Wall clock time and date at job start Tue Mar 31 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47229 * 2 1 4 4 N 1.46500 * 109.47098 * 240.00287 * 2 1 3 5 5 C 1.34773 * 120.00431 * 85.00044 * 4 2 1 6 6 O 1.21593 * 119.99894 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00097 * 179.72742 * 5 4 2 8 8 C 1.46504 * 119.99854 * 180.27545 * 7 5 4 9 9 C 1.53004 * 109.46928 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.46988 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46983 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99624 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99634 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00657 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99703 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47214 * 90.00059 * 15 13 11 17 17 H 1.48501 * 109.47474 * 210.00166 * 15 13 11 18 18 H 1.48500 * 109.47089 * 330.00544 * 15 13 11 19 19 C 1.50698 * 109.47387 * 119.99899 * 2 1 3 20 20 N 1.30829 * 125.96238 * 74.68639 * 19 2 1 21 21 C 1.33240 * 109.83028 * 179.86997 * 20 19 2 22 22 N 1.30707 * 108.94550 * 0.40146 * 21 20 19 23 23 N 1.34433 * 125.96224 * 255.00584 * 19 2 1 24 24 C 1.46497 * 126.82143 * 0.02562 * 23 19 2 25 25 H 1.08994 * 109.47099 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47061 * 300.00108 * 1 2 3 27 27 H 1.09004 * 109.47132 * 59.99646 * 1 2 3 28 28 H 0.97000 * 119.99456 * 264.99607 * 4 2 1 29 29 H 0.97000 * 119.99736 * 0.26819 * 7 5 4 30 30 H 1.08998 * 109.46968 * 299.99782 * 8 7 5 31 31 H 1.08997 * 109.47198 * 59.99605 * 8 7 5 32 32 H 1.09007 * 109.46621 * 299.99773 * 9 8 7 33 33 H 1.08997 * 109.46991 * 59.99522 * 9 8 7 34 34 H 1.08998 * 109.46983 * 299.99930 * 10 9 8 35 35 H 1.08997 * 109.47123 * 59.99717 * 10 9 8 36 36 H 0.96990 * 120.00229 * 180.02562 * 14 13 11 37 37 H 1.07999 * 125.52247 * 180.13344 * 21 20 19 38 38 H 1.08998 * 109.47200 * 90.00632 * 24 23 19 39 39 H 1.09009 * 109.47064 * 210.00624 * 24 23 19 40 40 H 1.08999 * 109.47565 * 330.00267 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8574 1.1614 -2.4119 7 7 2.6015 -0.6522 -3.4562 8 6 2.7472 0.0801 -4.7167 9 6 3.2773 -0.8647 -5.7971 10 6 3.4289 -0.1000 -7.1136 11 6 3.9517 -1.0304 -8.1776 12 1 4.1558 -2.0636 -7.9385 13 6 4.1693 -0.5625 -9.4561 14 7 3.9211 0.6958 -9.7471 15 14 4.8166 -1.7160 -10.7752 16 1 3.6751 -2.3610 -11.4725 17 1 5.6231 -0.9447 -11.7550 18 1 5.6662 -2.7594 -10.1469 19 6 2.0324 -0.7104 1.2304 20 7 2.0248 -2.0037 1.4278 21 6 2.5463 -2.2817 2.6220 22 7 2.8865 -1.1635 3.2072 23 7 2.5610 -0.1253 2.3193 24 6 2.7572 1.3100 2.5367 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.2490 -1.6317 -1.1526 29 1 2.8322 -1.5934 -3.4126 30 1 1.7779 0.4743 -5.0219 31 1 3.4475 0.9040 -4.5794 32 1 4.2468 -1.2584 -5.4915 33 1 2.5773 -1.6888 -5.9344 34 1 2.4593 0.2934 -7.4189 35 1 4.1286 0.7244 -6.9765 36 1 4.0739 1.0248 -10.6466 37 1 2.6643 -3.2703 3.0405 38 1 1.8702 1.7304 3.0105 39 1 3.6219 1.4648 3.1823 40 1 2.9259 1.8029 1.5793 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116751952.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:15 Heat of formation + Delta-G solvation = 46.793543 kcal Electronic energy + Delta-G solvation = -21157.033708 eV Core-core repulsion = 17815.573938 eV Total energy + Delta-G solvation = -3341.459771 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.56217 -39.93929 -36.35123 -35.11248 -34.46606 -33.35532 -32.03987 -30.98899 -29.89046 -27.72047 -26.62798 -24.50351 -23.02102 -22.43653 -20.93123 -20.58220 -20.24902 -18.46293 -17.14617 -16.71750 -16.41680 -16.14754 -15.49968 -15.22305 -14.78283 -14.42654 -14.29456 -14.11285 -13.75916 -13.62534 -13.59634 -13.15587 -12.58017 -12.28239 -12.14354 -11.80516 -11.78311 -11.62700 -10.90069 -10.72401 -10.59099 -10.42969 -10.23021 -10.13442 -9.98987 -9.85604 -9.44498 -9.37895 -9.12182 -8.67111 -8.36700 -6.01458 -4.04443 1.12978 1.81446 2.48647 2.80555 3.25126 3.31295 3.37710 3.40589 3.55629 4.07897 4.31710 4.34644 4.45620 4.60977 4.69621 4.80427 4.96381 5.06956 5.32676 5.34412 5.51936 5.69742 5.81120 5.83590 5.88906 6.04112 6.17391 6.23979 6.33668 6.50580 6.62453 6.78321 7.01504 7.04113 7.64278 7.67835 7.77011 7.97548 8.08324 8.38510 8.66143 9.02327 9.59777 11.09858 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.036189 B = 0.002480 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.534871 B =11286.148896 C =11598.578513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.248 3.752 3 H 0.107 0.893 4 N -0.740 5.740 5 C 0.705 3.295 6 O -0.593 6.593 7 N -0.738 5.738 8 C 0.135 3.865 9 C -0.121 4.121 10 C 0.024 3.976 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.271 3.729 20 N -0.534 5.534 21 C 0.201 3.799 22 N -0.319 5.319 23 N -0.372 5.372 24 C 0.089 3.911 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.405 0.595 29 H 0.396 0.604 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.220 0.780 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.683 -2.154 25.721 26.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.139 3.861 3 H 0.125 0.875 4 N -0.398 5.398 5 C 0.404 3.596 6 O -0.472 6.472 7 N -0.392 5.392 8 C 0.012 3.988 9 C -0.159 4.159 10 C -0.014 4.014 11 C -0.560 4.560 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.006 4.006 20 N -0.262 5.262 21 C -0.102 4.102 22 N -0.146 5.146 23 N -0.162 5.162 24 C -0.053 4.053 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.241 0.759 29 H 0.229 0.771 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.236 0.764 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.702 -1.016 26.011 26.453 hybrid contribution 0.616 -1.352 -0.704 1.644 sum -4.087 -2.368 25.308 25.745 Atomic orbital electron populations 1.22186 0.92552 1.03670 1.03322 1.18972 0.94831 0.94943 0.77383 0.87508 1.45008 1.72618 1.14236 1.07957 1.15918 0.78451 0.85037 0.80159 1.90918 1.57414 1.14259 1.84575 1.45379 1.69918 1.14037 1.09833 1.21541 1.01324 0.95198 0.80734 1.21900 0.99694 0.98251 0.96060 1.19026 0.97493 0.95468 0.89368 1.21207 1.43737 0.96420 0.94662 0.92643 1.25027 0.95660 0.95091 0.98693 1.69962 1.48824 1.14128 1.20402 0.86585 0.78935 0.80795 0.81616 1.20653 1.21223 1.19904 1.24384 0.95167 0.89640 0.91458 1.70402 1.24668 1.12190 1.18944 1.26013 0.95941 0.98536 0.89682 1.78085 1.24941 0.95548 1.16052 1.50256 1.45355 1.08135 1.12488 1.22095 1.04339 0.74240 1.04627 0.91123 0.91677 0.90032 0.75931 0.77089 0.91800 0.91903 0.92749 0.92680 0.96221 0.96257 0.92931 0.76379 0.89693 0.88555 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.47 37.16 0.35 -1.04 16 2 C 0.25 2.40 2.95 -69.09 -0.20 2.20 16 3 H 0.11 1.03 6.24 -51.92 -0.32 0.70 16 4 N -0.74 -8.16 5.07 -59.81 -0.30 -8.47 16 5 C 0.70 10.20 8.53 -86.92 -0.74 9.46 16 6 O -0.59 -10.63 16.01 5.28 0.08 -10.55 16 7 N -0.74 -10.43 5.56 -65.22 -0.36 -10.80 16 8 C 0.14 2.34 5.67 -4.04 -0.02 2.32 16 9 C -0.12 -2.33 5.27 -26.73 -0.14 -2.48 16 10 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 11 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 12 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 15 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 C 0.27 2.68 6.78 -155.69 -1.05 1.63 16 20 N -0.53 -5.65 10.89 -11.97 -0.13 -5.78 16 21 C 0.20 1.89 13.03 -91.82 -1.20 0.69 16 22 N -0.32 -3.33 12.70 29.29 0.37 -2.96 16 23 N -0.37 -3.44 4.04 -65.10 -0.26 -3.70 16 24 C 0.09 0.47 11.29 59.85 0.68 1.15 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.41 3.99 8.36 -40.82 -0.34 3.65 16 29 H 0.40 4.57 8.49 -40.82 -0.35 4.23 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.22 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 40 H 0.10 0.42 6.97 -51.93 -0.36 0.05 16 LS Contribution 344.66 15.07 5.19 5.19 Total: -1.00 -34.73 344.66 -8.56 -43.30 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.99 Total: 2.25 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -2.88 Total: 1.09 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.05 Total: -57.71 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.73 -8.56 -43.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116751952.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.092 kcal (2) G-P(sol) polarization free energy of solvation -34.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds