Wall clock time and date at job start Tue Mar 31 2020 05:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 114.00135 * 2 1 4 4 C 1.52999 * 109.46751 * 180.02562 * 3 2 1 5 5 N 1.46509 * 109.46839 * 175.49925 * 4 3 2 6 6 N 1.40583 * 127.38045 * 84.17414 * 5 4 3 7 7 N 1.28906 * 106.81617 * 179.97438 * 6 5 4 8 8 N 1.28425 * 110.31545 * 0.02562 * 7 6 5 9 9 C 1.31477 * 110.50600 * 359.73950 * 8 7 6 10 10 N 1.38377 * 126.43549 * 180.25971 * 9 8 7 11 11 C 1.46844 * 111.00021 * 35.46658 * 10 9 8 12 12 C 1.53034 * 109.52448 * 174.15748 * 11 10 9 13 13 C 1.53117 * 109.28050 * 59.17716 * 12 11 10 14 14 C 1.53124 * 109.16254 * 302.34889 * 13 12 11 15 15 H 1.09002 * 109.49746 * 297.70990 * 14 13 12 16 16 C 1.50696 * 109.50597 * 177.63305 * 14 13 12 17 17 H 1.07997 * 119.99893 * 239.99976 * 16 14 13 18 18 C 1.37881 * 120.00182 * 59.99910 * 16 14 13 19 19 N 1.31518 * 119.99456 * 0.02562 * 18 16 14 20 20 Si 1.86793 * 120.00150 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47308 * 59.99784 * 20 18 16 22 22 H 1.48492 * 109.47335 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47295 * 300.00078 * 20 18 16 24 24 C 1.46848 * 111.00157 * 271.25109 * 10 9 8 25 25 H 1.09004 * 109.47742 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47100 * 60.00336 * 1 2 3 27 27 H 1.09008 * 109.47285 * 300.00219 * 1 2 3 28 28 H 1.09000 * 109.46768 * 299.99732 * 3 2 1 29 29 H 1.08995 * 109.46770 * 59.99647 * 3 2 1 30 30 H 1.08999 * 109.47429 * 295.49309 * 4 3 2 31 31 H 1.08996 * 109.47532 * 55.49734 * 4 3 2 32 32 H 1.09005 * 109.46295 * 294.17236 * 11 10 9 33 33 H 1.09003 * 109.46647 * 54.14937 * 11 10 9 34 34 H 1.09000 * 109.50681 * 179.11844 * 12 11 10 35 35 H 1.09001 * 109.50551 * 299.23459 * 12 11 10 36 36 H 1.09000 * 109.52541 * 62.25114 * 13 12 11 37 37 H 1.09002 * 109.52645 * 182.44108 * 13 12 11 38 38 H 0.97001 * 119.99055 * 180.02562 * 19 18 16 39 39 H 1.08991 * 109.46365 * 305.85921 * 24 10 9 40 40 H 1.08998 * 109.45883 * 65.82907 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 4.1310 2.5187 -0.1090 6 7 4.3817 3.4287 0.9328 7 7 4.9118 4.4737 0.3957 8 7 5.0200 4.3161 -0.8742 9 6 4.5623 3.1369 -1.2326 10 7 4.5259 2.6253 -2.5179 11 6 5.6975 3.0583 -3.2900 12 6 5.6993 2.3598 -4.6516 13 6 4.4118 2.7116 -5.4020 14 6 3.2064 2.2943 -4.5550 15 1 3.2208 1.2142 -4.4089 16 6 1.9347 2.6896 -5.2604 17 1 1.2434 3.3703 -4.7860 18 6 1.6539 2.1823 -6.5113 19 7 2.4956 1.3530 -7.0887 20 14 0.0772 2.6718 -7.3853 21 1 0.0568 4.1436 -7.5821 22 1 0.0127 1.9954 -8.7056 23 1 -1.0910 2.2662 -6.5631 24 6 3.2769 2.9946 -3.1961 25 1 -0.3635 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 1.6885 1.8464 0.8899 30 1 3.8631 0.7147 0.9267 31 1 3.8513 0.5757 -0.8477 32 1 5.6578 4.1378 -3.4356 33 1 6.6065 2.7983 -2.7474 34 1 6.5606 2.6932 -5.2306 35 1 5.7530 1.2808 -4.5071 36 1 4.3766 3.7862 -5.5811 37 1 4.3888 2.1818 -6.3543 38 1 2.2981 0.9964 -7.9689 39 1 2.4277 2.6885 -2.5853 40 1 3.2486 4.0744 -3.3422 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119648285.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:46 Heat of formation + Delta-G solvation = 60.014173 kcal Electronic energy + Delta-G solvation = -22970.381899 eV Core-core repulsion = 19629.495417 eV Total energy + Delta-G solvation = -3340.886481 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.18105 -40.16945 -39.13342 -36.53103 -35.80690 -33.90649 -32.04504 -31.81322 -31.07600 -27.52463 -27.04158 -25.78950 -25.32241 -23.93940 -23.02282 -22.55932 -20.49076 -19.08663 -18.42703 -17.81958 -17.56478 -17.22139 -16.94336 -16.54567 -16.05529 -15.73812 -15.48436 -15.25665 -14.61821 -14.54217 -14.38080 -14.04904 -13.63185 -13.54383 -13.50658 -12.85962 -12.75395 -12.66810 -12.57247 -12.38742 -12.25866 -11.98210 -11.86335 -11.65234 -11.56973 -11.29220 -11.08592 -10.83096 -10.74573 -10.39725 -9.98685 -8.09700 -6.22995 -0.24268 0.49554 1.03722 1.43255 1.44896 1.51356 2.23359 2.45934 2.79424 3.16086 3.19150 3.47969 3.70808 3.88092 3.95160 4.05341 4.14571 4.15980 4.27010 4.39717 4.43840 4.47967 4.53573 4.56991 4.65247 4.72500 4.81030 4.83027 4.85540 4.98120 5.08921 5.22776 5.44422 5.60943 5.63167 5.84623 5.96619 5.98871 6.11864 6.35077 6.85850 7.28053 7.44970 8.94767 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.013738 B = 0.006183 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.698505 B = 4527.481755 C = 5874.462336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.054 3.946 4 C 0.127 3.873 5 N -0.361 5.361 6 N -0.086 5.086 7 N -0.052 5.052 8 N -0.373 5.373 9 C 0.429 3.571 10 N -0.460 5.460 11 C 0.075 3.925 12 C -0.106 4.106 13 C -0.110 4.110 14 C 0.061 3.939 15 H 0.014 0.986 16 C -0.539 4.539 17 H 0.050 0.950 18 C 0.025 3.975 19 N -0.908 5.908 20 Si 0.947 3.053 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.091 3.909 25 H 0.108 0.892 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.138 0.862 31 H 0.124 0.876 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.028 0.972 37 H 0.068 0.932 38 H 0.262 0.738 39 H 0.063 0.937 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 -2.612 11.339 11.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C -0.024 4.024 4 C 0.006 3.994 5 N -0.161 5.161 6 N -0.073 5.073 7 N -0.048 5.048 8 N -0.230 5.230 9 C 0.062 3.938 10 N -0.187 5.187 11 C -0.051 4.051 12 C -0.144 4.144 13 C -0.148 4.148 14 C 0.042 3.958 15 H 0.033 0.967 16 C -0.577 4.577 17 H 0.068 0.932 18 C -0.175 4.175 19 N -0.546 5.546 20 Si 0.773 3.227 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.035 4.035 25 H 0.126 0.874 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.156 0.844 31 H 0.142 0.858 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.373 -2.440 12.143 12.461 hybrid contribution -1.468 0.420 -1.246 1.970 sum -0.095 -2.020 10.897 11.083 Atomic orbital electron populations 1.22997 0.78614 1.04507 1.00830 1.87760 1.22024 1.26081 1.95613 1.22632 0.92276 0.86125 1.01355 1.21918 0.92399 0.76640 1.08441 1.51476 1.43903 1.16411 1.04313 1.82459 1.19024 0.96272 1.09535 1.77872 1.09726 1.15966 1.01234 1.74933 1.26959 1.14920 1.06231 1.23382 0.93047 0.86951 0.90398 1.59115 1.07052 1.56256 0.96261 1.22194 0.89696 0.98933 0.94299 1.21623 0.98747 1.00533 0.93513 1.21555 0.93781 0.98638 1.00847 1.18574 0.93950 0.94828 0.88444 0.96741 1.21333 1.05641 1.28196 1.02556 0.93169 1.25552 0.99274 0.94807 0.97898 1.69980 1.36926 1.31792 1.15946 0.85788 0.80626 0.78412 0.77889 1.20031 1.20915 1.19757 1.22289 0.86555 0.98169 0.96505 0.87397 0.94193 0.92358 0.93908 0.91271 0.84443 0.85815 0.93060 0.89242 0.89647 0.91713 0.95315 0.91317 0.92848 0.91810 0.94856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.40 -9.40 10.70 -148.98 -1.59 -11.00 16 3 C 0.05 1.27 6.26 71.98 0.45 1.72 16 4 C 0.13 2.89 6.89 86.38 0.59 3.48 16 5 N -0.36 -10.41 3.69 -349.62 -1.29 -11.70 16 6 N -0.09 -2.67 13.93 37.02 0.52 -2.15 16 7 N -0.05 -1.80 13.38 37.02 0.50 -1.30 16 8 N -0.37 -13.21 11.64 -58.70 -0.68 -13.90 16 9 C 0.43 14.07 6.79 260.65 1.77 15.84 16 10 N -0.46 -15.50 4.61 -707.26 -3.26 -18.76 16 11 C 0.08 2.37 5.08 86.33 0.44 2.81 16 12 C -0.11 -3.55 6.09 30.64 0.19 -3.36 16 13 C -0.11 -4.73 5.02 30.67 0.15 -4.58 16 14 C 0.06 2.79 2.26 -11.49 -0.03 2.77 16 15 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 16 C -0.54 -27.65 8.57 25.60 0.22 -27.44 16 17 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 18 C 0.02 1.29 5.30 84.65 0.45 1.73 16 19 N -0.91 -49.00 11.35 21.45 0.24 -48.75 16 20 Si 0.95 41.35 29.54 68.60 2.03 43.38 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 24 C 0.09 3.53 4.62 86.33 0.40 3.92 16 25 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.04 1.17 6.76 -2.39 -0.02 1.15 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.12 2.88 8.08 -2.39 -0.02 2.86 16 32 H 0.05 1.68 8.05 -2.38 -0.02 1.67 16 33 H 0.09 2.47 8.10 -2.39 -0.02 2.46 16 34 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 3.37 6.15 -2.39 -0.01 3.36 16 38 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 39 H 0.06 2.44 6.72 -2.39 -0.02 2.42 16 40 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -58.26 329.38 3.37 -54.89 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.03 Total: 10.65 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 5.88 Total: -1.36 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -3.98 Total: -96.56 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -1.59 Total: -11.00 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -58.26 3.37 -54.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119648285.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.903 kcal (2) G-P(sol) polarization free energy of solvation -58.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds