Wall clock time and date at job start Tue Mar 31 2020 05:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00266 * 2 1 4 4 C 1.53002 * 109.47180 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46612 * 180.02562 * 4 3 2 6 6 N 1.40587 * 127.38156 * 275.22611 * 5 4 3 7 7 N 1.28915 * 106.81794 * 179.97438 * 6 5 4 8 8 N 1.28427 * 110.30958 * 359.72614 * 7 6 5 9 9 C 1.31466 * 110.51420 * 0.46125 * 8 7 6 10 10 N 1.38383 * 126.44114 * 179.81554 * 9 8 7 11 11 C 1.46839 * 110.99849 * 294.91334 * 10 9 8 12 12 C 1.53041 * 109.51284 * 185.83423 * 11 10 9 13 13 C 1.53123 * 109.27824 * 300.82798 * 12 11 10 14 14 C 1.53110 * 109.15903 * 57.65449 * 13 12 11 15 15 H 1.08995 * 109.50532 * 62.32883 * 14 13 12 16 16 C 1.50704 * 109.50461 * 182.40611 * 14 13 12 17 17 H 1.07998 * 120.00422 * 119.99235 * 16 14 13 18 18 C 1.37881 * 119.99863 * 300.00100 * 16 14 13 19 19 N 1.31518 * 119.99972 * 179.97438 * 18 16 14 20 20 Si 1.86806 * 119.99739 * 0.02562 * 18 16 14 21 21 H 1.48491 * 109.47195 * 90.00084 * 20 18 16 22 22 H 1.48506 * 109.46692 * 209.99799 * 20 18 16 23 23 H 1.48495 * 109.47084 * 329.99596 * 20 18 16 24 24 C 1.46822 * 110.98384 * 59.13248 * 10 9 8 25 25 H 1.08993 * 109.47336 * 300.00438 * 1 2 3 26 26 H 1.09008 * 109.47171 * 60.00274 * 1 2 3 27 27 H 1.09000 * 109.47159 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46934 * 59.99391 * 3 2 1 29 29 H 1.09006 * 109.46546 * 299.99782 * 3 2 1 30 30 H 1.08992 * 109.47051 * 60.00153 * 4 3 2 31 31 H 1.09000 * 109.46816 * 299.99942 * 4 3 2 32 32 H 1.08997 * 109.46353 * 65.82885 * 11 10 9 33 33 H 1.08999 * 109.46513 * 305.84280 * 11 10 9 34 34 H 1.09001 * 109.50243 * 60.76968 * 12 11 10 35 35 H 1.08997 * 109.50204 * 180.88958 * 12 11 10 36 36 H 1.09001 * 109.52108 * 177.56332 * 13 12 11 37 37 H 1.09001 * 109.52291 * 297.68616 * 13 12 11 38 38 H 0.97001 * 119.99593 * 180.02562 * 19 18 16 39 39 H 1.09004 * 109.47232 * 54.13711 * 24 10 9 40 40 H 1.09005 * 109.45756 * 294.16222 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5229 0.0013 6 7 4.3860 3.3444 -1.1109 7 7 4.9138 4.4304 -0.6594 8 7 5.0122 4.3797 0.6201 9 6 4.5539 3.2336 1.0724 10 7 4.5070 2.8318 2.3958 11 6 5.8590 2.6839 2.9491 12 6 5.7724 2.1012 4.3616 13 6 4.9389 3.0352 5.2435 14 6 3.5519 3.2107 4.6192 15 1 3.0439 2.2470 4.5844 16 6 2.7448 4.1753 5.4495 17 1 2.3735 5.0883 5.0081 18 6 2.4806 3.8922 6.7728 19 7 1.7766 4.7342 7.4975 20 14 3.1236 2.3133 7.5365 21 1 4.4696 2.5557 8.1151 22 1 2.1969 1.8688 8.6084 23 1 3.2154 1.2605 6.4934 24 6 3.7029 3.7611 3.1992 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 3.8575 0.6436 -0.8891 31 1 3.8567 0.6438 0.8909 32 1 6.3444 3.6590 2.9877 33 1 6.4397 2.0140 2.3150 34 1 5.2996 1.1199 4.3222 35 1 6.7752 2.0062 4.7782 36 1 4.8383 2.6027 6.2389 37 1 5.4322 4.0045 5.3157 38 1 1.5911 4.5351 8.4286 39 1 2.7176 3.8739 2.7467 40 1 4.1985 4.7313 3.2366 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119648284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:44 Heat of formation + Delta-G solvation = 85.560570 kcal Electronic energy + Delta-G solvation = -22880.454522 eV Core-core repulsion = 19540.675816 eV Total energy + Delta-G solvation = -3339.778706 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.95511 -38.88678 -38.29671 -35.41591 -34.27024 -32.43506 -30.82838 -30.58799 -30.06655 -26.74083 -25.21171 -24.78319 -24.23599 -22.54745 -21.78051 -21.22545 -19.08817 -17.79390 -17.21063 -16.59956 -16.45167 -16.34331 -15.93206 -15.15428 -14.77274 -14.54663 -14.28530 -13.96677 -13.49431 -13.13791 -13.11291 -12.74677 -12.61959 -12.43769 -12.36379 -11.72861 -11.62506 -11.40839 -11.22139 -11.02009 -10.78231 -10.52194 -10.40465 -10.18950 -10.02031 -9.99524 -9.90668 -9.35557 -9.12733 -8.74975 -8.62955 -6.16732 -4.17989 0.94094 1.60079 2.30663 3.20191 3.31081 3.33458 3.35074 3.74012 4.23395 4.32005 4.58518 4.62678 4.93157 4.99548 5.06329 5.10316 5.15438 5.17962 5.24732 5.34824 5.40795 5.45234 5.54060 5.60057 5.67734 5.85221 5.92957 6.00270 6.10073 6.24448 6.33576 6.53439 6.56520 6.74692 6.85630 6.98692 7.12878 7.39629 7.64038 8.38707 8.51622 8.85579 9.43907 10.96117 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.014983 B = 0.005803 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.321804 B = 4823.532545 C = 5761.591716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.049 3.951 4 C 0.133 3.867 5 N -0.368 5.368 6 N -0.090 5.090 7 N -0.037 5.037 8 N -0.349 5.349 9 C 0.432 3.568 10 N -0.475 5.475 11 C 0.071 3.929 12 C -0.118 4.118 13 C -0.127 4.127 14 C 0.024 3.976 15 H 0.039 0.961 16 C -0.519 4.519 17 H 0.075 0.925 18 C 0.074 3.926 19 N -0.897 5.897 20 Si 0.887 3.113 21 H -0.278 1.278 22 H -0.297 1.297 23 H -0.263 1.263 24 C 0.086 3.914 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.265 0.735 39 H 0.070 0.930 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.008 -10.356 -12.386 16.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C -0.029 4.029 4 C 0.010 3.990 5 N -0.167 5.167 6 N -0.076 5.076 7 N -0.033 5.033 8 N -0.205 5.205 9 C 0.066 3.934 10 N -0.203 5.203 11 C -0.056 4.056 12 C -0.156 4.156 13 C -0.165 4.165 14 C 0.005 3.995 15 H 0.057 0.943 16 C -0.557 4.557 17 H 0.093 0.907 18 C -0.129 4.129 19 N -0.534 5.534 20 Si 0.717 3.283 21 H -0.205 1.205 22 H -0.225 1.225 23 H -0.188 1.188 24 C -0.040 4.040 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.109 0.891 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.140 0.860 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.095 -10.040 -13.214 16.882 hybrid contribution 0.049 -0.626 1.055 1.228 sum 3.144 -10.666 -12.159 16.477 Atomic orbital electron populations 1.22804 0.79799 1.03142 1.00584 1.87767 1.20674 1.26354 1.95611 1.22702 0.92204 0.85931 1.02062 1.21617 0.92581 0.77892 1.06903 1.51463 1.43857 1.16208 1.05216 1.82557 1.19405 0.98822 1.06813 1.77943 1.09063 1.13028 1.03274 1.75025 1.24087 1.17900 1.03499 1.23402 0.92613 0.86722 0.90676 1.59319 1.16769 1.49732 0.94520 1.22161 0.85718 1.01082 0.96607 1.21694 1.00485 1.00250 0.93190 1.22101 0.97894 0.98540 0.97944 1.19190 0.92819 0.97927 0.89572 0.94329 1.20880 1.33056 1.06555 0.95197 0.90711 1.24963 0.94482 0.96415 0.96997 1.69890 1.39006 1.36178 1.08363 0.86852 0.77967 0.84557 0.78956 1.20493 1.22479 1.18794 1.22349 0.95091 0.92471 0.94049 0.93301 0.93892 0.89126 0.91649 0.92308 0.87240 0.86021 0.92514 0.91332 0.91352 0.91498 0.92936 0.91777 0.92493 0.91159 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.27 10.70 -35.23 -0.38 -4.64 16 3 C 0.05 0.54 6.26 37.16 0.23 0.78 16 4 C 0.13 1.44 6.88 -4.04 -0.03 1.41 16 5 N -0.37 -5.19 3.69 -61.86 -0.23 -5.42 16 6 N -0.09 -1.40 13.93 60.35 0.84 -0.56 16 7 N -0.04 -0.64 13.38 60.35 0.81 0.17 16 8 N -0.35 -6.21 12.14 30.10 0.37 -5.85 16 9 C 0.43 6.93 6.49 -320.41 -2.08 4.85 16 10 N -0.48 -7.62 4.62 -174.92 -0.81 -8.42 16 11 C 0.07 1.04 5.39 -3.84 -0.02 1.02 16 12 C -0.12 -1.79 6.09 -26.65 -0.16 -1.95 16 13 C -0.13 -2.47 4.73 -26.61 -0.13 -2.59 16 14 C 0.02 0.52 1.85 -91.69 -0.17 0.35 16 15 H 0.04 0.85 7.21 -51.93 -0.37 0.48 16 16 C -0.52 -13.65 9.15 -34.44 -0.31 -13.97 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 19 N -0.90 -26.41 13.96 55.43 0.77 -25.64 16 20 Si 0.89 20.69 24.35 -169.99 -4.14 16.55 16 21 H -0.28 -6.32 6.89 56.52 0.39 -5.93 16 22 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.26 -5.79 6.53 56.52 0.37 -5.42 16 24 C 0.09 1.62 4.57 -3.85 -0.02 1.60 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.04 0.32 8.14 -51.92 -0.42 -0.10 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.12 1.26 8.10 -51.93 -0.42 0.84 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 1.09 3.34 -51.93 -0.17 0.91 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.07 1.36 8.10 -51.93 -0.42 0.93 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 325.89 15.07 4.91 4.91 Total: -1.00 -29.90 325.89 -5.58 -35.49 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.06 Total: -1.40 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -1.67 Total: -5.18 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 1.75 Total: -45.72 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.38 Total: -4.64 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.14 Total: 16.55 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.90 -5.58 -35.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119648284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.048 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds