Wall clock time and date at job start Tue Mar 31 2020 05:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46800 * 2 1 4 4 C 1.52996 * 109.46896 * 240.00069 * 2 1 3 5 5 C 1.50695 * 109.47381 * 60.00233 * 4 2 1 6 6 H 1.07998 * 120.00167 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00453 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99589 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00712 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47021 * 59.99514 * 9 7 5 11 11 H 1.48496 * 109.47490 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46959 * 300.00409 * 9 7 5 13 13 C 1.53005 * 109.46851 * 119.99823 * 2 1 3 14 14 N 1.46496 * 109.47059 * 300.00042 * 13 2 1 15 15 C 1.34774 * 119.99544 * 180.02562 * 14 13 2 16 16 O 1.21279 * 120.00472 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00020 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47238 * 180.02562 * 17 15 14 19 19 N 1.46496 * 109.47294 * 179.97438 * 18 17 15 20 20 C 1.34598 * 126.44096 * 124.99297 * 19 18 17 21 21 N 1.31070 * 106.67860 * 180.02562 * 20 19 18 22 22 N 1.28842 * 107.99645 * 0.02562 * 21 20 19 23 23 N 1.28744 * 109.39215 * 359.73360 * 22 21 20 24 24 H 1.09002 * 109.47288 * 299.99838 * 1 2 3 25 25 H 1.09004 * 109.46943 * 60.00383 * 1 2 3 26 26 H 1.09001 * 109.46630 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46930 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47312 * 300.00000 * 3 2 1 29 29 H 1.09002 * 109.47067 * 60.00027 * 3 2 1 30 30 H 1.09004 * 109.46785 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47364 * 299.99408 * 4 2 1 32 32 H 0.96997 * 119.99752 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.46524 * 180.02562 * 13 2 1 34 34 H 1.08992 * 109.46876 * 60.00481 * 13 2 1 35 35 H 0.96994 * 120.00700 * 0.02562 * 14 13 2 36 36 H 1.09001 * 109.46953 * 299.99667 * 17 15 14 37 37 H 1.09000 * 109.47318 * 59.99264 * 17 15 14 38 38 H 1.09001 * 109.46832 * 299.99686 * 18 17 15 39 39 H 1.09004 * 109.47261 * 59.99705 * 18 17 15 40 40 H 1.07999 * 126.66161 * 0.04829 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4797 6 1 0.9166 0.8670 -2.3806 7 6 1.8712 -0.4815 -3.7320 8 7 2.6281 -1.5503 -3.8526 9 14 1.2481 0.3986 -5.2572 10 1 1.7420 1.7991 -5.2571 11 1 1.7431 -0.3014 -6.4697 12 1 -0.2370 0.3976 -5.2572 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0306 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5757 -1.4763 3.7808 17 6 1.3748 0.2193 4.9000 18 6 1.8860 -0.5012 6.1492 19 7 1.3977 0.1894 7.3454 20 6 0.7005 -0.3600 8.3572 21 7 0.4652 0.6007 9.2172 22 7 0.9899 1.6839 8.7574 23 7 1.5588 1.4378 7.6289 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0277 0.0005 27 1 3.1301 1.4426 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1301 -0.7208 -1.2494 31 1 1.6768 -1.7489 -1.2492 32 1 2.8630 -1.8812 -4.7336 33 1 3.1300 -0.7208 1.2495 34 1 1.6768 -1.7488 1.2493 35 1 0.9937 0.7578 2.3565 36 1 1.7375 1.2472 4.9000 37 1 0.2849 0.2186 4.9000 38 1 1.5237 -1.5292 6.1495 39 1 2.9760 -0.5000 6.1489 40 1 0.3948 -1.3922 8.4438 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119570233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:58 Heat of formation + Delta-G solvation = 61.358632 kcal Electronic energy + Delta-G solvation = -21426.386719 eV Core-core repulsion = 18085.558538 eV Total energy + Delta-G solvation = -3340.828181 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.49545 -40.00795 -37.44182 -36.30419 -33.82389 -32.85243 -32.30023 -31.69176 -27.43735 -26.90507 -26.62400 -25.42482 -24.15009 -23.18766 -22.40954 -20.45123 -18.63293 -18.15040 -17.40901 -16.73093 -16.44675 -16.13170 -16.01533 -15.60814 -14.61192 -14.58450 -13.92171 -13.70864 -13.50505 -13.19094 -12.99222 -12.86757 -12.50632 -12.28024 -12.12630 -11.93353 -11.50164 -11.27131 -11.22529 -11.08229 -10.94025 -10.71939 -10.68374 -10.51891 -10.35267 -10.12912 -9.98526 -9.28178 -9.02519 -8.97357 -8.42333 -6.06582 -4.08327 0.90302 1.56660 1.92954 2.45713 3.14302 3.27325 3.33212 3.34374 3.79381 3.89378 4.09560 4.39296 4.41739 4.52738 4.77874 4.92973 5.09580 5.17752 5.28779 5.35953 5.38901 5.49299 5.62514 5.77025 6.03993 6.08651 6.12868 6.25758 6.36366 6.52551 6.60438 6.94825 6.96984 7.01313 7.44449 7.55136 7.66595 7.91278 8.08717 8.26846 8.32829 8.96091 9.55223 11.04765 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.049582 B = 0.002609 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.580497 B =10727.719744 C =10991.270890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.127 3.873 14 N -0.715 5.715 15 C 0.515 3.485 16 O -0.547 6.547 17 C -0.159 4.159 18 C 0.131 3.869 19 N -0.308 5.308 20 C 0.161 3.839 21 N -0.310 5.310 22 N -0.078 5.078 23 N -0.092 5.092 24 H 0.028 0.972 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.028 0.972 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.261 0.739 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.401 0.599 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 1.469 18.410 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.004 3.996 14 N -0.366 5.366 15 C 0.299 3.701 16 O -0.425 6.425 17 C -0.200 4.200 18 C 0.010 3.990 19 N -0.110 5.110 20 C -0.137 4.137 21 N -0.158 5.158 22 N -0.072 5.072 23 N -0.078 5.078 24 H 0.047 0.953 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.237 0.763 36 H 0.130 0.870 37 H 0.121 0.879 38 H 0.143 0.857 39 H 0.135 0.865 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.358 1.965 18.807 19.205 hybrid contribution -0.568 -0.239 -1.521 1.641 sum -3.926 1.726 17.286 17.810 Atomic orbital electron populations 1.21773 0.95228 1.01179 1.00310 1.20921 0.95492 0.95908 0.95003 1.21775 1.00611 0.95812 1.00332 1.19087 0.96387 0.95208 0.89435 1.21124 1.31379 1.12160 0.90501 0.92313 1.25012 0.95262 0.95065 0.99119 1.69949 1.36746 1.23001 1.23643 0.86701 0.79148 0.79780 0.82614 1.20295 1.21363 1.20317 1.21703 0.99100 0.96059 0.82694 1.46194 1.52669 1.31898 1.05816 1.20026 0.80846 0.84644 0.84549 1.90743 1.38360 1.26521 1.86892 1.21912 1.03695 1.02346 0.92005 1.22029 1.02525 0.95967 0.78524 1.48860 1.36188 1.07363 1.18560 1.27794 0.96928 1.03230 0.85763 1.75014 1.19896 0.96278 1.24650 1.78667 1.08384 1.18267 1.01898 1.78895 1.19118 0.96953 1.12847 0.95315 0.91310 0.93329 0.93288 0.91317 0.95263 0.96309 0.96331 0.92922 0.91526 0.91548 0.76344 0.86960 0.87904 0.85745 0.86514 0.74845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.05 37.16 0.30 -1.75 16 2 C -0.07 -1.26 0.54 -154.50 -0.08 -1.35 16 3 C -0.13 -2.07 8.05 37.16 0.30 -1.77 16 4 C 0.04 0.84 4.04 -27.89 -0.11 0.73 16 5 C -0.51 -13.12 7.65 -34.44 -0.26 -13.39 16 6 H 0.06 1.44 5.68 -52.49 -0.30 1.14 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 9 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.13 1.97 4.56 -4.04 -0.02 1.95 16 14 N -0.71 -8.38 4.96 -60.30 -0.30 -8.67 16 15 C 0.52 5.62 7.83 -10.98 -0.09 5.53 16 16 O -0.55 -7.88 15.98 5.56 0.09 -7.79 16 17 C -0.16 -1.09 5.84 -27.88 -0.16 -1.25 16 18 C 0.13 0.78 5.77 -4.05 -0.02 0.76 16 19 N -0.31 -2.36 3.44 -62.56 -0.22 -2.58 16 20 C 0.16 1.10 12.79 -90.39 -1.16 -0.06 16 21 N -0.31 -3.37 12.36 29.59 0.37 -3.00 16 22 N -0.08 -0.98 13.43 60.35 0.81 -0.17 16 23 N -0.09 -1.00 13.08 60.35 0.79 -0.21 16 24 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 25 H 0.07 1.22 6.62 -51.93 -0.34 0.87 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 29 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.40 3.92 6.16 -40.82 -0.25 3.67 16 36 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.12 0.49 8.04 -51.93 -0.42 0.08 16 39 H 0.12 0.74 8.10 -51.93 -0.42 0.32 16 40 H 0.24 0.36 8.06 -52.49 -0.42 -0.07 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -32.80 334.41 -4.84 -37.63 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.73 Total: -1.76 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -1.41 Total: -9.15 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 2.19 Total: -39.62 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.09 Total: -7.79 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.80 -4.84 -37.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119570233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.994 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds