Wall clock time and date at job start Tue Mar 31 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42908 * 109.46991 * 2 1 4 4 C 1.42899 * 113.99586 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47119 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47535 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47169 * 179.97438 * 6 5 4 8 8 N 1.40586 * 127.39123 * 268.34146 * 7 6 5 9 9 N 1.28906 * 106.84312 * 179.97438 * 8 7 6 10 10 N 1.28426 * 110.34986 * 359.74733 * 9 8 7 11 11 C 1.31567 * 110.49664 * 0.42368 * 10 9 8 12 12 N 1.38221 * 126.45669 * 179.85123 * 11 10 9 13 13 C 1.36928 * 120.00115 * 179.84550 * 12 11 10 14 14 H 1.07997 * 120.00160 * 305.69504 * 13 12 11 15 15 C 1.38802 * 119.99748 * 125.97445 * 13 12 11 16 16 N 1.31565 * 119.99978 * 348.94314 * 15 13 12 17 17 Si 1.86804 * 120.00189 * 168.94703 * 15 13 12 18 18 H 1.48502 * 109.46856 * 59.99697 * 17 15 13 19 19 H 1.48495 * 109.47131 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46812 * 300.00081 * 17 15 13 21 21 C 1.46505 * 119.99896 * 359.85242 * 12 11 10 22 22 C 1.52998 * 117.49989 * 182.15470 * 21 12 11 23 23 C 1.52996 * 117.49891 * 113.53189 * 21 12 11 24 24 H 1.09005 * 109.47008 * 300.00461 * 1 2 3 25 25 H 1.09003 * 109.47140 * 60.00008 * 1 2 3 26 26 H 1.08996 * 109.47303 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47154 * 239.99992 * 2 1 3 28 28 H 1.08999 * 109.47258 * 119.99488 * 2 1 3 29 29 H 1.09003 * 109.47201 * 60.00194 * 4 3 2 30 30 H 1.08996 * 109.47450 * 299.99515 * 4 3 2 31 31 H 1.09000 * 109.47421 * 59.99799 * 5 4 3 32 32 H 1.09008 * 109.47109 * 299.99978 * 5 4 3 33 33 H 1.08995 * 109.47227 * 59.99877 * 6 5 4 34 34 H 1.08999 * 109.46972 * 300.00271 * 6 5 4 35 35 H 0.96997 * 120.00115 * 185.02158 * 16 15 13 36 36 H 1.08998 * 115.54946 * 327.86306 * 21 12 11 37 37 H 1.09005 * 117.49841 * 359.97438 * 22 21 12 38 38 H 1.08997 * 117.49975 * 145.01563 * 22 21 12 39 39 H 1.09007 * 117.50227 * 214.97698 * 23 21 12 40 40 H 1.09003 * 117.50394 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 -0.0012 6 6 5.3506 3.0592 -0.0024 7 7 5.7283 4.4746 -0.0036 8 7 5.9788 5.2905 -1.1208 9 7 6.2772 6.4605 -0.6696 10 7 6.2357 6.4680 0.6140 11 6 5.9106 5.2781 1.0714 12 7 5.7747 4.9173 2.3988 13 6 5.4261 3.6346 2.7275 14 1 4.5363 3.1918 2.3051 15 6 6.2133 2.9055 3.6080 16 7 7.3994 3.3554 3.9571 17 14 5.5888 1.2855 4.2973 18 1 5.3286 0.3404 3.1818 19 1 6.6107 0.7078 5.2068 20 1 4.3309 1.5203 5.0508 21 6 6.0036 5.9075 3.4541 22 6 5.8871 5.4341 4.9043 23 6 4.8010 6.3275 4.3016 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.8333 0.9767 -0.8908 30 1 3.8340 0.9765 0.8891 31 1 3.4230 3.4222 0.8888 32 1 3.4223 3.4217 -0.8912 33 1 5.7527 2.5755 -0.8926 34 1 5.7541 2.5758 0.8873 35 1 7.9793 2.8127 4.5139 36 1 6.7522 6.6677 3.2311 37 1 5.6397 4.3860 5.0733 38 1 6.5593 5.8827 5.6357 39 1 4.7587 7.3639 4.6366 40 1 3.8394 5.8675 4.0738 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119647797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:09 Heat of formation + Delta-G solvation = 93.816138 kcal Electronic energy + Delta-G solvation = -22969.488811 eV Core-core repulsion = 19630.068093 eV Total energy + Delta-G solvation = -3339.420718 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.31578 -39.47252 -39.11429 -36.79528 -34.90994 -34.15803 -33.21124 -31.56310 -31.15525 -27.70917 -26.46825 -23.97301 -23.69122 -23.65044 -22.92820 -22.34282 -21.59945 -19.37058 -18.30259 -17.83515 -17.43442 -17.25616 -16.82511 -16.64125 -15.72072 -15.59156 -15.37811 -15.26821 -14.31912 -14.03488 -13.94815 -13.79046 -13.63280 -13.25055 -13.12819 -12.97592 -12.87339 -12.61801 -12.40105 -12.15007 -12.08446 -11.99173 -11.80707 -11.70651 -11.45744 -11.16006 -11.03595 -10.91994 -10.56708 -10.53476 -8.80330 -8.30301 -6.27877 0.59645 1.18826 1.41085 1.47560 1.53663 1.85924 2.19562 2.62571 2.86583 2.89533 3.35904 3.67424 3.99181 4.04638 4.09305 4.16288 4.21152 4.25893 4.36250 4.40787 4.43987 4.45297 4.50976 4.57187 4.73442 4.81497 4.86525 4.91829 5.03174 5.05449 5.07414 5.21274 5.26177 5.29596 5.41639 5.55757 5.68038 6.17926 6.27095 6.57812 7.09208 7.47890 8.09659 8.66497 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.012422 B = 0.007196 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.470926 B = 3890.230083 C = 5248.158231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.413 6.413 4 C 0.074 3.926 5 C -0.119 4.119 6 C 0.135 3.865 7 N -0.419 5.419 8 N -0.149 5.149 9 N -0.053 5.053 10 N -0.436 5.436 11 C 0.478 3.522 12 N -0.383 5.383 13 C -0.364 4.364 14 H 0.097 0.903 15 C 0.034 3.966 16 N -0.867 5.867 17 Si 0.961 3.039 18 H -0.251 1.251 19 H -0.282 1.282 20 H -0.265 1.265 21 C 0.096 3.904 22 C -0.132 4.132 23 C -0.190 4.190 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.275 0.725 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.200 -9.578 -0.401 12.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.334 6.334 4 C -0.003 4.003 5 C -0.158 4.158 6 C 0.013 3.987 7 N -0.224 5.224 8 N -0.139 5.139 9 N -0.049 5.049 10 N -0.306 5.306 11 C 0.118 3.882 12 N -0.089 5.089 13 C -0.492 4.492 14 H 0.114 0.886 15 C -0.175 4.175 16 N -0.499 5.499 17 Si 0.783 3.217 18 H -0.175 1.175 19 H -0.208 1.208 20 H -0.190 1.190 21 C -0.009 4.009 22 C -0.170 4.170 23 C -0.229 4.229 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.112 0.888 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.136 0.864 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.128 0.872 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.900 -8.613 -1.062 11.736 hybrid contribution 0.077 -1.460 0.872 1.703 sum -7.824 -10.073 -0.190 12.756 Atomic orbital electron populations 1.21771 0.92852 1.03472 1.02551 1.22715 0.96445 0.82687 1.01091 1.87851 1.21419 1.28434 1.95663 1.22272 0.81236 0.95048 1.01748 1.21762 0.94272 0.97243 1.02542 1.21991 0.95284 0.75217 1.06224 1.50722 1.57173 1.12068 1.02440 1.82036 1.26667 0.97536 1.07629 1.77460 1.09750 1.13878 1.03791 1.74581 1.34511 1.18747 1.02774 1.22453 0.92347 0.86487 0.86944 1.40906 1.63107 1.09470 0.95381 1.19573 1.09600 0.89132 1.30930 0.88571 1.26245 0.94148 1.00879 0.96181 1.70135 1.07914 1.38371 1.33527 0.85475 0.78422 0.78420 0.79386 1.17479 1.20755 1.18994 1.21273 0.99716 0.93494 0.86439 1.22990 1.00130 1.00069 0.93785 1.23433 0.94205 1.00481 1.04812 0.92704 0.92249 0.88769 0.91919 0.92794 0.90818 0.92370 0.92323 0.91759 0.87530 0.86377 0.91486 0.88632 0.88691 0.88840 0.87222 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 10.28 71.98 0.74 -1.80 16 2 C 0.05 0.94 6.66 71.98 0.48 1.42 16 3 O -0.41 -11.56 10.34 -148.98 -1.54 -13.10 16 4 C 0.07 1.95 5.94 71.98 0.43 2.38 16 5 C -0.12 -3.86 5.35 30.59 0.16 -3.70 16 6 C 0.13 4.76 5.64 86.38 0.49 5.25 16 7 N -0.42 -18.59 3.69 -349.60 -1.29 -19.88 16 8 N -0.15 -6.90 13.93 37.02 0.52 -6.39 16 9 N -0.05 -2.59 13.38 37.02 0.50 -2.10 16 10 N -0.44 -22.09 11.77 -58.67 -0.69 -22.78 16 11 C 0.48 23.28 8.40 260.63 2.19 25.47 16 12 N -0.38 -17.94 2.80 -500.32 -1.40 -19.34 16 13 C -0.36 -16.15 5.84 84.03 0.49 -15.66 16 14 H 0.10 4.11 4.72 -2.91 -0.01 4.10 16 15 C 0.03 1.47 3.25 84.87 0.28 1.75 16 16 N -0.87 -40.79 11.49 21.65 0.25 -40.54 16 17 Si 0.96 33.80 29.56 68.60 2.03 35.82 16 18 H -0.25 -8.09 7.11 99.48 0.71 -7.38 16 19 H -0.28 -10.08 7.11 99.48 0.71 -9.38 16 20 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 21 C 0.10 4.21 5.79 44.99 0.26 4.47 16 22 C -0.13 -5.17 8.34 30.59 0.26 -4.92 16 23 C -0.19 -6.97 10.37 30.59 0.32 -6.65 16 24 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 2.18 6.57 -2.39 -0.02 2.17 16 32 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 34 H 0.12 4.42 5.58 -2.39 -0.01 4.41 16 35 H 0.28 12.37 8.32 -92.71 -0.77 11.59 16 36 H 0.10 4.37 8.05 -2.39 -0.02 4.35 16 37 H 0.09 4.03 5.27 -2.38 -0.01 4.02 16 38 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 39 H 0.11 3.41 8.14 -2.38 -0.02 3.39 16 40 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -57.17 330.36 5.49 -51.68 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 1.04 Total: 28.62 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 6.09 Total: 8.01 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -2.12 Total: -111.03 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -1.54 Total: -13.10 kcal Atomic # 14 Polarization: 33.80 SS G_CDS: 2.03 Total: 35.82 kcal Total: -57.17 5.49 -51.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119647797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.496 kcal (2) G-P(sol) polarization free energy of solvation -57.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds