6 O 1.21587 * 119.99744 * 359.97438 * 5 4 2 7 7 N 1.34776 * 119.99826 * 179.97438 * 5 4 2 8 8 C 1.46501 * 119.99672 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47018 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.47056 * 180.02562 * 9 8 7 11 11 C 1.50707 * 109.47145 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99778 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99964 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00093 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99512 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47186 * 90.00301 * 15 13 11 17 17 H 1.48504 * 109.46646 * 209.99913 * 15 13 11 18 18 H 1.48502 * 109.47396 * 329.99680 * 15 13 11 19 19 C 1.50697 * 109.47357 * 239.99952 * 2 1 3 20 20 N 1.30519 * 126.34476 * 284.99585 * 19 2 1 21 21 N 1.28600 * 109.66808 * 179.73098 * 20 19 2 22 22 C 1.30516 * 109.67696 * 0.44987 * 21 20 19 23 23 N 1.35495 * 107.30468 * 359.55808 * 22 21 20 24 24 C 1.46499 * 126.97946 * 180.26092 * 23 22 21 25 25 H 1.09006 * 109.47150 * 60.00641 * 1 2 3 26 26 H 1.09007 * 109.46681 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47661 * 299.99910 * 1 2 3 28 28 H 0.96999 * 120.00142 * 94.99990 * 4 2 1 29 29 H 0.96999 * 120.00018 * 359.97438 * 7 5 4 30 30 H 1.09007 * 109.46848 * 300.00088 * 8 7 5 31 31 H 1.08998 * 109.47326 * 59.99780 * 8 7 5 32 32 H 1.09007 * 109.46977 * 299.99511 * 9 8 7 33 33 H 1.08998 * 109.47658 * 59.99486 * 9 8 7 34 34 H 1.08996 * 109.46902 * 299.99184 * 10 9 8 35 35 H 1.08998 * 109.47522 * 59.99139 * 10 9 8 36 36 H 0.97000 * 119.99879 * 180.02562 * 14 13 11 37 37 H 1.08002 * 126.35125 * 179.82818 * 22 21 20 38 38 H 1.09004 * 109.47293 * 90.03308 * 24 23 22 39 39 H 1.09007 * 109.47309 * 210.02845 * 24 23 22 40 40 H 1.09000 * 109.47123 * 330.02746 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8581 1.1617 2.4116 7 7 2.5958 -0.6536 3.4578 8 6 2.7361 0.0775 4.7196 9 6 3.2604 -0.8687 5.8015 10 6 3.4063 -0.1054 7.1195 11 6 3.9222 -1.0376 8.1854 12 1 4.1252 -2.0712 7.9468 13 6 4.1349 -0.5709 9.4653 14 7 3.8882 0.6878 9.7557 15 14 4.7737 -1.7266 10.7865 16 1 6.2583 -1.6961 10.7953 17 1 4.2619 -1.2941 12.1118 18 1 4.3085 -3.1080 10.5030 19 6 2.0324 -0.7104 -1.2304 20 7 2.0338 -1.9998 -1.4328 21 7 2.5293 -2.2555 -2.5916 22 6 2.8753 -1.1416 -3.1772 23 7 2.5663 -0.1289 -2.3316 24 6 2.7686 1.3037 -2.5614 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 2.2491 -1.6317 1.1527 29 1 2.8258 -1.5949 3.4144 30 1 3.4378 0.9009 4.5863 31 1 1.7657 0.4722 5.0207 32 1 2.5589 -1.6924 5.9349 33 1 4.2308 -1.2631 5.5003 34 1 4.1075 0.7184 6.9865 35 1 2.4357 0.2887 7.4206 36 1 4.0383 1.0162 10.6560 37 1 3.3209 -1.0446 -4.1562 38 1 1.8827 1.7240 -3.0375 39 1 2.9406 1.8039 -1.6083 40 1 3.6330 1.4493 -3.2093 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115985680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:22 Heat of formation + Delta-G solvation = 37.246382 kcal Electronic energy + Delta-G solvation = -21179.462294 eV Core-core repulsion = 17837.588527 eV Total energy + Delta-G solvation = -3341.873767 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.54972 -39.94609 -36.39035 -35.46840 -35.04961 -33.34518 -31.89790 -30.74245 -29.59515 -28.12957 -26.61522 -24.52369 -23.11174 -22.74275 -21.07721 -20.68798 -20.26161 -18.45079 -17.43879 -16.82581 -16.62781 -16.19285 -15.49562 -15.33585 -14.98262 -14.51443 -14.33843 -14.15317 -13.93823 -13.79457 -13.37625 -13.15819 -12.46163 -12.26959 -11.98704 -11.79718 -11.77399 -11.63655 -10.89446 -10.73904 -10.71209 -10.64752 -10.58156 -10.19635 -9.84665 -9.69356 -9.43277 -9.34874 -9.11340 -8.65591 -8.36027 -6.00817 -4.03680 1.31692 1.93847 2.45895 2.82294 3.27782 3.31934 3.38290 3.41441 3.71665 4.07435 4.16846 4.33656 4.45980 4.48062 4.57974 4.80257 4.86915 5.01095 5.24115 5.35086 5.42974 5.57421 5.66622 5.72096 5.82080 5.94149 6.18740 6.29915 6.35840 6.51839 6.63491 6.79879 7.02594 7.05582 7.65033 7.77766 7.98252 8.09688 8.32456 8.39315 8.67853 9.03048 9.60474 11.10512 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.036610 B = 0.002480 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.633788 B =11289.613206 C =11592.587885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.256 3.744 3 H 0.103 0.897 4 N -0.741 5.741 5 C 0.705 3.295 6 O -0.594 6.594 7 N -0.738 5.738 8 C 0.135 3.865 9 C -0.121 4.121 10 C 0.024 3.976 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.167 3.833 20 N -0.282 5.282 21 N -0.295 5.295 22 C 0.151 3.849 23 N -0.471 5.471 24 C 0.066 3.934 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.405 0.595 29 H 0.396 0.604 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.221 0.779 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.511 0.828 -27.745 27.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.147 3.853 3 H 0.121 0.879 4 N -0.399 5.399 5 C 0.405 3.595 6 O -0.473 6.473 7 N -0.392 5.392 8 C 0.012 3.988 9 C -0.159 4.159 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.101 4.101 20 N -0.123 5.123 21 N -0.134 5.134 22 C -0.136 4.136 23 N -0.161 5.161 24 C -0.076 4.076 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.240 0.760 29 H 0.229 0.771 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.237 0.763 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.964 0.609 -27.292 27.585 hybrid contribution 0.905 -0.024 0.298 0.953 sum -3.059 0.585 -26.995 27.174 Atomic orbital electron populations 1.22191 0.92840 1.03561 1.03129 1.18760 0.94473 0.94778 0.77263 0.87939 1.45038 1.72593 1.14200 1.08057 1.15914 0.78417 0.85031 0.80161 1.90911 1.57443 1.14285 1.84636 1.45384 1.70142 1.14024 1.09646 1.21536 1.01328 0.95207 0.80706 1.21900 0.99738 0.98248 0.96037 1.19027 0.97501 0.95466 0.89354 1.21214 1.43881 0.96384 0.94527 0.92635 1.25028 0.95645 0.95116 0.98696 1.69965 1.48785 1.14169 1.20412 0.86582 0.79054 0.81112 0.81172 1.20678 1.21215 1.19878 1.24914 1.01811 0.91357 0.92034 1.74219 1.17455 1.10558 1.10087 1.74281 1.14211 1.23006 1.01897 1.26517 1.04213 0.83395 0.99494 1.46174 1.45617 1.09724 1.14621 1.22243 1.04131 0.76331 1.04943 0.91800 0.91228 0.90193 0.76020 0.77062 0.91936 0.91814 0.92661 0.92745 0.96274 0.96218 0.92943 0.76292 0.89442 0.88578 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.47 37.16 0.35 -1.11 16 2 C 0.26 2.56 2.97 -69.08 -0.20 2.36 16 3 H 0.10 1.01 6.34 -51.93 -0.33 0.68 16 4 N -0.74 -8.58 5.07 -59.81 -0.30 -8.89 16 5 C 0.70 10.50 8.53 -86.91 -0.74 9.75 16 6 O -0.59 -10.84 16.01 5.29 0.08 -10.75 16 7 N -0.74 -10.74 5.56 -65.22 -0.36 -11.10 16 8 C 0.14 2.38 5.67 -4.04 -0.02 2.36 16 9 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 10 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 11 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 12 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 15 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.17 1.66 6.82 -154.99 -1.06 0.61 16 20 N -0.28 -3.51 11.92 32.79 0.39 -3.11 16 21 N -0.29 -3.48 12.21 29.69 0.36 -3.12 16 22 C 0.15 1.14 12.74 -89.95 -1.15 -0.01 16 23 N -0.47 -3.35 3.15 -122.69 -0.39 -3.74 16 24 C 0.07 0.19 11.00 59.85 0.66 0.85 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.40 4.30 8.37 -40.82 -0.34 3.96 16 29 H 0.40 4.77 8.49 -40.82 -0.35 4.43 16 30 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.22 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 39 H 0.10 0.31 7.06 -51.93 -0.37 -0.06 16 40 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -36.05 344.01 -8.17 -44.21 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.00 Total: 1.52 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -2.85 Total: -0.63 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.44 Total: -56.09 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.05 -8.17 -44.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115985680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.457 kcal (2) G-P(sol) polarization free energy of solvation -36.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds