Wall clock time and date at job start Tue Mar 31 2020 05:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99729 * 2 1 4 4 C 1.53009 * 109.47032 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47085 * 185.21455 * 4 3 2 6 6 N 1.40593 * 127.38290 * 276.72839 * 5 4 3 7 7 N 1.28909 * 106.81565 * 180.02562 * 6 5 4 8 8 N 1.28419 * 110.31867 * 0.02562 * 7 6 5 9 9 C 1.31481 * 110.50779 * 359.97438 * 8 7 6 10 10 N 1.38379 * 126.43997 * 180.02562 * 9 8 7 11 11 C 1.46902 * 110.99770 * 107.23401 * 10 9 8 12 12 C 1.50697 * 109.47079 * 304.91399 * 11 10 9 13 13 H 1.08001 * 120.00243 * 4.67452 * 12 11 10 14 14 C 1.37882 * 119.99929 * 184.67660 * 12 11 10 15 15 N 1.31511 * 119.99852 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00108 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46842 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47138 * 119.99655 * 16 14 12 19 19 H 1.48496 * 109.46929 * 240.00006 * 16 14 12 20 20 C 1.46901 * 110.99836 * 343.28236 * 10 9 8 21 21 C 1.53000 * 109.47036 * 195.71128 * 20 10 9 22 22 C 1.53000 * 117.50056 * 245.25507 * 21 20 10 23 23 C 1.52998 * 117.50057 * 176.59186 * 21 20 10 24 24 H 1.08996 * 109.47469 * 59.99497 * 1 2 3 25 25 H 1.08996 * 109.46847 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46464 * 299.99497 * 1 2 3 27 27 H 1.08998 * 109.47131 * 60.00617 * 3 2 1 28 28 H 1.09002 * 109.47094 * 300.00277 * 3 2 1 29 29 H 1.09003 * 109.46849 * 65.21593 * 4 3 2 30 30 H 1.09000 * 109.46926 * 305.21871 * 4 3 2 31 31 H 1.09000 * 109.47049 * 64.91318 * 11 10 9 32 32 H 1.09001 * 109.46636 * 184.91611 * 11 10 9 33 33 H 0.97003 * 119.99917 * 180.02562 * 15 14 12 34 34 H 1.08998 * 109.47560 * 315.71233 * 20 10 9 35 35 H 1.09001 * 109.47492 * 75.71223 * 20 10 9 36 36 H 1.08999 * 115.55022 * 30.92488 * 21 20 10 37 37 H 1.08999 * 117.49817 * 0.02562 * 22 21 20 38 38 H 1.09004 * 117.49930 * 145.02147 * 22 21 20 39 39 H 1.08995 * 117.50427 * 214.98223 * 23 21 20 40 40 H 1.09004 * 117.49935 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 4.1309 2.5173 0.1249 6 7 4.3657 3.4476 -0.9028 7 7 4.9022 4.4829 -0.3532 8 7 5.0296 4.3007 0.9116 9 6 4.5735 3.1162 1.2546 10 7 4.5503 2.5824 2.5311 11 6 3.1820 2.5540 3.0649 12 6 2.5906 3.9388 3.0053 13 1 3.1434 4.7426 2.5419 14 6 1.3438 4.1797 3.5426 15 7 0.6705 3.2008 4.1066 16 14 0.6104 5.8961 3.4682 17 1 1.5609 6.8113 2.7868 18 1 -0.6671 5.8562 2.7123 19 1 0.3549 6.3854 4.8467 20 6 5.4497 3.3215 3.4271 21 6 5.7032 2.4956 4.6899 22 6 5.1827 3.0541 6.0158 23 6 6.6844 3.0610 5.7187 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8465 -0.8900 29 1 3.8633 0.7268 -0.9339 30 1 3.8512 0.5651 0.8387 31 1 2.5737 1.8732 2.4693 32 1 3.2028 2.2120 4.0997 33 1 -0.2068 3.3702 4.4842 34 1 6.3958 3.5083 2.9192 35 1 4.9903 4.2714 3.7005 36 1 5.6818 1.4140 4.5564 37 1 4.6592 4.0098 5.9884 38 1 4.8192 2.3400 6.7547 39 1 7.3081 2.3515 6.2623 40 1 7.1489 4.0216 5.4962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119647558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:48 Heat of formation + Delta-G solvation = 107.749998 kcal Electronic energy + Delta-G solvation = -23234.834977 eV Core-core repulsion = 19896.018476 eV Total energy + Delta-G solvation = -3338.816500 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.30841 -38.15939 -37.81750 -35.90375 -34.58824 -32.80554 -30.60208 -29.80459 -27.74482 -26.37818 -25.64179 -23.98521 -22.93958 -22.01861 -21.88240 -20.63339 -19.64294 -17.33992 -16.66994 -16.32258 -16.09031 -15.84669 -15.47339 -15.22938 -14.59543 -14.56719 -14.02722 -13.67442 -13.37823 -12.87900 -12.66753 -12.26192 -12.15839 -11.81365 -11.50397 -11.33242 -11.22191 -11.14123 -11.12022 -10.90173 -10.74769 -10.48661 -10.27056 -10.06407 -9.97515 -9.84911 -9.59151 -9.49756 -9.41994 -8.68019 -7.99626 -6.30779 -4.39078 1.64610 2.24023 3.00624 3.14765 3.24163 3.32807 3.84049 4.14376 4.24416 4.40478 4.74340 5.04068 5.08547 5.15042 5.21857 5.32449 5.39815 5.42427 5.47611 5.56864 5.62871 5.77529 5.80689 5.88308 5.94672 5.97433 6.15638 6.16150 6.28204 6.35185 6.53330 6.54212 6.71654 6.86758 7.11191 7.20280 7.30675 7.63134 7.70282 7.89128 8.69846 9.17415 9.30203 10.75610 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.010500 B = 0.008070 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.138182 B = 3468.851866 C = 4316.768133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.389 6.389 3 C 0.040 3.960 4 C 0.139 3.861 5 N -0.385 5.385 6 N -0.109 5.109 7 N -0.039 5.039 8 N -0.367 5.367 9 C 0.473 3.527 10 N -0.465 5.465 11 C 0.187 3.813 12 C -0.562 4.562 13 H 0.069 0.931 14 C 0.075 3.925 15 N -0.883 5.883 16 Si 0.887 3.113 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.280 1.280 20 C 0.103 3.897 21 C -0.138 4.138 22 C -0.169 4.169 23 C -0.184 4.184 24 H 0.038 0.962 25 H 0.085 0.915 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.038 0.962 32 H 0.064 0.936 33 H 0.265 0.735 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.974 -6.182 -1.613 7.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.307 6.307 3 C -0.037 4.037 4 C 0.016 3.984 5 N -0.184 5.184 6 N -0.097 5.097 7 N -0.035 5.035 8 N -0.226 5.226 9 C 0.108 3.892 10 N -0.190 5.190 11 C 0.065 3.935 12 C -0.600 4.600 13 H 0.087 0.913 14 C -0.129 4.129 15 N -0.521 5.521 16 Si 0.714 3.286 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.205 1.205 20 C -0.024 4.024 21 C -0.157 4.157 22 C -0.206 4.206 23 C -0.221 4.221 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.121 0.879 30 H 0.132 0.868 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.339 -5.921 -2.442 7.736 hybrid contribution -1.494 0.954 0.559 1.859 sum 2.844 -4.966 -1.884 6.025 Atomic orbital electron populations 1.22743 0.80232 1.02531 1.00631 1.87709 1.20387 1.26941 1.95683 1.22933 0.92309 0.85543 1.02962 1.21456 0.92543 0.78596 1.05800 1.50975 1.46406 1.15756 1.05299 1.82385 1.21264 0.95961 1.10075 1.77732 1.08506 1.15870 1.01425 1.74928 1.28960 1.12793 1.05898 1.23162 0.90119 0.86469 0.89471 1.59412 1.14841 1.48188 0.96549 1.20223 0.78374 0.97657 0.97293 1.21804 1.03057 0.95469 1.39703 0.91259 1.24855 0.96716 0.97096 0.94271 1.69933 1.13239 1.31492 1.37412 0.86583 0.79243 0.84655 0.78099 1.19352 1.20876 1.20543 1.21556 0.94841 0.95555 0.90459 1.22121 1.03850 0.99732 0.90014 1.23011 0.95362 1.03343 0.98928 1.22948 0.93029 1.02561 1.03587 0.94291 0.89603 0.93099 0.89976 0.92708 0.87949 0.86762 0.94395 0.91843 0.92539 0.90998 0.90866 0.87538 0.88308 0.89259 0.89257 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 11.01 101.05 1.11 1.57 16 2 O -0.39 -6.04 10.70 -35.23 -0.38 -6.42 16 3 C 0.04 0.67 6.04 37.16 0.22 0.89 16 4 C 0.14 2.18 6.35 -4.04 -0.03 2.16 16 5 N -0.38 -7.34 3.69 -61.86 -0.23 -7.56 16 6 N -0.11 -2.22 13.93 60.35 0.84 -1.38 16 7 N -0.04 -0.85 13.38 60.35 0.81 -0.04 16 8 N -0.37 -8.11 10.75 30.10 0.32 -7.79 16 9 C 0.47 9.78 5.67 -320.41 -1.82 7.97 16 10 N -0.47 -9.16 4.63 -176.22 -0.82 -9.98 16 11 C 0.19 4.20 4.99 -4.98 -0.02 4.18 16 12 C -0.56 -14.20 7.54 -34.44 -0.26 -14.46 16 13 H 0.07 1.87 6.45 -52.49 -0.34 1.53 16 14 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 15 N -0.88 -23.40 13.29 55.43 0.74 -22.67 16 16 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.10 1.88 4.62 -3.82 -0.02 1.86 16 21 C -0.14 -2.17 4.99 -90.62 -0.45 -2.62 16 22 C -0.17 -2.59 10.14 -26.69 -0.27 -2.86 16 23 C -0.18 -2.42 10.25 -26.69 -0.27 -2.69 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.64 6.14 -51.93 -0.32 1.32 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.11 1.72 8.07 -51.93 -0.42 1.30 16 31 H 0.04 0.88 5.26 -51.93 -0.27 0.61 16 32 H 0.06 1.50 7.24 -51.93 -0.38 1.12 16 33 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.07 1.26 7.80 -51.93 -0.40 0.86 16 35 H 0.07 1.50 6.67 -51.93 -0.35 1.16 16 36 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.10 1.66 8.04 -51.93 -0.42 1.25 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 335.53 15.07 5.06 5.06 Total: -1.00 -27.98 335.53 -6.41 -34.40 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.83 Total: 2.75 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.90 Total: -2.16 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 1.66 Total: -49.42 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.38 Total: -6.42 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.98 -6.41 -34.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119647558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.147 kcal (2) G-P(sol) polarization free energy of solvation -27.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds