Wall clock time and date at job start Tue Mar 31 2020 05:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 114.00135 * 2 1 4 4 C 1.52999 * 109.46751 * 180.02562 * 3 2 1 5 5 N 1.46509 * 109.46839 * 175.49925 * 4 3 2 6 6 N 1.40583 * 127.38045 * 84.17414 * 5 4 3 7 7 N 1.28906 * 106.81617 * 179.97438 * 6 5 4 8 8 N 1.28425 * 110.31545 * 0.02562 * 7 6 5 9 9 C 1.31477 * 110.50600 * 359.73950 * 8 7 6 10 10 N 1.38377 * 126.43549 * 180.25971 * 9 8 7 11 11 C 1.46844 * 111.00021 * 35.46658 * 10 9 8 12 12 C 1.53034 * 109.52448 * 174.15748 * 11 10 9 13 13 C 1.53117 * 109.28050 * 59.17716 * 12 11 10 14 14 C 1.53124 * 109.16254 * 302.34889 * 13 12 11 15 15 H 1.09002 * 109.49746 * 297.70990 * 14 13 12 16 16 C 1.50696 * 109.50597 * 177.63305 * 14 13 12 17 17 H 1.07997 * 119.99893 * 239.99976 * 16 14 13 18 18 C 1.37881 * 120.00182 * 59.99910 * 16 14 13 19 19 N 1.31518 * 119.99456 * 0.02562 * 18 16 14 20 20 Si 1.86793 * 120.00150 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47308 * 59.99784 * 20 18 16 22 22 H 1.48492 * 109.47335 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47295 * 300.00078 * 20 18 16 24 24 C 1.46848 * 111.00157 * 271.25109 * 10 9 8 25 25 H 1.09004 * 109.47742 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47100 * 60.00336 * 1 2 3 27 27 H 1.09008 * 109.47285 * 300.00219 * 1 2 3 28 28 H 1.09000 * 109.46768 * 299.99732 * 3 2 1 29 29 H 1.08995 * 109.46770 * 59.99647 * 3 2 1 30 30 H 1.08999 * 109.47429 * 295.49309 * 4 3 2 31 31 H 1.08996 * 109.47532 * 55.49734 * 4 3 2 32 32 H 1.09005 * 109.46295 * 294.17236 * 11 10 9 33 33 H 1.09003 * 109.46647 * 54.14937 * 11 10 9 34 34 H 1.09000 * 109.50681 * 179.11844 * 12 11 10 35 35 H 1.09001 * 109.50551 * 299.23459 * 12 11 10 36 36 H 1.09000 * 109.52541 * 62.25114 * 13 12 11 37 37 H 1.09002 * 109.52645 * 182.44108 * 13 12 11 38 38 H 0.97001 * 119.99055 * 180.02562 * 19 18 16 39 39 H 1.08991 * 109.46365 * 305.85921 * 24 10 9 40 40 H 1.08998 * 109.45883 * 65.82907 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 4.1310 2.5187 -0.1090 6 7 4.3817 3.4287 0.9328 7 7 4.9118 4.4737 0.3957 8 7 5.0200 4.3161 -0.8742 9 6 4.5623 3.1369 -1.2326 10 7 4.5259 2.6253 -2.5179 11 6 5.6975 3.0583 -3.2900 12 6 5.6993 2.3598 -4.6516 13 6 4.4118 2.7116 -5.4020 14 6 3.2064 2.2943 -4.5550 15 1 3.2208 1.2142 -4.4089 16 6 1.9347 2.6896 -5.2604 17 1 1.2434 3.3703 -4.7860 18 6 1.6539 2.1823 -6.5113 19 7 2.4956 1.3530 -7.0887 20 14 0.0772 2.6718 -7.3853 21 1 0.0568 4.1436 -7.5821 22 1 0.0127 1.9954 -8.7056 23 1 -1.0910 2.2662 -6.5631 24 6 3.2769 2.9946 -3.1961 25 1 -0.3635 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 1.6885 1.8464 0.8899 30 1 3.8631 0.7147 0.9267 31 1 3.8513 0.5757 -0.8477 32 1 5.6578 4.1378 -3.4356 33 1 6.6065 2.7983 -2.7474 34 1 6.5606 2.6932 -5.2306 35 1 5.7530 1.2808 -4.5071 36 1 4.3766 3.7862 -5.5811 37 1 4.3888 2.1818 -6.3543 38 1 2.2981 0.9964 -7.9689 39 1 2.4277 2.6885 -2.5853 40 1 3.2486 4.0744 -3.3422 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119648285.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:46 Heat of formation + Delta-G solvation = 76.402259 kcal Electronic energy + Delta-G solvation = -22969.671258 eV Core-core repulsion = 19629.495417 eV Total energy + Delta-G solvation = -3340.175840 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.83989 -38.67209 -38.16706 -35.27869 -34.15407 -32.24022 -30.67825 -30.25196 -29.79289 -26.61541 -25.20542 -24.43930 -24.02514 -22.59181 -21.55026 -21.16221 -18.87896 -17.72639 -17.00600 -16.47525 -16.26473 -15.95184 -15.82526 -15.05146 -14.67721 -14.34757 -14.19903 -13.74153 -13.30684 -12.97531 -12.77801 -12.65758 -12.51672 -12.24667 -12.03313 -11.58196 -11.48536 -11.07005 -10.98128 -10.92975 -10.85854 -10.43578 -10.33067 -10.25110 -9.98018 -9.88133 -9.63742 -9.38848 -8.97353 -8.58430 -8.40702 -6.12911 -4.20365 1.08292 1.72301 2.41960 3.23349 3.29120 3.30756 3.46860 3.87877 4.32475 4.36254 4.68395 4.71962 5.03026 5.09746 5.17343 5.20389 5.26685 5.31476 5.47157 5.54054 5.57436 5.59139 5.71668 5.77998 5.94039 6.01355 6.12947 6.22491 6.41219 6.49089 6.64369 6.79419 6.86928 7.09076 7.17004 7.35477 7.59141 7.83116 7.96188 8.25164 8.63078 8.81675 9.45067 10.93080 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.013738 B = 0.006183 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.698505 B = 4527.481755 C = 5874.462336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.048 3.952 4 C 0.132 3.868 5 N -0.374 5.374 6 N -0.094 5.094 7 N -0.037 5.037 8 N -0.359 5.359 9 C 0.435 3.565 10 N -0.465 5.465 11 C 0.072 3.928 12 C -0.118 4.118 13 C -0.115 4.115 14 C 0.060 3.940 15 H 0.040 0.960 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.068 3.932 19 N -0.885 5.885 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.074 3.926 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.037 0.963 37 H 0.097 0.903 38 H 0.263 0.737 39 H 0.062 0.938 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 -2.374 10.249 10.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C -0.030 4.030 4 C 0.009 3.991 5 N -0.173 5.173 6 N -0.081 5.081 7 N -0.033 5.033 8 N -0.217 5.217 9 C 0.069 3.931 10 N -0.192 5.192 11 C -0.054 4.054 12 C -0.156 4.156 13 C -0.153 4.153 14 C 0.041 3.959 15 H 0.058 0.942 16 C -0.560 4.560 17 H 0.072 0.928 18 C -0.134 4.134 19 N -0.523 5.523 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.051 4.051 25 H 0.109 0.891 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.142 0.858 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.352 -2.195 11.036 11.333 hybrid contribution -1.420 0.393 -0.955 1.756 sum -0.068 -1.802 10.081 10.241 Atomic orbital electron populations 1.22804 0.79866 1.03180 1.00470 1.87782 1.20622 1.26178 1.95565 1.22737 0.92348 0.86072 1.01826 1.21641 0.92416 0.78103 1.06964 1.51329 1.44911 1.15937 1.05146 1.82512 1.19777 0.96473 1.09372 1.77870 1.08799 1.15352 1.01327 1.74993 1.26527 1.14250 1.05893 1.23541 0.92272 0.86860 0.90384 1.59199 1.07699 1.56251 0.96059 1.22174 0.89235 0.99338 0.94669 1.21744 1.00160 1.00425 0.93250 1.21735 0.91979 0.99809 1.01826 1.18709 0.94267 0.96220 0.86752 0.94231 1.20974 1.04518 1.28371 1.02104 0.92769 1.24890 0.96688 0.94696 0.97176 1.69860 1.35641 1.30989 1.15783 0.86654 0.83664 0.78797 0.78882 1.20227 1.21152 1.20289 1.22665 0.85204 0.99449 0.97772 0.89110 0.93222 0.94057 0.91909 0.92355 0.87227 0.85804 0.92630 0.91481 0.92139 0.91683 0.94412 0.88440 0.92731 0.91977 0.93780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.38 -4.84 10.70 -35.23 -0.38 -5.21 16 3 C 0.05 0.60 6.26 37.16 0.23 0.83 16 4 C 0.13 1.62 6.89 -4.04 -0.03 1.59 16 5 N -0.37 -5.72 3.69 -61.86 -0.23 -5.95 16 6 N -0.09 -1.56 13.93 60.35 0.84 -0.72 16 7 N -0.04 -0.67 13.38 60.35 0.81 0.14 16 8 N -0.36 -6.61 11.64 30.09 0.35 -6.26 16 9 C 0.44 7.45 6.79 -320.43 -2.17 5.28 16 10 N -0.47 -8.07 4.61 -174.90 -0.81 -8.88 16 11 C 0.07 1.20 5.08 -3.84 -0.02 1.18 16 12 C -0.12 -2.03 6.09 -26.65 -0.16 -2.20 16 13 C -0.12 -2.46 5.02 -26.61 -0.13 -2.60 16 14 C 0.06 1.34 2.26 -91.69 -0.21 1.13 16 15 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 16 C -0.52 -13.18 8.57 -34.44 -0.30 -13.48 16 17 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 18 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.88 -23.51 11.35 55.43 0.63 -22.89 16 20 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 C 0.07 1.44 4.62 -3.83 -0.02 1.42 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.06 0.87 6.76 -51.93 -0.35 0.52 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.12 1.55 8.08 -51.93 -0.42 1.13 16 32 H 0.06 0.95 8.05 -51.93 -0.42 0.54 16 33 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 2.35 6.15 -51.93 -0.32 2.03 16 38 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 39 H 0.06 1.18 6.72 -51.93 -0.35 0.83 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 329.38 15.07 4.96 4.96 Total: -1.00 -27.48 329.38 -6.67 -34.16 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.05 Total: -0.73 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.79 Total: -3.72 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 1.59 Total: -44.55 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.38 Total: -5.21 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.48 -6.67 -34.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119648285.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.558 kcal (2) G-P(sol) polarization free energy of solvation -27.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds