Wall clock time and date at job start Tue Mar 31 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47245 * 2 1 4 4 N 1.46497 * 109.47324 * 119.99797 * 2 1 3 5 5 C 1.34777 * 119.99842 * 275.00128 * 4 2 1 6 6 O 1.21583 * 120.00079 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00039 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00282 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47143 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47075 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47238 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99539 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99966 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99942 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99891 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47267 * 60.00352 * 15 13 11 17 17 H 1.48498 * 109.47113 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47281 * 300.00253 * 15 13 11 19 19 C 1.50696 * 109.47165 * 239.99835 * 2 1 3 20 20 N 1.30839 * 125.96132 * 284.97840 * 19 2 1 21 21 C 1.33236 * 109.82829 * 180.02562 * 20 19 2 22 22 N 1.30707 * 108.95130 * 359.97438 * 21 20 19 23 23 N 1.34432 * 125.96525 * 105.00102 * 19 2 1 24 24 C 1.46499 * 126.82005 * 0.23890 * 23 19 2 25 25 H 1.08991 * 109.47085 * 60.00068 * 1 2 3 26 26 H 1.08993 * 109.47025 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46713 * 300.00209 * 1 2 3 28 28 H 0.96997 * 120.00584 * 94.99905 * 4 2 1 29 29 H 0.97005 * 120.00046 * 0.02562 * 7 5 4 30 30 H 1.08995 * 109.47063 * 300.00058 * 8 7 5 31 31 H 1.09004 * 109.46759 * 59.99995 * 8 7 5 32 32 H 1.09011 * 109.46977 * 300.00245 * 9 8 7 33 33 H 1.08997 * 109.47086 * 60.00014 * 9 8 7 34 34 H 1.08998 * 109.47292 * 300.00116 * 10 9 8 35 35 H 1.09004 * 109.47037 * 59.99847 * 10 9 8 36 36 H 0.97004 * 119.99790 * 180.02562 * 14 13 11 37 37 H 1.08005 * 125.52502 * 180.02562 * 21 20 19 38 38 H 1.08995 * 109.47448 * 269.71499 * 24 23 19 39 39 H 1.09003 * 109.46707 * 29.71362 * 24 23 19 40 40 H 1.09001 * 109.46877 * 149.70832 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8583 1.1617 2.4115 7 7 2.5959 -0.6535 3.4577 8 6 2.7363 0.0775 4.7195 9 6 3.2607 -0.8687 5.8015 10 6 3.4067 -0.1055 7.1194 11 6 3.9226 -1.0376 8.1853 12 1 4.1263 -2.0710 7.9464 13 6 4.1355 -0.5709 9.4651 14 7 3.8879 0.6875 9.7557 15 14 4.7756 -1.7262 10.7861 16 1 6.0977 -2.2634 10.3756 17 1 4.9172 -0.9854 12.0652 18 1 3.8200 -2.8484 10.9677 19 6 2.0323 -0.7104 -1.2304 20 7 2.0304 -2.0042 -1.4252 21 6 2.5478 -2.2820 -2.6212 22 7 2.8871 -1.1639 -3.2069 23 7 2.5610 -0.1255 -2.3192 24 6 2.7624 1.3095 -2.5346 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.2491 -1.6317 1.1527 29 1 2.8266 -1.5947 3.4142 30 1 3.4380 0.9008 4.5863 31 1 1.7659 0.4722 5.0207 32 1 2.5592 -1.6925 5.9348 33 1 4.2311 -1.2631 5.5001 34 1 4.1079 0.7184 6.9864 35 1 2.4361 0.2886 7.4206 36 1 4.0380 1.0159 10.6561 37 1 2.6666 -3.2707 -3.0393 38 1 1.8781 1.7332 -3.0103 39 1 2.9299 1.8007 -1.5760 40 1 3.6293 1.4622 -3.1774 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116751951.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:13 Heat of formation + Delta-G solvation = 46.849028 kcal Electronic energy + Delta-G solvation = -21157.063162 eV Core-core repulsion = 17815.605798 eV Total energy + Delta-G solvation = -3341.457365 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.56124 -39.94002 -36.35111 -35.11305 -34.46607 -33.35420 -32.03831 -30.98821 -29.89163 -27.72036 -26.62641 -24.50313 -23.01941 -22.43612 -20.93023 -20.58103 -20.24833 -18.46279 -17.14392 -16.71802 -16.41722 -16.14544 -15.50004 -15.22192 -14.78205 -14.43064 -14.29434 -14.11261 -13.75862 -13.62659 -13.59617 -13.15465 -12.58009 -12.27322 -12.14480 -11.80864 -11.78222 -11.62638 -10.87990 -10.72056 -10.61845 -10.42989 -10.22953 -10.13477 -9.98987 -9.85185 -9.44162 -9.37865 -9.13247 -8.67072 -8.36316 -6.01211 -4.04257 1.12913 1.81523 2.48722 2.80423 3.25227 3.32696 3.37416 3.39448 3.55634 4.07871 4.31698 4.34714 4.45733 4.60940 4.69685 4.80441 4.96400 5.07029 5.32772 5.34553 5.51888 5.69783 5.81147 5.83567 5.88963 6.04105 6.17422 6.24013 6.33703 6.50625 6.62493 6.78348 7.01576 7.04157 7.64151 7.67831 7.77123 7.97660 8.08359 8.38631 8.66170 9.02258 9.59851 11.10058 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.036265 B = 0.002480 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.910244 B =11288.386449 C =11601.394522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.248 3.752 3 H 0.107 0.893 4 N -0.740 5.740 5 C 0.705 3.295 6 O -0.593 6.593 7 N -0.738 5.738 8 C 0.135 3.865 9 C -0.121 4.121 10 C 0.024 3.976 11 C -0.523 4.523 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.271 3.729 20 N -0.534 5.534 21 C 0.201 3.799 22 N -0.319 5.319 23 N -0.372 5.372 24 C 0.089 3.911 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.405 0.595 29 H 0.396 0.604 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.262 0.738 37 H 0.220 0.780 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.601 -2.125 -25.726 26.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.139 3.861 3 H 0.125 0.875 4 N -0.398 5.398 5 C 0.404 3.596 6 O -0.472 6.472 7 N -0.392 5.392 8 C 0.012 3.988 9 C -0.159 4.159 10 C -0.013 4.013 11 C -0.561 4.561 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.006 4.006 20 N -0.262 5.262 21 C -0.102 4.102 22 N -0.146 5.146 23 N -0.162 5.162 24 C -0.053 4.053 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.241 0.759 29 H 0.229 0.771 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.236 0.764 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.622 -0.984 -26.010 26.436 hybrid contribution 0.626 -1.362 0.694 1.652 sum -3.996 -2.345 -25.316 25.736 Atomic orbital electron populations 1.22184 0.92550 1.03670 1.03324 1.18971 0.94835 0.94944 0.77380 0.87508 1.45009 1.72613 1.14230 1.07971 1.15918 0.78444 0.85041 0.80160 1.90916 1.57377 1.14264 1.84605 1.45381 1.70129 1.14018 1.09644 1.21540 1.01352 0.95217 0.80685 1.21899 0.99717 0.98241 0.96048 1.19021 0.97502 0.95462 0.89334 1.21172 1.44041 0.96358 0.94545 0.92696 1.25025 0.95634 0.95106 0.98686 1.69956 1.48716 1.14160 1.20480 0.86641 0.79427 0.80846 0.80974 1.20260 1.21285 1.20238 1.24387 0.95209 0.89627 0.91425 1.70404 1.24745 1.12163 1.18894 1.26014 0.95995 0.98537 0.89625 1.78088 1.24911 0.95546 1.16086 1.50256 1.45256 1.08148 1.12573 1.22095 1.04318 0.74255 1.04632 0.91667 0.91126 0.90037 0.75926 0.77089 0.91908 0.91796 0.92678 0.92753 0.96266 0.96225 0.92874 0.76378 0.89685 0.88491 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.47 37.16 0.35 -1.04 16 2 C 0.25 2.40 2.95 -69.09 -0.20 2.20 16 3 H 0.11 1.03 6.23 -51.93 -0.32 0.70 16 4 N -0.74 -8.17 5.07 -59.82 -0.30 -8.47 16 5 C 0.70 10.21 8.53 -86.92 -0.74 9.47 16 6 O -0.59 -10.63 16.01 5.29 0.08 -10.55 16 7 N -0.74 -10.44 5.56 -65.22 -0.36 -10.80 16 8 C 0.14 2.34 5.67 -4.04 -0.02 2.32 16 9 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 10 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 11 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 12 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 15 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 C 0.27 2.68 6.78 -155.69 -1.06 1.63 16 20 N -0.53 -5.65 10.88 -11.97 -0.13 -5.78 16 21 C 0.20 1.89 13.03 -91.82 -1.20 0.69 16 22 N -0.32 -3.33 12.70 29.29 0.37 -2.96 16 23 N -0.37 -3.44 4.04 -65.10 -0.26 -3.70 16 24 C 0.09 0.47 11.29 59.85 0.68 1.15 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.41 3.99 8.36 -40.82 -0.34 3.65 16 29 H 0.40 4.58 8.49 -40.82 -0.35 4.23 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.22 1.22 8.06 -52.48 -0.42 0.79 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.10 0.42 6.97 -51.93 -0.36 0.06 16 40 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -34.71 344.64 -8.56 -43.27 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.99 Total: 2.29 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -2.88 Total: 1.09 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.05 Total: -57.73 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.71 -8.56 -43.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116751951.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.122 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds