Wall clock time and date at job start Tue Mar 31 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42908 * 109.46991 * 2 1 4 4 C 1.42899 * 113.99586 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47119 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47535 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47169 * 179.97438 * 6 5 4 8 8 N 1.40586 * 127.39123 * 268.34146 * 7 6 5 9 9 N 1.28906 * 106.84312 * 179.97438 * 8 7 6 10 10 N 1.28426 * 110.34986 * 359.74733 * 9 8 7 11 11 C 1.31567 * 110.49664 * 0.42368 * 10 9 8 12 12 N 1.38221 * 126.45669 * 179.85123 * 11 10 9 13 13 C 1.36928 * 120.00115 * 179.84550 * 12 11 10 14 14 H 1.07997 * 120.00160 * 305.69504 * 13 12 11 15 15 C 1.38802 * 119.99748 * 125.97445 * 13 12 11 16 16 N 1.31565 * 119.99978 * 348.94314 * 15 13 12 17 17 Si 1.86804 * 120.00189 * 168.94703 * 15 13 12 18 18 H 1.48502 * 109.46856 * 59.99697 * 17 15 13 19 19 H 1.48495 * 109.47131 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46812 * 300.00081 * 17 15 13 21 21 C 1.46505 * 119.99896 * 359.85242 * 12 11 10 22 22 C 1.52998 * 117.49989 * 182.15470 * 21 12 11 23 23 C 1.52996 * 117.49891 * 113.53189 * 21 12 11 24 24 H 1.09005 * 109.47008 * 300.00461 * 1 2 3 25 25 H 1.09003 * 109.47140 * 60.00008 * 1 2 3 26 26 H 1.08996 * 109.47303 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47154 * 239.99992 * 2 1 3 28 28 H 1.08999 * 109.47258 * 119.99488 * 2 1 3 29 29 H 1.09003 * 109.47201 * 60.00194 * 4 3 2 30 30 H 1.08996 * 109.47450 * 299.99515 * 4 3 2 31 31 H 1.09000 * 109.47421 * 59.99799 * 5 4 3 32 32 H 1.09008 * 109.47109 * 299.99978 * 5 4 3 33 33 H 1.08995 * 109.47227 * 59.99877 * 6 5 4 34 34 H 1.08999 * 109.46972 * 300.00271 * 6 5 4 35 35 H 0.96997 * 120.00115 * 185.02158 * 16 15 13 36 36 H 1.08998 * 115.54946 * 327.86306 * 21 12 11 37 37 H 1.09005 * 117.49841 * 359.97438 * 22 21 12 38 38 H 1.08997 * 117.49975 * 145.01563 * 22 21 12 39 39 H 1.09007 * 117.50227 * 214.97698 * 23 21 12 40 40 H 1.09003 * 117.50394 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 -0.0012 6 6 5.3506 3.0592 -0.0024 7 7 5.7283 4.4746 -0.0036 8 7 5.9788 5.2905 -1.1208 9 7 6.2772 6.4605 -0.6696 10 7 6.2357 6.4680 0.6140 11 6 5.9106 5.2781 1.0714 12 7 5.7747 4.9173 2.3988 13 6 5.4261 3.6346 2.7275 14 1 4.5363 3.1918 2.3051 15 6 6.2133 2.9055 3.6080 16 7 7.3994 3.3554 3.9571 17 14 5.5888 1.2855 4.2973 18 1 5.3286 0.3404 3.1818 19 1 6.6107 0.7078 5.2068 20 1 4.3309 1.5203 5.0508 21 6 6.0036 5.9075 3.4541 22 6 5.8871 5.4341 4.9043 23 6 4.8010 6.3275 4.3016 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.8333 0.9767 -0.8908 30 1 3.8340 0.9765 0.8891 31 1 3.4230 3.4222 0.8888 32 1 3.4223 3.4217 -0.8912 33 1 5.7527 2.5755 -0.8926 34 1 5.7541 2.5758 0.8873 35 1 7.9793 2.8127 4.5139 36 1 6.7522 6.6677 3.2311 37 1 5.6397 4.3860 5.0733 38 1 6.5593 5.8827 5.6357 39 1 4.7587 7.3639 4.6366 40 1 3.8394 5.8675 4.0738 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119647797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:10 Heat of formation + Delta-G solvation = 107.067558 kcal Electronic energy + Delta-G solvation = -22968.914186 eV Core-core repulsion = 19630.068093 eV Total energy + Delta-G solvation = -3338.846093 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.50551 -38.13320 -37.68713 -35.26448 -33.28790 -32.44182 -31.88931 -30.34329 -29.41448 -26.15999 -24.87216 -22.83762 -22.24497 -22.10264 -21.35683 -20.82659 -19.85293 -17.67925 -16.83780 -16.41492 -16.17670 -15.75253 -15.26648 -14.97967 -14.44238 -14.19014 -13.97057 -13.76660 -13.01625 -12.79154 -12.41296 -12.13408 -12.08684 -12.03147 -11.74748 -11.53048 -11.41757 -11.31495 -11.11332 -10.88870 -10.62922 -10.55192 -10.46016 -10.02348 -9.67771 -9.54427 -9.47470 -9.34955 -9.17910 -8.85945 -7.04764 -6.59150 -4.51740 2.40864 2.84789 2.90121 3.00065 3.01579 3.64033 3.76676 3.82111 4.49388 4.55823 4.94844 4.99045 5.06087 5.09986 5.25773 5.36956 5.40488 5.42365 5.53426 5.74305 5.78973 5.82156 5.87622 5.94336 6.00245 6.02097 6.09354 6.23590 6.39576 6.43503 6.58353 6.77834 6.82701 6.92393 7.10521 7.18770 7.24447 7.37508 7.92666 8.31786 8.83058 9.23743 9.92650 10.36622 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.012422 B = 0.007196 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.470926 B = 3890.230083 C = 5248.158231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.389 6.389 4 C 0.069 3.931 5 C -0.133 4.133 6 C 0.138 3.862 7 N -0.421 5.421 8 N -0.150 5.150 9 N -0.039 5.039 10 N -0.416 5.416 11 C 0.499 3.501 12 N -0.380 5.380 13 C -0.358 4.358 14 H 0.092 0.908 15 C 0.060 3.940 16 N -0.837 5.837 17 Si 0.907 3.093 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.266 1.266 21 C 0.127 3.873 22 C -0.141 4.141 23 C -0.216 4.216 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.275 0.725 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.163 -7.744 -0.667 10.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.308 6.308 4 C -0.009 4.009 5 C -0.172 4.172 6 C 0.015 3.985 7 N -0.225 5.225 8 N -0.139 5.139 9 N -0.035 5.035 10 N -0.285 5.285 11 C 0.138 3.862 12 N -0.086 5.086 13 C -0.486 4.486 14 H 0.109 0.891 15 C -0.151 4.151 16 N -0.468 5.468 17 Si 0.732 3.268 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.191 1.191 21 C 0.022 3.978 22 C -0.179 4.179 23 C -0.255 4.255 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.144 0.856 35 H 0.085 0.915 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.846 -6.769 -1.321 9.717 hybrid contribution -0.236 -2.017 0.957 2.245 sum -7.082 -8.786 -0.364 11.290 Atomic orbital electron populations 1.21739 0.93940 1.01979 1.03154 1.22439 0.95467 0.84153 0.99995 1.87884 1.21388 1.26079 1.95448 1.22352 0.80971 0.97080 1.00456 1.21950 0.95699 0.95364 1.04160 1.21763 0.94143 0.77176 1.05427 1.50503 1.57604 1.11092 1.03298 1.82155 1.27150 0.97607 1.07026 1.77508 1.08914 1.13291 1.03787 1.74677 1.33678 1.17672 1.02498 1.22214 0.91642 0.86195 0.86111 1.40625 1.63613 1.08814 0.95499 1.19318 1.09372 0.89090 1.30833 0.89116 1.25649 0.94455 0.98405 0.96596 1.70030 1.06780 1.37133 1.32862 0.86314 0.79257 0.81553 0.79711 1.19303 1.20334 1.19053 1.21147 0.97856 0.93010 0.85814 1.23057 0.99503 1.00535 0.94783 1.23427 0.95517 0.99228 1.07339 0.91809 0.91933 0.91304 0.93566 0.93418 0.93251 0.92617 0.89871 0.91093 0.90078 0.85580 0.91456 0.87336 0.87249 0.90289 0.89947 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.06 0.64 6.66 37.16 0.25 0.89 16 3 O -0.39 -5.78 10.34 -35.23 -0.36 -6.15 16 4 C 0.07 0.98 5.94 37.16 0.22 1.20 16 5 C -0.13 -2.22 5.35 -26.73 -0.14 -2.36 16 6 C 0.14 2.52 5.64 -4.05 -0.02 2.50 16 7 N -0.42 -9.36 3.69 -61.85 -0.23 -9.59 16 8 N -0.15 -3.48 13.93 60.35 0.84 -2.64 16 9 N -0.04 -0.95 13.38 60.35 0.81 -0.14 16 10 N -0.42 -10.37 11.77 30.11 0.35 -10.01 16 11 C 0.50 12.02 8.40 -320.35 -2.69 9.33 16 12 N -0.38 -8.86 2.80 -109.49 -0.31 -9.16 16 13 C -0.36 -8.00 5.84 -15.07 -0.09 -8.09 16 14 H 0.09 1.96 4.72 -52.49 -0.25 1.72 16 15 C 0.06 1.33 3.25 -17.46 -0.06 1.27 16 16 N -0.84 -19.78 11.49 55.49 0.64 -19.14 16 17 Si 0.91 17.11 29.56 -169.99 -5.02 12.08 16 18 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 19 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 21 C 0.13 2.79 5.79 -67.93 -0.39 2.39 16 22 C -0.14 -2.82 8.34 -26.73 -0.22 -3.05 16 23 C -0.22 -4.09 10.37 -26.73 -0.28 -4.36 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.56 6.57 -51.93 -0.34 1.21 16 32 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.13 2.42 5.58 -51.93 -0.29 2.13 16 35 H 0.27 6.21 8.32 -40.82 -0.34 5.87 16 36 H 0.11 2.43 8.05 -51.93 -0.42 2.01 16 37 H 0.11 2.37 5.27 -51.93 -0.27 2.09 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 330.36 15.07 4.98 4.98 Total: -1.00 -26.86 330.36 -7.13 -33.99 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.78 Total: 7.12 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -3.05 Total: -1.35 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 2.11 Total: -50.68 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.36 Total: -6.15 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.02 Total: 12.08 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.86 -7.13 -33.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119647797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.057 kcal (2) G-P(sol) polarization free energy of solvation -26.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds