Wall clock time and date at job start Tue Mar 31 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47229 * 2 1 4 4 N 1.46500 * 109.47098 * 240.00287 * 2 1 3 5 5 C 1.34773 * 120.00431 * 85.00044 * 4 2 1 6 6 O 1.21593 * 119.99894 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00097 * 179.72742 * 5 4 2 8 8 C 1.46504 * 119.99854 * 180.27545 * 7 5 4 9 9 C 1.53004 * 109.46928 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.46988 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46983 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99624 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99634 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00657 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99703 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47214 * 90.00059 * 15 13 11 17 17 H 1.48501 * 109.47474 * 210.00166 * 15 13 11 18 18 H 1.48500 * 109.47089 * 330.00544 * 15 13 11 19 19 C 1.50698 * 109.47387 * 119.99899 * 2 1 3 20 20 N 1.30829 * 125.96238 * 74.68639 * 19 2 1 21 21 C 1.33240 * 109.83028 * 179.86997 * 20 19 2 22 22 N 1.30707 * 108.94550 * 0.40146 * 21 20 19 23 23 N 1.34433 * 125.96224 * 255.00584 * 19 2 1 24 24 C 1.46497 * 126.82143 * 0.02562 * 23 19 2 25 25 H 1.08994 * 109.47099 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47061 * 300.00108 * 1 2 3 27 27 H 1.09004 * 109.47132 * 59.99646 * 1 2 3 28 28 H 0.97000 * 119.99456 * 264.99607 * 4 2 1 29 29 H 0.97000 * 119.99736 * 0.26819 * 7 5 4 30 30 H 1.08998 * 109.46968 * 299.99782 * 8 7 5 31 31 H 1.08997 * 109.47198 * 59.99605 * 8 7 5 32 32 H 1.09007 * 109.46621 * 299.99773 * 9 8 7 33 33 H 1.08997 * 109.46991 * 59.99522 * 9 8 7 34 34 H 1.08998 * 109.46983 * 299.99930 * 10 9 8 35 35 H 1.08997 * 109.47123 * 59.99717 * 10 9 8 36 36 H 0.96990 * 120.00229 * 180.02562 * 14 13 11 37 37 H 1.07999 * 125.52247 * 180.13344 * 21 20 19 38 38 H 1.08998 * 109.47200 * 90.00632 * 24 23 19 39 39 H 1.09009 * 109.47064 * 210.00624 * 24 23 19 40 40 H 1.08999 * 109.47565 * 330.00267 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8574 1.1614 -2.4119 7 7 2.6015 -0.6522 -3.4562 8 6 2.7472 0.0801 -4.7167 9 6 3.2773 -0.8647 -5.7971 10 6 3.4289 -0.1000 -7.1136 11 6 3.9517 -1.0304 -8.1776 12 1 4.1558 -2.0636 -7.9385 13 6 4.1693 -0.5625 -9.4561 14 7 3.9211 0.6958 -9.7471 15 14 4.8166 -1.7160 -10.7752 16 1 3.6751 -2.3610 -11.4725 17 1 5.6231 -0.9447 -11.7550 18 1 5.6662 -2.7594 -10.1469 19 6 2.0324 -0.7104 1.2304 20 7 2.0248 -2.0037 1.4278 21 6 2.5463 -2.2817 2.6220 22 7 2.8865 -1.1635 3.2072 23 7 2.5610 -0.1253 2.3193 24 6 2.7572 1.3100 2.5367 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.2490 -1.6317 -1.1526 29 1 2.8322 -1.5934 -3.4126 30 1 1.7779 0.4743 -5.0219 31 1 3.4475 0.9040 -4.5794 32 1 4.2468 -1.2584 -5.4915 33 1 2.5773 -1.6888 -5.9344 34 1 2.4593 0.2934 -7.4189 35 1 4.1286 0.7244 -6.9765 36 1 4.0739 1.0248 -10.6466 37 1 2.6643 -3.2703 3.0405 38 1 1.8702 1.7304 3.0105 39 1 3.6219 1.4648 3.1823 40 1 2.9259 1.8029 1.5793 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116751952.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:15 Heat of formation + Delta-G solvation = 22.720012 kcal Electronic energy + Delta-G solvation = -21158.077615 eV Core-core repulsion = 17815.573938 eV Total energy + Delta-G solvation = -3342.503677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.26532 -41.08628 -37.47345 -36.46334 -35.19096 -35.07648 -33.37120 -32.27949 -30.79558 -28.39163 -28.25852 -25.54308 -24.57928 -23.16234 -22.26845 -21.89312 -21.19665 -19.52385 -18.54013 -17.87933 -17.50662 -17.08328 -16.76211 -16.49981 -15.95953 -15.80121 -15.50694 -15.27598 -14.64810 -14.40035 -14.24047 -14.11314 -13.91237 -13.71286 -13.46506 -13.23523 -12.83809 -12.73148 -12.52313 -12.41367 -12.34409 -11.64735 -11.63805 -11.30854 -11.16236 -11.13758 -10.84358 -10.69112 -10.53181 -10.45170 -9.85972 -8.17687 -6.28737 0.41064 1.16999 1.43089 1.44175 1.55043 1.66490 1.90860 2.11079 2.43465 2.82759 3.16178 3.24582 3.55814 3.67117 4.04240 4.04598 4.20161 4.27986 4.32888 4.44737 4.60074 4.61121 4.63573 4.78760 5.00143 5.02002 5.16441 5.16665 5.20369 5.35109 5.40006 5.48522 5.56481 5.66204 5.74849 5.87147 5.94605 6.25361 6.88655 6.96869 7.04316 7.40701 7.52386 8.94405 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.036189 B = 0.002480 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.534871 B =11286.148896 C =11598.578513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.248 3.752 3 H 0.109 0.891 4 N -0.725 5.725 5 C 0.706 3.294 6 O -0.629 6.629 7 N -0.729 5.729 8 C 0.151 3.849 9 C -0.102 4.102 10 C 0.024 3.976 11 C -0.540 4.540 12 H 0.065 0.935 13 C -0.003 4.003 14 N -0.935 5.935 15 Si 0.966 3.034 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.261 1.261 19 C 0.266 3.734 20 N -0.551 5.551 21 C 0.197 3.803 22 N -0.341 5.341 23 N -0.372 5.372 24 C 0.079 3.921 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.413 0.587 29 H 0.411 0.589 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.067 0.933 34 H -0.006 1.006 35 H -0.007 1.007 36 H 0.263 0.737 37 H 0.249 0.751 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 -3.744 26.715 27.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.140 3.860 3 H 0.127 0.873 4 N -0.383 5.383 5 C 0.406 3.594 6 O -0.510 6.510 7 N -0.384 5.384 8 C 0.026 3.974 9 C -0.140 4.140 10 C -0.014 4.014 11 C -0.578 4.578 12 H 0.084 0.916 13 C -0.201 4.201 14 N -0.575 5.575 15 Si 0.790 3.210 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.185 1.185 19 C -0.012 4.012 20 N -0.280 5.280 21 C -0.106 4.106 22 N -0.169 5.169 23 N -0.163 5.163 24 C -0.062 4.062 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.250 0.750 29 H 0.247 0.753 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.012 0.988 35 H 0.012 0.988 36 H 0.072 0.928 37 H 0.265 0.735 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.458 -2.644 27.054 27.547 hybrid contribution 0.528 -0.820 -0.935 1.352 sum -3.930 -3.465 26.119 26.639 Atomic orbital electron populations 1.22111 0.91742 1.03604 1.03545 1.19059 0.95384 0.94850 0.76739 0.87322 1.44863 1.71639 1.14465 1.07316 1.15953 0.78126 0.84593 0.80766 1.90900 1.58909 1.15946 1.85213 1.45049 1.69999 1.14604 1.08794 1.21101 1.00122 0.94550 0.81621 1.21598 1.00830 0.97951 0.93610 1.18938 0.95196 0.95077 0.92173 1.21690 1.43424 0.97199 0.95513 0.91635 1.26002 0.95927 0.96720 1.01420 1.70104 1.50108 1.16223 1.21087 0.85438 0.78492 0.78677 0.78373 1.19835 1.21067 1.18522 1.24275 0.95564 0.89748 0.91613 1.70387 1.25303 1.12615 1.19689 1.26649 0.95106 0.99557 0.89243 1.78047 1.25749 0.96168 1.16941 1.50494 1.44626 1.09164 1.12013 1.22419 1.05678 0.72479 1.05605 0.91281 0.89774 0.91453 0.74982 0.75285 0.93075 0.93204 0.91547 0.91412 0.98785 0.98840 0.92826 0.73548 0.87806 0.87774 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.47 71.98 0.68 -1.78 16 2 C 0.25 4.49 2.95 44.24 0.13 4.62 16 3 H 0.11 1.96 6.24 -2.38 -0.01 1.95 16 4 N -0.73 -15.03 5.07 -461.41 -2.34 -17.37 16 5 C 0.71 19.80 8.53 179.06 1.53 21.33 16 6 O -0.63 -22.37 16.01 -4.01 -0.06 -22.44 16 7 N -0.73 -19.74 5.56 -478.52 -2.66 -22.40 16 8 C 0.15 5.19 5.67 86.38 0.49 5.68 16 9 C -0.10 -3.86 5.27 30.60 0.16 -3.70 16 10 C 0.02 1.23 4.97 29.85 0.15 1.38 16 11 C -0.54 -29.99 9.11 25.60 0.23 -29.76 16 12 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 13 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 14 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 15 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 19 C 0.27 4.86 6.78 138.22 0.94 5.80 16 20 N -0.55 -10.79 10.89 -191.78 -2.09 -12.87 16 21 C 0.20 3.37 13.03 180.77 2.36 5.73 16 22 N -0.34 -6.64 12.70 -61.25 -0.78 -7.42 16 23 N -0.37 -6.32 4.04 -359.87 -1.45 -7.77 16 24 C 0.08 0.71 11.29 127.77 1.44 2.15 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.41 7.42 8.36 -92.71 -0.78 6.64 16 29 H 0.41 8.64 8.49 -92.71 -0.79 7.85 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 34 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 36 H 0.26 15.05 8.31 -92.72 -0.77 14.28 16 37 H 0.25 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.11 0.75 6.97 -2.39 -0.02 0.74 16 Total: -1.00 -74.65 344.66 0.99 -73.66 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -0.50 Total: 15.78 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 8.57 Total: 11.73 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -9.03 Total: -124.44 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.06 Total: -22.44 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -74.65 0.99 -73.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116751952.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.375 kcal (2) G-P(sol) polarization free energy of solvation -74.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds